NO14G01670.1, NO14G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01670.1
Unique NameNO14G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1776
Alignment locationchr14:517464..519239 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:517464..519239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01670.1 vs.
Match: EWM24666.1 (amidotransferase a subunit for asp-trna glu-trna [Nannochloropsis gaditana])

HSP 1 Score: 689.5 bits (1778), Expect = 9.200e-195
Identity = 383/602 (63.62%), Postives = 460/602 (76.41%), Query Frame = 0 
Query:    3 PTRLVLCGPSTSRRRPGHWLPRRPPAATTTTIDLCSISSRPP-------RT-YACQPFPLPPSVVEAAAAIQQGEQTPTQILQQCLQRQREIAGLNAFVTTMETAALAQAAAASQSTAGGRPLHGIPIAVKDNFCTAGVRTTASSRMLADFVPPYSATAVARLEAAGAVVVGKTNMDEFGMGSATLFSHFGETVSPWSPSPSSSSSPSSSAYCGGLRLTAGGSSGGSAVAVATGACLAALGSDTGGSIRQPAALCGLVGLKPSYGRISRHGLIAYASSLDCPGLLTRTVADAALVLDAVAGPDPLGDSSCWDGPHQLCFTEALQTA------GLNFSLRGLKVGLAAEFGVRELEASTVTAWEEGARLLQDAGAEVMPVSVPSIPLALPAYFVIACAEASSNLARYDGIRYGHRASSAWADSQGDSSSSATESEREAKDQGMLHNFITVSRSEGFGPEVQRRILAGCRVLSARTYSAYYEKALAARVRIRQDMAQAMSQVDVILTPVTPSGPFPLTTPAEPAALMLNDIMTVPASLAGLPAVSVPISVVPSSFAADVPVPLGLQLIGRPFRERELLYVAQALEARCDFAKQIPKYVLKGRRT 591
            P+R +    S  R R G   PRRP           S  S PP       RT Y+ Q      S+VE AAAI++G   P  ++Q+CL RQ+E +GLN+FVT +  AA  +AA A + +    PLHGIPIAVKDNFCTAGVRTTASSRMLA+FVPPYSATAV+RLEA+GA+VVGKTNMDEFGMGSATLFSHFG+T++PWS +      P         RL AGGSSGGSAVAVATG+ LAALGSDTGGS+RQPAA CGLVGLKP+YGR+SRHGLIAYASSLDCPG+LTRTVADAALVLD VAG DPL DS+C + PH+ CF   ++ A      GL  SLRGLKVG+ AEF ++ELE S VTAWEEGARLL+DAGA+V+PVSVPSIPLALP YFVIACAEASSNLARYDGIR+G R S +   S+      + ++E +  DQ  LH+FIT SRS+GFG EVQRR+++GCRVLSA+ Y+ YYEKALAAR+R+R++M  A+S VDV+LTPVTP+GPFPLTTPAEPAALM+ND+MTVPASLAGLPA++VP+ + PSSF   +PVP+GLQLIGR   E++LL VA+ALE RC+F+++IP YV+K   T
Sbjct:   19 PSRALGNSRSRKRLRDG---PRRPVDIRRAQHACPSSPSSPPGLQRRVTRTNYSTQSQQSAVSMVEIAAAIRKGNADPFSVMQRCLSRQQETSGLNSFVTVLRHAAEKEAAVAGRHSVMKGPLHGIPIAVKDNFCTAGVRTTASSRMLANFVPPYSATAVSRLEASGAIVVGKTNMDEFGMGSATLFSHFGKTINPWSQAAEKGDKP---------RLAAGGSSGGSAVAVATGSALAALGSDTGGSVRQPAAFCGLVGLKPTYGRVSRHGLIAYASSLDCPGVLTRTVADAALVLDVVAGRDPL-DSTCLEQPHRPCFDRTMEAAASSRAAGLAVSLRGLKVGIPAEFAIQELEGSAVTAWEEGARLLRDAGADVLPVSVPSIPLALPTYFVIACAEASSNLARYDGIRFGFRGSKSLRASRSKEGIGSADTEED--DQRALHDFITASRSQGFGDEVQRRVISGCRVLSAQAYATYYEKALAARIRLRREMNTALSHVDVLLTPVTPTGPFPLTTPAEPAALMVNDVMTVPASLAGLPAIAVPVDLAPSSFVPGLPVPVGLQLIGRHLCEQQLLIVARALEVRCNFSERIPDYVVKATFT 605
The following BLAST results are available for this feature:
BLAST of NO14G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24666.19.200e-19563.62amidotransferase a subunit for asp-trna glu-trna [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01670NO14G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01670.1NO14G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01670.1.cds1NO14G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01670.1 ID=NO14G01670.1|Name=NO14G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp
ATGCGGCCGACGCGCTTAGTCCTTTGTGGGCCCTCGACGAGCAGAAGGAG
ACCCGGGCACTGGCTCCCACGTCGTCCTCCTGCCGCAACGACCACAACAA
TAGATCTCTGCTCCATTTCCTCTCGACCTCCCCGCACCTACGCCTGCCAG
CCCTTTCCATTGCCTCCCTCCGTGGTCGAGGCCGCGGCGGCCATCCAGCA
GGGTGAGCAGACACCCACCCAGATCCTGCAGCAATGCCTGCAGCGCCAGC
GAGAGATTGCAGGCCTCAACGCCTTTGTCACCACGATGGAAACAGCAGCC
CTGGCGCAGGCAGCAGCGGCGTCGCAGAGTACAGCAGGAGGGCGGCCGCT
GCACGGGATTCCTATCGCGGTTAAGGACAATTTCTGTACAGCAGGTGTAC
GGACGACAGCCTCGTCCAGAATGCTGGCAGATTTCGTCCCTCCGTACTCG
GCTACTGCCGTGGCACGTCTCGAGGCGGCTGGGGCAGTGGTGGTGGGCAA
GACCAACATGGATGAATTTGGCATGGGCTCAGCCACGCTCTTTTCTCACT
TTGGTGAGACTGTCAGTCCATGGTCACCATCACCCTCATCATCCTCATCA
CCCTCGTCGTCAGCATACTGTGGTGGTCTCCGACTCACAGCTGGGGGCAG
CTCGGGAGGGAGTGCCGTAGCAGTAGCGACGGGTGCGTGTCTGGCGGCCT
TGGGATCGGACACGGGAGGCTCTATACGCCAACCCGCGGCCCTGTGCGGG
CTTGTGGGGCTCAAGCCCAGCTACGGACGCATATCACGCCATGGACTCAT
CGCCTATGCCTCTTCCTTGGACTGCCCTGGCCTGCTGACGCGGACGGTGG
CTGATGCAGCCTTGGTGCTGGACGCGGTAGCGGGACCTGACCCGCTGGGA
GACTCTTCCTGCTGGGACGGGCCGCACCAGTTGTGCTTCACCGAGGCCTT
GCAGACAGCTGGCCTGAACTTTTCACTTCGCGGCCTGAAGGTGGGGCTGG
CCGCGGAATTTGGGGTCCGGGAGCTGGAGGCCAGCACGGTGACAGCATGG
GAGGAAGGGGCGCGACTGCTGCAGGATGCAGGTGCCGAGGTGATGCCTGT
GTCCGTACCCTCTATCCCCCTGGCTCTCCCGGCTTACTTTGTCATTGCCT
GTGCCGAGGCATCCTCAAACCTAGCGCGCTACGACGGCATTCGGTACGGC
CATCGCGCTTCGAGTGCTTGGGCAGACAGTCAGGGAGACAGCAGCAGCAG
TGCGACTGAGAGCGAGAGAGAGGCGAAGGACCAAGGCATGCTGCATAATT
TCATTACTGTCTCCCGCTCCGAAGGTTTCGGGCCCGAGGTCCAGCGCCGC
ATCCTCGCCGGCTGCCGAGTCCTATCGGCTCGCACCTACTCGGCCTACTA
TGAAAAGGCGCTGGCAGCCCGTGTCCGCATCCGTCAGGATATGGCCCAGG
CGATGAGCCAGGTGGACGTCATCCTTACCCCCGTCACGCCCTCGGGCCCC
TTCCCCCTCACCACCCCAGCCGAGCCGGCGGCCCTGATGCTCAACGACAT
CATGACTGTCCCGGCCAGCCTAGCTGGGCTGCCGGCCGTCTCGGTGCCCA
TATCCGTGGTGCCTTCATCCTTCGCAGCCGACGTACCCGTGCCTTTGGGT
TTGCAGCTGATAGGACGTCCCTTCAGGGAGCGGGAGTTGCTGTACGTGGC
GCAGGCTTTGGAGGCCCGGTGTGATTTTGCAAAGCAGATTCCCAAGTATG
TGCTCAAGGGCAGGCGCACGATATGA
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protein sequence of NO14G01670.1

>NO14G01670.1-protein ID=NO14G01670.1-protein|Name=NO14G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MRPTRLVLCGPSTSRRRPGHWLPRRPPAATTTTIDLCSISSRPPRTYACQ
PFPLPPSVVEAAAAIQQGEQTPTQILQQCLQRQREIAGLNAFVTTMETAA
LAQAAAASQSTAGGRPLHGIPIAVKDNFCTAGVRTTASSRMLADFVPPYS
ATAVARLEAAGAVVVGKTNMDEFGMGSATLFSHFGETVSPWSPSPSSSSS
PSSSAYCGGLRLTAGGSSGGSAVAVATGACLAALGSDTGGSIRQPAALCG
LVGLKPSYGRISRHGLIAYASSLDCPGLLTRTVADAALVLDAVAGPDPLG
DSSCWDGPHQLCFTEALQTAGLNFSLRGLKVGLAAEFGVRELEASTVTAW
EEGARLLQDAGAEVMPVSVPSIPLALPAYFVIACAEASSNLARYDGIRYG
HRASSAWADSQGDSSSSATESEREAKDQGMLHNFITVSRSEGFGPEVQRR
ILAGCRVLSARTYSAYYEKALAARVRIRQDMAQAMSQVDVILTPVTPSGP
FPLTTPAEPAALMLNDIMTVPASLAGLPAVSVPISVVPSSFAADVPVPLG
LQLIGRPFRERELLYVAQALEARCDFAKQIPKYVLKGRRTI*
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mRNA from alignment at chr14:517464..519239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01670.1 ID=NO14G01670.1|Name=NO14G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp|location=Sequence derived from alignment at chr14:517464..519239+ (Nannochloropsis oceanica)
ATGCGGCCGACGCGCTTAGTCCTTTGTGGGCCCTCGACGAGCAGAAGGAG
ACCCGGGCACTGGCTCCCACGTCGTCCTCCTGCCGCAACGACCACAACAA
TAGATCTCTGCTCCATTTCCTCTCGACCTCCCCGCACCTACGCCTGCCAG
CCCTTTCCATTGCCTCCCTCCGTGGTCGAGGCCGCGGCGGCCATCCAGCA
GGGTGAGCAGACACCCACCCAGATCCTGCAGCAATGCCTGCAGCGCCAGC
GAGAGATTGCAGGCCTCAACGCCTTTGTCACCACGATGGAAACAGCAGCC
CTGGCGCAGGCAGCAGCGGCGTCGCAGAGTACAGCAGGAGGGCGGCCGCT
GCACGGGATTCCTATCGCGGTTAAGGACAATTTCTGTACAGCAGGTGTAC
GGACGACAGCCTCGTCCAGAATGCTGGCAGATTTCGTCCCTCCGTACTCG
GCTACTGCCGTGGCACGTCTCGAGGCGGCTGGGGCAGTGGTGGTGGGCAA
GACCAACATGGATGAATTTGGCATGGGCTCAGCCACGCTCTTTTCTCACT
TTGGTGAGACTGTCAGTCCATGGTCACCATCACCCTCATCATCCTCATCA
CCCTCGTCGTCAGCATACTGTGGTGGTCTCCGACTCACAGCTGGGGGCAG
CTCGGGAGGGAGTGCCGTAGCAGTAGCGACGGGTGCGTGTCTGGCGGCCT
TGGGATCGGACACGGGAGGCTCTATACGCCAACCCGCGGCCCTGTGCGGG
CTTGTGGGGCTCAAGCCCAGCTACGGACGCATATCACGCCATGGACTCAT
CGCCTATGCCTCTTCCTTGGACTGCCCTGGCCTGCTGACGCGGACGGTGG
CTGATGCAGCCTTGGTGCTGGACGCGGTAGCGGGACCTGACCCGCTGGGA
GACTCTTCCTGCTGGGACGGGCCGCACCAGTTGTGCTTCACCGAGGCCTT
GCAGACAGCTGGCCTGAACTTTTCACTTCGCGGCCTGAAGGTGGGGCTGG
CCGCGGAATTTGGGGTCCGGGAGCTGGAGGCCAGCACGGTGACAGCATGG
GAGGAAGGGGCGCGACTGCTGCAGGATGCAGGTGCCGAGGTGATGCCTGT
GTCCGTACCCTCTATCCCCCTGGCTCTCCCGGCTTACTTTGTCATTGCCT
GTGCCGAGGCATCCTCAAACCTAGCGCGCTACGACGGCATTCGGTACGGC
CATCGCGCTTCGAGTGCTTGGGCAGACAGTCAGGGAGACAGCAGCAGCAG
TGCGACTGAGAGCGAGAGAGAGGCGAAGGACCAAGGCATGCTGCATAATT
TCATTACTGTCTCCCGCTCCGAAGGTTTCGGGCCCGAGGTCCAGCGCCGC
ATCCTCGCCGGCTGCCGAGTCCTATCGGCTCGCACCTACTCGGCCTACTA
TGAAAAGGCGCTGGCAGCCCGTGTCCGCATCCGTCAGGATATGGCCCAGG
CGATGAGCCAGGTGGACGTCATCCTTACCCCCGTCACGCCCTCGGGCCCC
TTCCCCCTCACCACCCCAGCCGAGCCGGCGGCCCTGATGCTCAACGACAT
CATGACTGTCCCGGCCAGCCTAGCTGGGCTGCCGGCCGTCTCGGTGCCCA
TATCCGTGGTGCCTTCATCCTTCGCAGCCGACGTACCCGTGCCTTTGGGT
TTGCAGCTGATAGGACGTCCCTTCAGGGAGCGGGAGTTGCTGTACGTGGC
GCAGGCTTTGGAGGCCCGGTGTGATTTTGCAAAGCAGATTCCCAAGTATG
TGCTCAAGGGCAGGCGCACGATATGA
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Coding sequence (CDS) from alignment at chr14:517464..519239+

>NO14G01670.1 ID=NO14G01670.1|Name=NO14G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at chr14:517464..519239+ (Nannochloropsis oceanica)
ATGCGGCCGACGCGCTTAGTCCTTTGTGGGCCCTCGACGAGCAGAAGGAG
ACCCGGGCACTGGCTCCCACGTCGTCCTCCTGCCGCAACGACCACAACAA
TAGATCTCTGCTCCATTTCCTCTCGACCTCCCCGCACCTACGCCTGCCAG
CCCTTTCCATTGCCTCCCTCCGTGGTCGAGGCCGCGGCGGCCATCCAGCA
GGGTGAGCAGACACCCACCCAGATCCTGCAGCAATGCCTGCAGCGCCAGC
GAGAGATTGCAGGCCTCAACGCCTTTGTCACCACGATGGAAACAGCAGCC
CTGGCGCAGGCAGCAGCGGCGTCGCAGAGTACAGCAGGAGGGCGGCCGCT
GCACGGGATTCCTATCGCGGTTAAGGACAATTTCTGTACAGCAGGTGTAC
GGACGACAGCCTCGTCCAGAATGCTGGCAGATTTCGTCCCTCCGTACTCG
GCTACTGCCGTGGCACGTCTCGAGGCGGCTGGGGCAGTGGTGGTGGGCAA
GACCAACATGGATGAATTTGGCATGGGCTCAGCCACGCTCTTTTCTCACT
TTGGTGAGACTGTCAGTCCATGGTCACCATCACCCTCATCATCCTCATCA
CCCTCGTCGTCAGCATACTGTGGTGGTCTCCGACTCACAGCTGGGGGCAG
CTCGGGAGGGAGTGCCGTAGCAGTAGCGACGGGTGCGTGTCTGGCGGCCT
TGGGATCGGACACGGGAGGCTCTATACGCCAACCCGCGGCCCTGTGCGGG
CTTGTGGGGCTCAAGCCCAGCTACGGACGCATATCACGCCATGGACTCAT
CGCCTATGCCTCTTCCTTGGACTGCCCTGGCCTGCTGACGCGGACGGTGG
CTGATGCAGCCTTGGTGCTGGACGCGGTAGCGGGACCTGACCCGCTGGGA
GACTCTTCCTGCTGGGACGGGCCGCACCAGTTGTGCTTCACCGAGGCCTT
GCAGACAGCTGGCCTGAACTTTTCACTTCGCGGCCTGAAGGTGGGGCTGG
CCGCGGAATTTGGGGTCCGGGAGCTGGAGGCCAGCACGGTGACAGCATGG
GAGGAAGGGGCGCGACTGCTGCAGGATGCAGGTGCCGAGGTGATGCCTGT
GTCCGTACCCTCTATCCCCCTGGCTCTCCCGGCTTACTTTGTCATTGCCT
GTGCCGAGGCATCCTCAAACCTAGCGCGCTACGACGGCATTCGGTACGGC
CATCGCGCTTCGAGTGCTTGGGCAGACAGTCAGGGAGACAGCAGCAGCAG
TGCGACTGAGAGCGAGAGAGAGGCGAAGGACCAAGGCATGCTGCATAATT
TCATTACTGTCTCCCGCTCCGAAGGTTTCGGGCCCGAGGTCCAGCGCCGC
ATCCTCGCCGGCTGCCGAGTCCTATCGGCTCGCACCTACTCGGCCTACTA
TGAAAAGGCGCTGGCAGCCCGTGTCCGCATCCGTCAGGATATGGCCCAGG
CGATGAGCCAGGTGGACGTCATCCTTACCCCCGTCACGCCCTCGGGCCCC
TTCCCCCTCACCACCCCAGCCGAGCCGGCGGCCCTGATGCTCAACGACAT
CATGACTGTCCCGGCCAGCCTAGCTGGGCTGCCGGCCGTCTCGGTGCCCA
TATCCGTGGTGCCTTCATCCTTCGCAGCCGACGTACCCGTGCCTTTGGGT
TTGCAGCTGATAGGACGTCCCTTCAGGGAGCGGGAGTTGCTGTACGTGGC
GCAGGCTTTGGAGGCCCGGTGTGATTTTGCAAAGCAGATTCCCAAGTATG
TGCTCAAGGGCAGGCGCACGATATGA
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Synonyms
Publications