NO14G01640.1, NO14G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01640.1
Unique NameNO14G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1080
Alignment locationchr14:513484..514563 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:513484..514563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01640.1 vs.
Match: EWM24649.1 (biotin lipoate protein ligase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 318.2 bits (814), Expect = 3.400e-83
Identity = 194/351 (55.27%), Postives = 235/351 (66.95%), Query Frame = 0 
Query:   16 LLLALTWACCSVTAVCAAASQGTTFASPACFIARARASPASSLLRTVLLTATTV----MASSTSTLSSPTR---STSLSSSSTGVDIETSNGKRLHFVWSPEVNSTQDAMKALLVSSTGEALSRAGVDVLALGAGMQTKGRGTSGRAWVGIVGNAFLTLALPRSAVSLLPYAITLLPLRIGTLVARAIIHVLPTSEARANVHLKWPNDVLLSDEKVSGLLVEMDSSSAYYLVGIGVNVVQAPPVPAAGADRGRTATCLADHGLPVSDADTAKDLSISIARAVTEWIGQAATEDTAELVVADWEGLATWGKEYRRRDDDVVVTPLGLEMDGRLRVRDQATGAIHYLVAEYLH 360
            L L +  ACC V A     + GT  A  A F+A   +S  S  L   ++ +       + S ++      R   +TS+S+ + G DIE  +G  LHFVW PEV STQDAM+ LL SS  ++LS+ GVD LAL AG Q +GRGTSGRAW+G  GN FLT+ALP   +S L Y ITLLPLR+GTL+AR I+ +LP  EA+A V LKWPNDVLL D KVSGLL+EMD +S+YYLVGIGVNV QAP VP+ GADRGR A CLA  GL     DTA+DLSI+IA ++T W+G  + EDTA+ V+ADWE LATWGK Y  RD   VV PL LE DGRLRVRD  +GA   L AEYLH
Sbjct:   13 LRLTVACACCCVFA----NTSGT--AVSAAFVAVGFSSSVSFRLAPSIVPSRNPPVLGIQSGSARAGKERRCHSATSMSAFAAGEDIEVGDGTLLHFVWVPEVRSTQDAMRTLLASSRRDSLSQKGVDALALSAGSQIQGRGTSGRAWMGGAGNMFLTVALPARTLSALTYPITLLPLRMGTLIAREIVRILPHPEAQARVQLKWPNDVLLDDGKVSGLLIEMDGTSSYYLVGIGVNVAQAPHVPSLGADRGRRAACLAQCGLEGRGGDTARDLSIAIAVSITTWLG-GSQEDTADSVIADWEKLATWGKVYDLRDGGAVV-PLALETDGRLRVRDLTSGATRLLTAEYLH 355
The following BLAST results are available for this feature:
BLAST of NO14G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24649.13.400e-8355.27biotin lipoate protein ligase-like protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01640NO14G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01640.1NO14G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01640.1.cds1NO14G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01640.1 ID=NO14G01640.1|Name=NO14G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp
ATGATCTGGCGGCAAGGACAAATACCGCCGCCGCCCTCTTGCTTTCTTCT
TTTGGCTTTGACCTGGGCTTGCTGCAGCGTGACTGCCGTCTGCGCGGCAG
CTAGTCAAGGCACCACGTTTGCCTCTCCTGCTTGTTTCATTGCCCGAGCA
AGGGCCTCTCCTGCCTCATCGCTGCTCCGAACTGTCCTTCTCACAGCGAC
GACTGTGATGGCATCCTCCACTTCCACCCTCAGCTCGCCAACCAGGAGCA
CAAGCCTCAGCAGCAGCAGTACTGGCGTGGACATCGAGACCAGCAACGGG
AAGCGTCTGCATTTTGTGTGGTCACCGGAGGTTAATTCGACGCAGGACGC
CATGAAAGCGTTGCTGGTGAGCAGCACGGGGGAGGCCTTGTCGAGGGCTG
GCGTGGACGTGCTAGCCTTGGGGGCCGGGATGCAGACCAAGGGCAGGGGT
ACAAGTGGCCGTGCTTGGGTCGGGATAGTGGGCAACGCTTTTCTGACTTT
GGCCCTTCCCAGAAGCGCCGTATCCTTATTGCCGTACGCTATCACTTTGC
TGCCTCTCCGCATAGGCACGCTGGTGGCACGCGCGATCATCCATGTCTTA
CCCACCTCGGAGGCCAGGGCCAACGTCCACCTCAAATGGCCCAATGACGT
GCTACTCAGTGACGAAAAGGTGAGCGGCTTGCTTGTAGAAATGGACAGCT
CATCAGCCTACTACCTGGTGGGTATTGGCGTCAACGTGGTCCAGGCGCCG
CCAGTGCCTGCCGCCGGCGCCGATCGGGGGCGCACCGCCACCTGCCTGGC
CGACCATGGCTTACCAGTCTCGGACGCGGATACTGCCAAGGACTTGTCGA
TTAGCATTGCCCGGGCCGTGACGGAGTGGATAGGCCAGGCGGCGACAGAA
GACACGGCGGAGCTCGTGGTAGCTGATTGGGAGGGGTTGGCTACATGGGG
CAAGGAGTACCGGCGGCGGGACGACGATGTGGTCGTTACTCCACTGGGGC
TGGAAATGGATGGCCGGCTGCGCGTTCGGGACCAGGCCACAGGCGCCATT
CACTACTTGGTTGCTGAGTACTTGCATTGA
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protein sequence of NO14G01640.1

>NO14G01640.1-protein ID=NO14G01640.1-protein|Name=NO14G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MIWRQGQIPPPPSCFLLLALTWACCSVTAVCAAASQGTTFASPACFIARA
RASPASSLLRTVLLTATTVMASSTSTLSSPTRSTSLSSSSTGVDIETSNG
KRLHFVWSPEVNSTQDAMKALLVSSTGEALSRAGVDVLALGAGMQTKGRG
TSGRAWVGIVGNAFLTLALPRSAVSLLPYAITLLPLRIGTLVARAIIHVL
PTSEARANVHLKWPNDVLLSDEKVSGLLVEMDSSSAYYLVGIGVNVVQAP
PVPAAGADRGRTATCLADHGLPVSDADTAKDLSISIARAVTEWIGQAATE
DTAELVVADWEGLATWGKEYRRRDDDVVVTPLGLEMDGRLRVRDQATGAI
HYLVAEYLH*
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mRNA from alignment at chr14:513484..514563+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01640.1 ID=NO14G01640.1|Name=NO14G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp|location=Sequence derived from alignment at chr14:513484..514563+ (Nannochloropsis oceanica)
ATGATCTGGCGGCAAGGACAAATACCGCCGCCGCCCTCTTGCTTTCTTCT
TTTGGCTTTGACCTGGGCTTGCTGCAGCGTGACTGCCGTCTGCGCGGCAG
CTAGTCAAGGCACCACGTTTGCCTCTCCTGCTTGTTTCATTGCCCGAGCA
AGGGCCTCTCCTGCCTCATCGCTGCTCCGAACTGTCCTTCTCACAGCGAC
GACTGTGATGGCATCCTCCACTTCCACCCTCAGCTCGCCAACCAGGAGCA
CAAGCCTCAGCAGCAGCAGTACTGGCGTGGACATCGAGACCAGCAACGGG
AAGCGTCTGCATTTTGTGTGGTCACCGGAGGTTAATTCGACGCAGGACGC
CATGAAAGCGTTGCTGGTGAGCAGCACGGGGGAGGCCTTGTCGAGGGCTG
GCGTGGACGTGCTAGCCTTGGGGGCCGGGATGCAGACCAAGGGCAGGGGT
ACAAGTGGCCGTGCTTGGGTCGGGATAGTGGGCAACGCTTTTCTGACTTT
GGCCCTTCCCAGAAGCGCCGTATCCTTATTGCCGTACGCTATCACTTTGC
TGCCTCTCCGCATAGGCACGCTGGTGGCACGCGCGATCATCCATGTCTTA
CCCACCTCGGAGGCCAGGGCCAACGTCCACCTCAAATGGCCCAATGACGT
GCTACTCAGTGACGAAAAGGTGAGCGGCTTGCTTGTAGAAATGGACAGCT
CATCAGCCTACTACCTGGTGGGTATTGGCGTCAACGTGGTCCAGGCGCCG
CCAGTGCCTGCCGCCGGCGCCGATCGGGGGCGCACCGCCACCTGCCTGGC
CGACCATGGCTTACCAGTCTCGGACGCGGATACTGCCAAGGACTTGTCGA
TTAGCATTGCCCGGGCCGTGACGGAGTGGATAGGCCAGGCGGCGACAGAA
GACACGGCGGAGCTCGTGGTAGCTGATTGGGAGGGGTTGGCTACATGGGG
CAAGGAGTACCGGCGGCGGGACGACGATGTGGTCGTTACTCCACTGGGGC
TGGAAATGGATGGCCGGCTGCGCGTTCGGGACCAGGCCACAGGCGCCATT
CACTACTTGGTTGCTGAGTACTTGCATTGA
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Coding sequence (CDS) from alignment at chr14:513484..514563+

>NO14G01640.1 ID=NO14G01640.1|Name=NO14G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr14:513484..514563+ (Nannochloropsis oceanica)
ATGATCTGGCGGCAAGGACAAATACCGCCGCCGCCCTCTTGCTTTCTTCT
TTTGGCTTTGACCTGGGCTTGCTGCAGCGTGACTGCCGTCTGCGCGGCAG
CTAGTCAAGGCACCACGTTTGCCTCTCCTGCTTGTTTCATTGCCCGAGCA
AGGGCCTCTCCTGCCTCATCGCTGCTCCGAACTGTCCTTCTCACAGCGAC
GACTGTGATGGCATCCTCCACTTCCACCCTCAGCTCGCCAACCAGGAGCA
CAAGCCTCAGCAGCAGCAGTACTGGCGTGGACATCGAGACCAGCAACGGG
AAGCGTCTGCATTTTGTGTGGTCACCGGAGGTTAATTCGACGCAGGACGC
CATGAAAGCGTTGCTGGTGAGCAGCACGGGGGAGGCCTTGTCGAGGGCTG
GCGTGGACGTGCTAGCCTTGGGGGCCGGGATGCAGACCAAGGGCAGGGGT
ACAAGTGGCCGTGCTTGGGTCGGGATAGTGGGCAACGCTTTTCTGACTTT
GGCCCTTCCCAGAAGCGCCGTATCCTTATTGCCGTACGCTATCACTTTGC
TGCCTCTCCGCATAGGCACGCTGGTGGCACGCGCGATCATCCATGTCTTA
CCCACCTCGGAGGCCAGGGCCAACGTCCACCTCAAATGGCCCAATGACGT
GCTACTCAGTGACGAAAAGGTGAGCGGCTTGCTTGTAGAAATGGACAGCT
CATCAGCCTACTACCTGGTGGGTATTGGCGTCAACGTGGTCCAGGCGCCG
CCAGTGCCTGCCGCCGGCGCCGATCGGGGGCGCACCGCCACCTGCCTGGC
CGACCATGGCTTACCAGTCTCGGACGCGGATACTGCCAAGGACTTGTCGA
TTAGCATTGCCCGGGCCGTGACGGAGTGGATAGGCCAGGCGGCGACAGAA
GACACGGCGGAGCTCGTGGTAGCTGATTGGGAGGGGTTGGCTACATGGGG
CAAGGAGTACCGGCGGCGGGACGACGATGTGGTCGTTACTCCACTGGGGC
TGGAAATGGATGGCCGGCTGCGCGTTCGGGACCAGGCCACAGGCGCCATT
CACTACTTGGTTGCTGAGTACTTGCATTGA
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Synonyms
Publications