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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:532661..535397 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G01730.1 vs.
Match: EWM24608.1 (Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana]) HSP 1 Score: 793.9 bits (2049), Expect = 2.600e-226 Identity = 421/437 (96.34%), Postives = 429/437 (98.17%), Query Frame = 0
Query: 1 MLRQILRRAPTRALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
MLRQ+LRRAP+RAL +QMRGMAGGKDVRFGV+GRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTND+AGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVV VLN ISRAVTSKAEVSQVGTISANGEK IGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQ AELENPYILLVEKKI SIQSLIPLLEMVVK+QRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVEN TEDMLGTSKKVTVSKDDTLILHGNGAR+AIDERC+LLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGG SEVEVNEKKDRVVDALNATRAAVEQGIVPGGG
Sbjct: 1 MLRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 437
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G01730.1 ID=NO14G01730.1|Name=NO14G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2422bp TTGTGTGTGGCACGGTTGCATGATGCAGGATACTTCGCTCCGCACAGAAT GCCTTTGTTCCTGTTCGTACATGCCTGGCCCTCCCTTGGCATCTATTGCT CGAGAGGAGCCCCATACTGACGCCAAACACTGCCGATAGACTTATTCTGT CGCCCTGCTTTCTCCCCTCCAGTCCTTCCTACCACAGAACAACTTCATCA TCATGCTCCGACAAATCTTGCGCAGGGCCCCAACCCGGGCGCTCACGGTG CAAATGCGTGGCATGGCAGGCGGCAAGGACGTCCGCTTCGGCGTGGAAGG CCGCGCACAGATGCTCATGGGCGTCGACAAGCTAGCCGACGCCGTGCAAG TCACTTTGGGTCCAAAGGGTCGCAACGCCATTATTGACCAGCCTTTTGGA GCCCCCAAGATTACGAAGGACGGAGTCACCGTTGCAAAGAGCATTGAGTT CAAGGAGCGCTTCGTCAACATGGGTGCGGCGCTTGTACGGCAGGTGGCGA GCAAGACCAATGACATTGCTGGGGATGGAACGACGACAGCCACGGTCCTT ACCCGGGCGATTTTCTCCGAGGGCTGCAAAGCTGTGGCTGCTGGGCTGAA CCCAATGGACCTGCGAAGGGGGACGCAGTTGGCGGTGGATCACGTGGTGA AGGTGTTAAATGATATTTCGCGCGCTGTGACTAGTAAGGCGGAGGTGTCT CAGGTGGGGACAATCTCGGCCAACGGAGAGAAGGCCATTGGAGATTTGCT GGCGGATGCGATGGAGAGGGTGGGGAAGGAGGGCGTGATCACCGTGCAGG ACGGCAAGACCCTGCACAACGAGTTGGAGGTGGTGGAAGGGATGAAATTC GATCGTGGGTACATCTCTCCTTATTTCATCACAGACAACAAGACTCAGGC GGCCGAGCTTGAAAACCCTTACATCCTGTTAGTCGAGAAGAAAATCGCAT CCATCCAATCCCTCATCCCTCTATTGGAAATGGTGGTGAAGACCCAGCGT CCCCTTCTCATCATTGCGGAAGACGTCGAGTCCGAAGCCTTGGCGACGCT GGTCGTAAACAAACTGAGGGCAGGAATCAAAGTGGCTGCTGTGAAGGCTC CCGGTTTTGGGGATAACAGGAAGGCGACTTTGCAAGATATTGCCGTCTTG ACGGGCGGGCAGGTGATCAGTGAGGACTTGGGGTTGAAAGTCGAGAATGT GACGGAGGACATGTTGGGGACGTCCAAAAAGGTGACGGTCTCGAAAGATG ACACCTTAATTTTACATGGCAATGGCGCGCGGGAGGCGATCGACGAGCGG TGCGTGTTGCTTAAGGATTCCATCGCTGCCACTGCATCTGACTACGAGAA GGAGAAGCTGCAGGAACGCCTAGCCAAACTCTCGGGGGGGGTGGCGGTGA TCAAGGTTGGTGGTGGAAGCGAGGTTGAGGTGAACGAGAAGAAGGACAGA GTGGTGGATGCCTTGAACGCGACCAGGGCGGCTGTCGAGCAAGGAATTGT CCCGGGGGGGGGTTGGCACTGCTGTGGGCCAGCAAGCAGTTGGAGGAGGT CAAGAGTAAACTGACCAACATGGACCAGAGAATCGGCGTGGAGATCATCG AGAAGGCACTCAAGGCACCCGCGAGGTCGATCGCAAACAATGCTGGGGTG GAGGGGGCGGTTGTGGTGGGGGAGTTGCTGAAGAAGGAAAAGCCGGAGTT GGGGTACAACGCCCAGACTGACGAGTACGTCAATATGTTCGAGGCGGGGA TCATTGACCCGACCAAGGTGGTAAGGACTGCTTTGGTAGATGCCCAGTCG GTTGCTGCCTTGATGATTACGACCGAGGCAATGATTGCAGATTTGCCCAA GGAGGAGGGGGAGGGGGGGGGGATGCCGGGAATGGGTGGGATGGGTGGGA TGGGCGGGATGGGCGGGATGGGGTTCTAATGTGAGAGAAAGTGAGTACCG AGTATAGAAGTTGAGGAGTATCGAATGTTTGGTACATACACTATTTCATT GAAGGGGTGTAAGCCCTGTGTGTGAATGTGTGTGTCGGGGAATGGGGGGT TAGCGACTGACGGGCGGACTCATGGGGTGTATCTGGTACGGTGTGTGGCG GGAATGAAGAGAGAGTGTGTGAGAGCGAGAAAGAGAAAGAGAAAGAGTAG ACGTATCACGATTTTGTGTCCTCCAAGATGTGACTGCCGGTGCTTCTTTT CATATTTTCTCTCTCCTTAGAACTTGAAAATATGTCCTCATAGCGAGGCA GTGCATGATGGGAGGAGCAACAACCAAACATAAAAGGAAAATTAAGGCGA AAGACAATCTACGACCTAAAAGACAGGCCCCAAATTTTGCGAGAGGGTGG TGTCATGGGGCAGTTGCGGACAACGTGCGGACTGTCTTGTGCATCCAAAT ACAAACTCTCGTCACATCCTTT back to topprotein sequence of NO14G01730.1 >NO14G01730.1-protein ID=NO14G01730.1-protein|Name=NO14G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp MLRQILRRAPTRALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQV TLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVAS KTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVK VLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQD GKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIAS IQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAP GFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDD TLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVI KVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGGWHCCGPASSWRRS RVN* back to topmRNA from alignment at chr14:532661..535397- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G01730.1 ID=NO14G01730.1|Name=NO14G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2737bp|location=Sequence derived from alignment at chr14:532661..535397- (Nannochloropsis oceanica) TTGTGTGTGGCACGGTTGCATGATGCAGGATACTTCGCTCCGCACAGAAT
GCCTTTGTTCCTGTTCGTACATGCCTGGCCCTCCCTTGGCATCTATTGCT
CGAGAGGAGCCCCATACTGACGCCAAACACTGCCGATAGACTTATTCTGT
CGCCCTGCTTTCTCCCCTCCAGTCCTTCCTACCACAGAACAACTTCATCA
TCATGCTCCGACAAATCTTGCGCAGGGCCCCAACCCGGGCGCTCACGGTG
CAAATGCGTGGCATGGCAGGTAAACTATTGGGTGGCGAATAGGATTTGGT
GGGCTTGCTATAGACAGCGCATGGAGCAGAGTGTGGCGGAACCAGCCGGA
GATGCAGGAAGGTGCCGTGTGCGGCACGCGGCAGGCCAGGCAAGGGGCAG
AGTTCGCACACGCTCCTTATTTTGATGAGATGAAGCCTTATTTCCGAGTC
GTAAAACTAAGAAAGTAAAAGTAGTTTGTTTTTGTGTATTGTGTTCTTCT
GTATCTCAGATCATCCTACGCCTCCCCCATTGTCTCCTCACACAACATCC
CTCATCCCCTCCCTTTCCTCTCACACCTGAAAAGGCGGCAAGGACGTCCG
CTTCGGCGTGGAAGGCCGCGCACAGATGCTCATGGGCGTCGACAAGCTAG
CCGACGCCGTGCAAGTCACTTTGGGTCCAAAGGGTCGCAACGCCATTATT
GACCAGCCTTTTGGAGCCCCCAAGATTACGAAGGACGGAGTCACCGTTGC
AAAGAGCATTGAGTTCAAGGAGCGCTTCGTCAACATGGGTGCGGCGCTTG
TACGGCAGGTGGCGAGCAAGACCAATGACATTGCTGGGGATGGAACGACG
ACAGCCACGGTCCTTACCCGGGCGATTTTCTCCGAGGGCTGCAAAGCTGT
GGCTGCTGGGCTGAACCCAATGGACCTGCGAAGGGGGACGCAGTTGGCGG
TGGATCACGTGGTGAAGGTGTTAAATGATATTTCGCGCGCTGTGACTAGT
AAGGCGGAGGTGTCTCAGGTGGGGACAATCTCGGCCAACGGAGAGAAGGC
CATTGGAGATTTGCTGGCGGATGCGATGGAGAGGGTGGGGAAGGAGGGCG
TGATCACCGTGCAGGACGGCAAGACCCTGCACAACGAGTTGGAGGTGGTG
GAAGGGATGAAATTCGATCGTGGGTACATCTCTCCTTATTTCATCACAGA
CAACAAGACTCAGGCGGCCGAGCTTGAAAACCCTTACATCCTGTTAGTCG
AGAAGAAAATCGCATCCATCCAATCCCTCATCCCTCTATTGGAAATGGTG
GTGAAGACCCAGCGTCCCCTTCTCATCATTGCGGAAGACGTCGAGTCCGA
AGCCTTGGCGACGCTGGTCGTAAACAAACTGAGGGCAGGAATCAAAGTGG
CTGCTGTGAAGGCTCCCGGTTTTGGGGATAACAGGAAGGCGACTTTGCAA
GATATTGCCGTCTTGACGGGCGGGCAGGTGATCAGTGAGGACTTGGGGTT
GAAAGTCGAGAATGTGACGGAGGACATGTTGGGGACGTCCAAAAAGGTGA
CGGTCTCGAAAGATGACACCTTAATTTTACATGGCAATGGCGCGCGGGAG
GCGATCGACGAGCGGTGCGTGTTGCTTAAGGATTCCATCGCTGCCACTGC
ATCTGACTACGAGAAGGAGAAGCTGCAGGAACGCCTAGCCAAACTCTCGG
GGGGGGTGGCGGTGATCAAGGTTGGTGGTGGAAGCGAGGTTGAGGTGAAC
GAGAAGAAGGACAGAGTGGTGGATGCCTTGAACGCGACCAGGGCGGCTGT
CGAGCAAGGAATTGTCCCGGGGGGGGGTTGGCACTGCTGTGGGCCAGCAA
GCAGTTGGAGGAGGTCAAGAGTAAACTGACCAACATGGACCAGAGAATCG
GCGTGGAGATCATCGAGAAGGCACTCAAGGCACCCGCGAGGTCGATCGCA
AACAATGCTGGGGTGGAGGGGGCGGTTGTGGTGGGGGAGTTGCTGAAGAA
GGAAAAGCCGGAGTTGGGGTACAACGCCCAGACTGACGAGTACGTCAATA
TGTTCGAGGCGGGGATCATTGACCCGACCAAGGTGGTAAGGACTGCTTTG
GTAGATGCCCAGTCGGTTGCTGCCTTGATGATTACGACCGAGGCAATGAT
TGCAGATTTGCCCAAGGAGGAGGGGGAGGGGGGGGGGATGCCGGGAATGG
GTGGGATGGGTGGGATGGGCGGGATGGGCGGGATGGGGTTCTAATGTGAG
AGAAAGTGAGTACCGAGTATAGAAGTTGAGGAGTATCGAATGTTTGGTAC
ATACACTATTTCATTGAAGGGGTGTAAGCCCTGTGTGTGAATGTGTGTGT
CGGGGAATGGGGGGTTAGCGACTGACGGGCGGACTCATGGGGTGTATCTG
GTACGGTGTGTGGCGGGAATGAAGAGAGAGTGTGTGAGAGCGAGAAAGAG
AAAGAGAAAGAGTAGACGTATCACGATTTTGTGTCCTCCAAGATGTGACT
GCCGGTGCTTCTTTTCATATTTTCTCTCTCCTTAGAACTTGAAAATATGT
CCTCATAGCGAGGCAGTGCATGATGGGAGGAGCAACAACCAAACATAAAA
GGAAAATTAAGGCGAAAGACAATCTACGACCTAAAAGACAGGCCCCAAAT
TTTGCGAGAGGGTGGTGTCATGGGGCAGTTGCGGACAACGTGCGGACTGT
CTTGTGCATCCAAATACAAACTCTCGTCACATCCTTT back to topCoding sequence (CDS) from alignment at chr14:532661..535397- >NO14G01730.1 ID=NO14G01730.1|Name=NO14G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr14:532661..535397- (Nannochloropsis oceanica) ATGCTCCGACAAATCTTGCGCAGGGCCCCAACCCGGGCGCTCACGGTGCA AATGCGTGGCATGGCAGGCGGCAAGGACGTCCGCTTCGGCGTGGAAGGCC GCGCACAGATGCTCATGGGCGTCGACAAGCTAGCCGACGCCGTGCAAGTC ACTTTGGGTCCAAAGGGTCGCAACGCCATTATTGACCAGCCTTTTGGAGC CCCCAAGATTACGAAGGACGGAGTCACCGTTGCAAAGAGCATTGAGTTCA AGGAGCGCTTCGTCAACATGGGTGCGGCGCTTGTACGGCAGGTGGCGAGC AAGACCAATGACATTGCTGGGGATGGAACGACGACAGCCACGGTCCTTAC CCGGGCGATTTTCTCCGAGGGCTGCAAAGCTGTGGCTGCTGGGCTGAACC CAATGGACCTGCGAAGGGGGACGCAGTTGGCGGTGGATCACGTGGTGAAG GTGTTAAATGATATTTCGCGCGCTGTGACTAGTAAGGCGGAGGTGTCTCA GGTGGGGACAATCTCGGCCAACGGAGAGAAGGCCATTGGAGATTTGCTGG CGGATGCGATGGAGAGGGTGGGGAAGGAGGGCGTGATCACCGTGCAGGAC GGCAAGACCCTGCACAACGAGTTGGAGGTGGTGGAAGGGATGAAATTCGA TCGTGGGTACATCTCTCCTTATTTCATCACAGACAACAAGACTCAGGCGG CCGAGCTTGAAAACCCTTACATCCTGTTAGTCGAGAAGAAAATCGCATCC ATCCAATCCCTCATCCCTCTATTGGAAATGGTGGTGAAGACCCAGCGTCC CCTTCTCATCATTGCGGAAGACGTCGAGTCCGAAGCCTTGGCGACGCTGG TCGTAAACAAACTGAGGGCAGGAATCAAAGTGGCTGCTGTGAAGGCTCCC GGTTTTGGGGATAACAGGAAGGCGACTTTGCAAGATATTGCCGTCTTGAC GGGCGGGCAGGTGATCAGTGAGGACTTGGGGTTGAAAGTCGAGAATGTGA CGGAGGACATGTTGGGGACGTCCAAAAAGGTGACGGTCTCGAAAGATGAC ACCTTAATTTTACATGGCAATGGCGCGCGGGAGGCGATCGACGAGCGGTG CGTGTTGCTTAAGGATTCCATCGCTGCCACTGCATCTGACTACGAGAAGG AGAAGCTGCAGGAACGCCTAGCCAAACTCTCGGGGGGGGTGGCGGTGATC AAGGTTGGTGGTGGAAGCGAGGTTGAGGTGAACGAGAAGAAGGACAGAGT GGTGGATGCCTTGAACGCGACCAGGGCGGCTGTCGAGCAAGGAATTGTCC CGGGGGGGGGTTGGCACTGCTGTGGGCCAGCAAGCAGTTGGAGGAGGTCA AGAGTAAACTGA back to top
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