NO14G01730.1, NO14G01730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01730.1
Unique NameNO14G01730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2422
Alignment locationchr14:532661..535397 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:532661..535397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G01730.1 vs.
Match: EWM24608.1 (Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana])

HSP 1 Score: 793.9 bits (2049), Expect = 2.600e-226
Identity = 421/437 (96.34%), Postives = 429/437 (98.17%), Query Frame = 0
Query:    1 MLRQILRRAPTRALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVKVLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIASIQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDDTLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 438
            MLRQ+LRRAP+RAL +QMRGMAGGKDVRFGV+GRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTND+AGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVV VLN ISRAVTSKAEVSQVGTISANGEK IGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQ AELENPYILLVEKKI SIQSLIPLLEMVVK+QRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVEN TEDMLGTSKKVTVSKDDTLILHGNGAR+AIDERC+LLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGG SEVEVNEKKDRVVDALNATRAAVEQGIVPGGG
Sbjct:    1 MLRQVLRRAPSRALAMQMRGMAGGKDVRFGVDGRAQMLMGVDKLADAVQVTLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVASKTNDVAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVGVLNQISRAVTSKAEVSQVGTISANGEKVIGDLLADAMERVGKEGVITVQDGKTLHNELEVVEGMKFDRGYISPYFITDNKTQTAELENPYILLVEKKITSIQSLIPLLEMVVKSQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGG 437          
The following BLAST results are available for this feature:
BLAST of NO14G01730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24608.12.600e-22696.34Chaperonin Cpn60/TCP-1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01730NO14G01730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01730.1NO14G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01730.1.cds1NO14G01730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01730.1.cds2NO14G01730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01730.1 ID=NO14G01730.1|Name=NO14G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2422bp
TTGTGTGTGGCACGGTTGCATGATGCAGGATACTTCGCTCCGCACAGAAT
GCCTTTGTTCCTGTTCGTACATGCCTGGCCCTCCCTTGGCATCTATTGCT
CGAGAGGAGCCCCATACTGACGCCAAACACTGCCGATAGACTTATTCTGT
CGCCCTGCTTTCTCCCCTCCAGTCCTTCCTACCACAGAACAACTTCATCA
TCATGCTCCGACAAATCTTGCGCAGGGCCCCAACCCGGGCGCTCACGGTG
CAAATGCGTGGCATGGCAGGCGGCAAGGACGTCCGCTTCGGCGTGGAAGG
CCGCGCACAGATGCTCATGGGCGTCGACAAGCTAGCCGACGCCGTGCAAG
TCACTTTGGGTCCAAAGGGTCGCAACGCCATTATTGACCAGCCTTTTGGA
GCCCCCAAGATTACGAAGGACGGAGTCACCGTTGCAAAGAGCATTGAGTT
CAAGGAGCGCTTCGTCAACATGGGTGCGGCGCTTGTACGGCAGGTGGCGA
GCAAGACCAATGACATTGCTGGGGATGGAACGACGACAGCCACGGTCCTT
ACCCGGGCGATTTTCTCCGAGGGCTGCAAAGCTGTGGCTGCTGGGCTGAA
CCCAATGGACCTGCGAAGGGGGACGCAGTTGGCGGTGGATCACGTGGTGA
AGGTGTTAAATGATATTTCGCGCGCTGTGACTAGTAAGGCGGAGGTGTCT
CAGGTGGGGACAATCTCGGCCAACGGAGAGAAGGCCATTGGAGATTTGCT
GGCGGATGCGATGGAGAGGGTGGGGAAGGAGGGCGTGATCACCGTGCAGG
ACGGCAAGACCCTGCACAACGAGTTGGAGGTGGTGGAAGGGATGAAATTC
GATCGTGGGTACATCTCTCCTTATTTCATCACAGACAACAAGACTCAGGC
GGCCGAGCTTGAAAACCCTTACATCCTGTTAGTCGAGAAGAAAATCGCAT
CCATCCAATCCCTCATCCCTCTATTGGAAATGGTGGTGAAGACCCAGCGT
CCCCTTCTCATCATTGCGGAAGACGTCGAGTCCGAAGCCTTGGCGACGCT
GGTCGTAAACAAACTGAGGGCAGGAATCAAAGTGGCTGCTGTGAAGGCTC
CCGGTTTTGGGGATAACAGGAAGGCGACTTTGCAAGATATTGCCGTCTTG
ACGGGCGGGCAGGTGATCAGTGAGGACTTGGGGTTGAAAGTCGAGAATGT
GACGGAGGACATGTTGGGGACGTCCAAAAAGGTGACGGTCTCGAAAGATG
ACACCTTAATTTTACATGGCAATGGCGCGCGGGAGGCGATCGACGAGCGG
TGCGTGTTGCTTAAGGATTCCATCGCTGCCACTGCATCTGACTACGAGAA
GGAGAAGCTGCAGGAACGCCTAGCCAAACTCTCGGGGGGGGTGGCGGTGA
TCAAGGTTGGTGGTGGAAGCGAGGTTGAGGTGAACGAGAAGAAGGACAGA
GTGGTGGATGCCTTGAACGCGACCAGGGCGGCTGTCGAGCAAGGAATTGT
CCCGGGGGGGGGTTGGCACTGCTGTGGGCCAGCAAGCAGTTGGAGGAGGT
CAAGAGTAAACTGACCAACATGGACCAGAGAATCGGCGTGGAGATCATCG
AGAAGGCACTCAAGGCACCCGCGAGGTCGATCGCAAACAATGCTGGGGTG
GAGGGGGCGGTTGTGGTGGGGGAGTTGCTGAAGAAGGAAAAGCCGGAGTT
GGGGTACAACGCCCAGACTGACGAGTACGTCAATATGTTCGAGGCGGGGA
TCATTGACCCGACCAAGGTGGTAAGGACTGCTTTGGTAGATGCCCAGTCG
GTTGCTGCCTTGATGATTACGACCGAGGCAATGATTGCAGATTTGCCCAA
GGAGGAGGGGGAGGGGGGGGGGATGCCGGGAATGGGTGGGATGGGTGGGA
TGGGCGGGATGGGCGGGATGGGGTTCTAATGTGAGAGAAAGTGAGTACCG
AGTATAGAAGTTGAGGAGTATCGAATGTTTGGTACATACACTATTTCATT
GAAGGGGTGTAAGCCCTGTGTGTGAATGTGTGTGTCGGGGAATGGGGGGT
TAGCGACTGACGGGCGGACTCATGGGGTGTATCTGGTACGGTGTGTGGCG
GGAATGAAGAGAGAGTGTGTGAGAGCGAGAAAGAGAAAGAGAAAGAGTAG
ACGTATCACGATTTTGTGTCCTCCAAGATGTGACTGCCGGTGCTTCTTTT
CATATTTTCTCTCTCCTTAGAACTTGAAAATATGTCCTCATAGCGAGGCA
GTGCATGATGGGAGGAGCAACAACCAAACATAAAAGGAAAATTAAGGCGA
AAGACAATCTACGACCTAAAAGACAGGCCCCAAATTTTGCGAGAGGGTGG
TGTCATGGGGCAGTTGCGGACAACGTGCGGACTGTCTTGTGCATCCAAAT
ACAAACTCTCGTCACATCCTTT
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protein sequence of NO14G01730.1

>NO14G01730.1-protein ID=NO14G01730.1-protein|Name=NO14G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MLRQILRRAPTRALTVQMRGMAGGKDVRFGVEGRAQMLMGVDKLADAVQV
TLGPKGRNAIIDQPFGAPKITKDGVTVAKSIEFKERFVNMGAALVRQVAS
KTNDIAGDGTTTATVLTRAIFSEGCKAVAAGLNPMDLRRGTQLAVDHVVK
VLNDISRAVTSKAEVSQVGTISANGEKAIGDLLADAMERVGKEGVITVQD
GKTLHNELEVVEGMKFDRGYISPYFITDNKTQAAELENPYILLVEKKIAS
IQSLIPLLEMVVKTQRPLLIIAEDVESEALATLVVNKLRAGIKVAAVKAP
GFGDNRKATLQDIAVLTGGQVISEDLGLKVENVTEDMLGTSKKVTVSKDD
TLILHGNGAREAIDERCVLLKDSIAATASDYEKEKLQERLAKLSGGVAVI
KVGGGSEVEVNEKKDRVVDALNATRAAVEQGIVPGGGWHCCGPASSWRRS
RVN*
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mRNA from alignment at chr14:532661..535397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01730.1 ID=NO14G01730.1|Name=NO14G01730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2737bp|location=Sequence derived from alignment at chr14:532661..535397- (Nannochloropsis oceanica)
TTGTGTGTGGCACGGTTGCATGATGCAGGATACTTCGCTCCGCACAGAAT GCCTTTGTTCCTGTTCGTACATGCCTGGCCCTCCCTTGGCATCTATTGCT CGAGAGGAGCCCCATACTGACGCCAAACACTGCCGATAGACTTATTCTGT CGCCCTGCTTTCTCCCCTCCAGTCCTTCCTACCACAGAACAACTTCATCA TCATGCTCCGACAAATCTTGCGCAGGGCCCCAACCCGGGCGCTCACGGTG CAAATGCGTGGCATGGCAGGTAAACTATTGGGTGGCGAATAGGATTTGGT GGGCTTGCTATAGACAGCGCATGGAGCAGAGTGTGGCGGAACCAGCCGGA GATGCAGGAAGGTGCCGTGTGCGGCACGCGGCAGGCCAGGCAAGGGGCAG AGTTCGCACACGCTCCTTATTTTGATGAGATGAAGCCTTATTTCCGAGTC GTAAAACTAAGAAAGTAAAAGTAGTTTGTTTTTGTGTATTGTGTTCTTCT GTATCTCAGATCATCCTACGCCTCCCCCATTGTCTCCTCACACAACATCC CTCATCCCCTCCCTTTCCTCTCACACCTGAAAAGGCGGCAAGGACGTCCG CTTCGGCGTGGAAGGCCGCGCACAGATGCTCATGGGCGTCGACAAGCTAG CCGACGCCGTGCAAGTCACTTTGGGTCCAAAGGGTCGCAACGCCATTATT GACCAGCCTTTTGGAGCCCCCAAGATTACGAAGGACGGAGTCACCGTTGC AAAGAGCATTGAGTTCAAGGAGCGCTTCGTCAACATGGGTGCGGCGCTTG TACGGCAGGTGGCGAGCAAGACCAATGACATTGCTGGGGATGGAACGACG ACAGCCACGGTCCTTACCCGGGCGATTTTCTCCGAGGGCTGCAAAGCTGT GGCTGCTGGGCTGAACCCAATGGACCTGCGAAGGGGGACGCAGTTGGCGG TGGATCACGTGGTGAAGGTGTTAAATGATATTTCGCGCGCTGTGACTAGT AAGGCGGAGGTGTCTCAGGTGGGGACAATCTCGGCCAACGGAGAGAAGGC CATTGGAGATTTGCTGGCGGATGCGATGGAGAGGGTGGGGAAGGAGGGCG TGATCACCGTGCAGGACGGCAAGACCCTGCACAACGAGTTGGAGGTGGTG GAAGGGATGAAATTCGATCGTGGGTACATCTCTCCTTATTTCATCACAGA CAACAAGACTCAGGCGGCCGAGCTTGAAAACCCTTACATCCTGTTAGTCG AGAAGAAAATCGCATCCATCCAATCCCTCATCCCTCTATTGGAAATGGTG GTGAAGACCCAGCGTCCCCTTCTCATCATTGCGGAAGACGTCGAGTCCGA AGCCTTGGCGACGCTGGTCGTAAACAAACTGAGGGCAGGAATCAAAGTGG CTGCTGTGAAGGCTCCCGGTTTTGGGGATAACAGGAAGGCGACTTTGCAA GATATTGCCGTCTTGACGGGCGGGCAGGTGATCAGTGAGGACTTGGGGTT GAAAGTCGAGAATGTGACGGAGGACATGTTGGGGACGTCCAAAAAGGTGA CGGTCTCGAAAGATGACACCTTAATTTTACATGGCAATGGCGCGCGGGAG GCGATCGACGAGCGGTGCGTGTTGCTTAAGGATTCCATCGCTGCCACTGC ATCTGACTACGAGAAGGAGAAGCTGCAGGAACGCCTAGCCAAACTCTCGG GGGGGGTGGCGGTGATCAAGGTTGGTGGTGGAAGCGAGGTTGAGGTGAAC GAGAAGAAGGACAGAGTGGTGGATGCCTTGAACGCGACCAGGGCGGCTGT CGAGCAAGGAATTGTCCCGGGGGGGGGTTGGCACTGCTGTGGGCCAGCAA GCAGTTGGAGGAGGTCAAGAGTAAACTGACCAACATGGACCAGAGAATCG GCGTGGAGATCATCGAGAAGGCACTCAAGGCACCCGCGAGGTCGATCGCA AACAATGCTGGGGTGGAGGGGGCGGTTGTGGTGGGGGAGTTGCTGAAGAA GGAAAAGCCGGAGTTGGGGTACAACGCCCAGACTGACGAGTACGTCAATA TGTTCGAGGCGGGGATCATTGACCCGACCAAGGTGGTAAGGACTGCTTTG GTAGATGCCCAGTCGGTTGCTGCCTTGATGATTACGACCGAGGCAATGAT TGCAGATTTGCCCAAGGAGGAGGGGGAGGGGGGGGGGATGCCGGGAATGG GTGGGATGGGTGGGATGGGCGGGATGGGCGGGATGGGGTTCTAATGTGAG AGAAAGTGAGTACCGAGTATAGAAGTTGAGGAGTATCGAATGTTTGGTAC ATACACTATTTCATTGAAGGGGTGTAAGCCCTGTGTGTGAATGTGTGTGT CGGGGAATGGGGGGTTAGCGACTGACGGGCGGACTCATGGGGTGTATCTG GTACGGTGTGTGGCGGGAATGAAGAGAGAGTGTGTGAGAGCGAGAAAGAG AAAGAGAAAGAGTAGACGTATCACGATTTTGTGTCCTCCAAGATGTGACT GCCGGTGCTTCTTTTCATATTTTCTCTCTCCTTAGAACTTGAAAATATGT CCTCATAGCGAGGCAGTGCATGATGGGAGGAGCAACAACCAAACATAAAA GGAAAATTAAGGCGAAAGACAATCTACGACCTAAAAGACAGGCCCCAAAT TTTGCGAGAGGGTGGTGTCATGGGGCAGTTGCGGACAACGTGCGGACTGT CTTGTGCATCCAAATACAAACTCTCGTCACATCCTTT
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Coding sequence (CDS) from alignment at chr14:532661..535397-

>NO14G01730.1 ID=NO14G01730.1|Name=NO14G01730.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr14:532661..535397- (Nannochloropsis oceanica)
ATGCTCCGACAAATCTTGCGCAGGGCCCCAACCCGGGCGCTCACGGTGCA
AATGCGTGGCATGGCAGGCGGCAAGGACGTCCGCTTCGGCGTGGAAGGCC
GCGCACAGATGCTCATGGGCGTCGACAAGCTAGCCGACGCCGTGCAAGTC
ACTTTGGGTCCAAAGGGTCGCAACGCCATTATTGACCAGCCTTTTGGAGC
CCCCAAGATTACGAAGGACGGAGTCACCGTTGCAAAGAGCATTGAGTTCA
AGGAGCGCTTCGTCAACATGGGTGCGGCGCTTGTACGGCAGGTGGCGAGC
AAGACCAATGACATTGCTGGGGATGGAACGACGACAGCCACGGTCCTTAC
CCGGGCGATTTTCTCCGAGGGCTGCAAAGCTGTGGCTGCTGGGCTGAACC
CAATGGACCTGCGAAGGGGGACGCAGTTGGCGGTGGATCACGTGGTGAAG
GTGTTAAATGATATTTCGCGCGCTGTGACTAGTAAGGCGGAGGTGTCTCA
GGTGGGGACAATCTCGGCCAACGGAGAGAAGGCCATTGGAGATTTGCTGG
CGGATGCGATGGAGAGGGTGGGGAAGGAGGGCGTGATCACCGTGCAGGAC
GGCAAGACCCTGCACAACGAGTTGGAGGTGGTGGAAGGGATGAAATTCGA
TCGTGGGTACATCTCTCCTTATTTCATCACAGACAACAAGACTCAGGCGG
CCGAGCTTGAAAACCCTTACATCCTGTTAGTCGAGAAGAAAATCGCATCC
ATCCAATCCCTCATCCCTCTATTGGAAATGGTGGTGAAGACCCAGCGTCC
CCTTCTCATCATTGCGGAAGACGTCGAGTCCGAAGCCTTGGCGACGCTGG
TCGTAAACAAACTGAGGGCAGGAATCAAAGTGGCTGCTGTGAAGGCTCCC
GGTTTTGGGGATAACAGGAAGGCGACTTTGCAAGATATTGCCGTCTTGAC
GGGCGGGCAGGTGATCAGTGAGGACTTGGGGTTGAAAGTCGAGAATGTGA
CGGAGGACATGTTGGGGACGTCCAAAAAGGTGACGGTCTCGAAAGATGAC
ACCTTAATTTTACATGGCAATGGCGCGCGGGAGGCGATCGACGAGCGGTG
CGTGTTGCTTAAGGATTCCATCGCTGCCACTGCATCTGACTACGAGAAGG
AGAAGCTGCAGGAACGCCTAGCCAAACTCTCGGGGGGGGTGGCGGTGATC
AAGGTTGGTGGTGGAAGCGAGGTTGAGGTGAACGAGAAGAAGGACAGAGT
GGTGGATGCCTTGAACGCGACCAGGGCGGCTGTCGAGCAAGGAATTGTCC
CGGGGGGGGGTTGGCACTGCTGTGGGCCAGCAAGCAGTTGGAGGAGGTCA
AGAGTAAACTGA
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Synonyms
Publications