NO14G01650.1, NO14G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01650.1
Unique NameNO14G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length447
Alignment locationchr14:514885..515583 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:514885..515583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G01650.1 vs.
Match: EWM24661.1 (histidine triad nucleotide binding protein [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 5.500e-48
Identity = 87/150 (58.00%), Postives = 117/150 (78.00%), Query Frame = 0
Query:    1 MGGLLSKGIEYEADGMTVRQCLFCDIAADKPGLRQTAVAFEDDKVVVFAPLEPCASEHWLVVPRAHHRSASTLTANDLPLLVHMKNIGSQILEQKQPGKSPQDTRFCFHVEPFNSIL---------PFLSPLSSWKYKVGTQWCWSYDSV 142
            MG LL+KG+ YEAD +T+++CLFCDIAADK G R+T +A+ED++VVVFAPLE CA EHWLVVPRAH R+A+TL   DLP+L +M+++G Q+L+ KQP  +    +FCFH+EPFNSI          PF++P+S++KYK GT WCWS+D+V
Sbjct:   11 MGNLLTKGVTYEADNVTIKRCLFCDIAADKQGSRKTPIAYEDEQVVVFAPLEKCALEHWLVVPRAHIRNATTLQPTDLPILKYMRDVGYQVLKDKQPDVNLSKMQFCFHIEPFNSIAHIHLHCQVPPFITPISAFKYKEGTSWCWSHDAV 160          
The following BLAST results are available for this feature:
BLAST of NO14G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24661.15.500e-4858.00histidine triad nucleotide binding protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01650NO14G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01650.1NO14G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01650.1.cds1NO14G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01650.1.cds2NO14G01650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01650.1.cds3NO14G01650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01650.1 ID=NO14G01650.1|Name=NO14G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=447bp
ATGGGCGGGCTGCTAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGAC
GGTGAGACAATGTCTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTA
GACAGACAGCTGTGGCTTTTGAGGACGACAAGGTGGTGGTCTTTGCCCCC
CTGGAGCCATGCGCCTCAGAGCACTGGCTGGTCGTACCTCGGGCTCACCA
TCGTAGTGCTAGCACCTTGACGGCTAATGACTTACCTCTCCTGGTGCACA
TGAAAAACATTGGCTCCCAAATACTCGAACAAAAACAACCCGGGAAGAGC
CCTCAAGACACCCGCTTCTGCTTCCATGTCGAGCCGTTTAATTCAATCTT
GCCTTTCTTATCGCCCCTGTCATCGTGGAAGTACAAGGTCGGCACACAGT
GGTGCTGGAGCTATGACTCTGTGAGATTGCGTCTGGAAGAGGAATAA
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protein sequence of NO14G01650.1

>NO14G01650.1-protein ID=NO14G01650.1-protein|Name=NO14G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MGGLLSKGIEYEADGMTVRQCLFCDIAADKPGLRQTAVAFEDDKVVVFAP
LEPCASEHWLVVPRAHHRSASTLTANDLPLLVHMKNIGSQILEQKQPGKS
PQDTRFCFHVEPFNSILPFLSPLSSWKYKVGTQWCWSYDSVRLRLEEE*
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mRNA from alignment at chr14:514885..515583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01650.1 ID=NO14G01650.1|Name=NO14G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=699bp|location=Sequence derived from alignment at chr14:514885..515583- (Nannochloropsis oceanica)
ATGGGCGGGCTGCTAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGAC GGTGAGACAATGTCTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTA GACAGACAGCTGTGGCTTTTGAGGACGACAAGGTGCGATTTGTGTGTGTG GACGACAACGATCATGAGCCATCCTCTATTTCACCTCCATCTCCCATCCT TCATCCTTTCATCTTTCATCCTCATCCTCATCCTTCACCTCCTAGTATAG GTGGTGGTCTTTGCCCCCCTGGAGCCATGCGCCTCAGAGCACTGGCTGGT CGTACCTCGGGCTCACCATCGTAGTGCTAGCACCTTGACGGCTAATGACT TACCTCTCCTGGTGCACATGAAAAACATTGGCTCCCAAATACTCGAACAA AAACAACCCGGGAAGAGCCCTCAAGACACCCGCTTCTGCTTCCATGTCGA GCCGTTTAATTCAAGTAAGTTTTCCTGTCTACTCTTGCATTATCATCATT CGAGAATGAGGGGGACTCCTCACATGATTCGTCGCCAGCATCTCACACAC TGCTTTTTCTATTTCTTGTAGTTGCTCACTTACACTTACACTGCCAAGTC TTGCCTTTCTTATCGCCCCTGTCATCGTGGAAGTACAAGGTCGGCACACA GTGGTGCTGGAGCTATGACTCTGTGAGATTGCGTCTGGAAGAGGAATAA
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Coding sequence (CDS) from alignment at chr14:514885..515583-

>NO14G01650.1 ID=NO14G01650.1|Name=NO14G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at chr14:514885..515583- (Nannochloropsis oceanica)
ATGGGCGGGCTGCTAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGAC
GGTGAGACAATGTCTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTA
GACAGACAGCTGTGGCTTTTGAGGACGACAAGGTGGTGGTCTTTGCCCCC
CTGGAGCCATGCGCCTCAGAGCACTGGCTGGTCGTACCTCGGGCTCACCA
TCGTAGTGCTAGCACCTTGACGGCTAATGACTTACCTCTCCTGGTGCACA
TGAAAAACATTGGCTCCCAAATACTCGAACAAAAACAACCCGGGAAGAGC
CCTCAAGACACCCGCTTCTGCTTCCATGTCGAGCCGTTTAATTCAATCTT
GCCTTTCTTATCGCCCCTGTCATCGTGGAAGTACAAGGTCGGCACACAGT
GGTGCTGGAGCTATGACTCTGTGAGATTGCGTCTGGAAGAGGAATAA
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Synonyms
Publications