NO14G01630.1, NO14G01630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01630.1
Unique NameNO14G01630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2652
Alignment locationchr14:511519..514678 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:511519..514678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01630.1 vs.
Match: EWM24646.1 (snare component [Nannochloropsis gaditana])

HSP 1 Score: 226.9 bits (577), Expect = 6.500e-56
Identity = 118/160 (73.75%), Postives = 132/160 (82.50%), Query Frame = 0 
Query:   71 MGRLLAHGTRTSSSALLQRYREIFNYYTSEFHKTQVALQRKRESAELLKSGAG---RGVTKKFGEWGNPQMDQLLRERNAIHSSLRSVGSILSQAIETKDGLRAQRQGLSGANTGLAGLATNLPSISRVVDAIHRKKTRDNAIIGLIIASCLCFTIWYLV 228
            MG++LAHG R SSSA+LQRYREI +YY ++F K+Q  LQRKRE+AELL + AG      TK   +WGNPQMDQLLRERNAIHSSLR V SILSQA+ETKDGLRAQR  L+GAN+GLAGLA NLPSISRVVDAI R KTRDN IIGL+ A CLCFTIWYLV
Sbjct:    1 MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
The following BLAST results are available for this feature:
BLAST of NO14G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24646.16.500e-5673.75snare component [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01630NO14G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01630.1NO14G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01630.1.cds1NO14G01630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01630.1.cds2NO14G01630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01630.1.cds3NO14G01630.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01630.1.cds4NO14G01630.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01630.1 ID=NO14G01630.1|Name=NO14G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2652bp
TTGAAGTTTTTCTATTTTACGATTGTCTTCGTTTCCTTTTTCTGCGGATT
TGGTGGGGGGGGGTTTCCTCTCTTCTCTACCCGTCCGCCAGCCCACCCAT
CCCCCCGACAATCATTCAATGCAAGTACTCAGCAACCAAGTAGTGAATGG
CGCCTGTGGCCTGGTCCCGAACGCGCAGCCGGCCATCCATTTCCAGCCCC
AGTGGAGTAACGACCACATCGTCGTCCCGCCGCCGGTACTCCTTGCCCCA
TGTAGCCAACCCCTCCCAATCAGCTACCACGAGCTCCGCCGTGTCTTCTG
TCGCCGCCTGGCCTATCCACTCCGTCACGGCCCGGGCAATGCTAATCGAC
AAGTCCTTGGCAGTATCCGCGTCCGAGACTGGTAAGCCATGGTCGGCCAG
GCAGGTGGCGGTGCGCCCCCGATCGGCGCCGGCGGCAGGCACTGGCGGCG
CCTGGACCACGTTGACGCCAATACCCACCAGGTAGTAGGCTGATGAGCTG
TCCATTTCTACAAGCAAGCCGCTCACCTTTTCGTCACTGAGTAGCACGTC
ATTGGGCCATTTGAGGTGGACGTTGGCCCTGGCCTCCGAGGTGGGTAAGA
CATGGATGATCGCGCGTGCCACCAGCGTGCCTATGCGGAGAGGCAGCAAA
GTGATAGCGTACGGCAATAAGGATACGGCGCTTCTGGGAAGGGCCAAAGT
CAGAAAAGCGTTGCCCACTATCCCGACCCAAGCACGGCCACTTGTACCCC
TGCCCTTGGTCTGCATCCCGGCCCCCAAGGCTAGCACGTCCACGCCAGCC
CTCGACAAGGCCTCCCCCGTGCTGCTCACCAGCAACGCTTTCATGGCGTC
CTGCGTCGAATTAACCTCCGGTGACCACACAAAATGCAGACGCTTCCCGT
TGCTGGTCTCGATGTCCACGCCAGTACTGCTGCTGCTGAGGCTTGTGCTC
CTGGTTGGCGAGCTGAGGGTGGAAGTGGAGGATGCCATCACAGTCGTCGC
TGTGAGAAGGACAGTTCGGAGCAGCGATGAGGCAGGAGAGGCCCTTGCTC
GGGCAATGAAACAAGCAGGAGAGGCAAACGTGGTGCCTTGACTAGCTGCC
GCGCAGACGGCAGTCACGCTGCAGCAAGCCCAGGTCAAAGCCAAAAGAAG
AAAGCAAGAGGGCGGCGGCGGTATTTGTCCTTGCCGCCAGATCATGAGAG
CATCAGGCCACCCAACTGACAGACTAGTGATGAAGCAACAAGGAGATTCC
TGTGTGTTTTTGTGTGGTGGTTTGCTGTGCAGGCGGTGATGGCAAAGTGG
GATTGGAGAGATTGGAAAGATCCCAATTGTGATTGGGACTTGCGGGCCTC
AACCCCCCACTCTTAGGCGCGATCAGGACGTGAAATTATATGCAACATTT
TTTTAAAGGGGTTTTAGGCGTATGAAAACAAAGCTGGAAAGGGGGAAAGG
GAAAAACATGTTTTTGCTCCTCTTTTTGGGGGTACTGGCGCTCGCGGAGA
TGGCGAACTTCGCAGCCTGAACGCGCGTCATCACAACACCCAAGGCAACT
ATTATTCATCATCATGCACTCCTGTACGTCTCGGGTGACCATTGGAACCA
CAAGGGCTCAAAATCTCGTAACTTCATCAAACACAAAATACACAGCTACG
GAAGGAGAGTGAGGAGAGGCAGGCTTGGGAAAGGTGCGGGTTGTTGTCGG
CGCGCGCGTCCACCAGACACCTTCCCCCCACTCTCCCGTCGAAGCCTAAG
CATCACCATTCGGGCACGCGGTAGCGGCAGTGCGGGCGGCGTTGGTGGTG
GCACCACCGGGGGCAGCAGCATTAGCAACGGCGGCTCTAGCCCTCACGCG
CTCTTTTCAACATTTTCCACTACGGCCGCCGCCGCGGCAACTTTCCCAAA
CCCAATGGGGGATTGGGAGGAGCTCAAACGCAAAGTGCGCGGCATAGAGA
GCAAGCTCGAGGAAAAATGCCAGGCACACGCCTTTCTAGCGCAGCCCATG
AATTCGGACTTGCTTTATGATGAAGAGAATCCACTGCTGGAGAGCTCAGA
AGAGCAATGTCTGGCCACTGAGATTGAGAATCTTCTGGCGGCGCTTTCGG
AATGCAACGACGCCATGGGTCGATTGCTCGCGCATGGGACGCGTACCTCG
AGCTCGGCCTTGTTGCAGCGATACAGGGAAATTTTCAACTACTACACGAG
TGAGTTCCACAAGACACAGGTAGCCCTTCAGAGGAAGCGCGAGAGCGCTG
AGCTCCTCAAGAGTGGAGCCGGTCGGGGGGTTACCAAGAAATTCGGAGAA
TGGGGCAACCCTCAGATGGATCAATTACTGCGGGAGCGCAATGCCATTCA
CAGCTCTCTCCGCAGTGTCGGTAGCATCCTGAGCCAGGCCATAGAGACGA
AGGATGGGTTGCGGGCGCAACGCCAGGGGTTGTCCGGGGCCAATACGGGT
CTCGCAGGGCTTGCCACCAACTTGCCCTCGATCAGTCGTGTGGTGGACGC
CATCCACCGGAAAAAGACGCGAGACAATGCCATCATCGGCCTCATTATTG
CTAGCTGTCTTTGCTTTACGATATGGTACCTTGTCTGATTCGAAACATAC
ATGTGCACTGTCGCTCAAAAGAAGACAAGGAAAATCGAAATAGGCATGAA
GT
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protein sequence of NO14G01630.1

>NO14G01630.1-protein ID=NO14G01630.1-protein|Name=NO14G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MGDWEELKRKVRGIESKLEEKCQAHAFLAQPMNSDLLYDEENPLLESSEE
QCLATEIENLLAALSECNDAMGRLLAHGTRTSSSALLQRYREIFNYYTSE
FHKTQVALQRKRESAELLKSGAGRGVTKKFGEWGNPQMDQLLRERNAIHS
SLRSVGSILSQAIETKDGLRAQRQGLSGANTGLAGLATNLPSISRVVDAI
HRKKTRDNAIIGLIIASCLCFTIWYLV*
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mRNA from alignment at chr14:511519..514678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01630.1 ID=NO14G01630.1|Name=NO14G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=3160bp|location=Sequence derived from alignment at chr14:511519..514678- (Nannochloropsis oceanica)
TTGAAGTTTTTCTATTTTACGATTGTCTTCGTTTCCTTTTTCTGCGGATT
TGGTGGGGGGGGGTTTCCTCTCTTCTCTACCCGTCCGCCAGCCCACCCAT
CCCCCCGACAATCATTCAATGCAAGTACTCAGCAACCAAGTAGTGAATGG
CGCCTGTGGCCTGGTCCCGAACGCGCAGCCGGCCATCCATTTCCAGCCCC
AGTGGAGTAACGACCACATCGTCGTCCCGCCGCCGGTACTCCTTGCCCCA
TGTAGCCAACCCCTCCCAATCAGCTACCACGAGCTCCGCCGTGTCTTCTG
TCGCCGCCTGGCCTATCCACTCCGTCACGGCCCGGGCAATGCTAATCGAC
AAGTCCTTGGCAGTATCCGCGTCCGAGACTGGTAAGCCATGGTCGGCCAG
GCAGGTGGCGGTGCGCCCCCGATCGGCGCCGGCGGCAGGCACTGGCGGCG
CCTGGACCACGTTGACGCCAATACCCACCAGGTAGTAGGCTGATGAGCTG
TCCATTTCTACAAGCAAGCCGCTCACCTTTTCGTCACTGAGTAGCACGTC
ATTGGGCCATTTGAGGTGGACGTTGGCCCTGGCCTCCGAGGTGGGTAAGA
CATGGATGATCGCGCGTGCCACCAGCGTGCCTATGCGGAGAGGCAGCAAA
GTGATAGCGTACGGCAATAAGGATACGGCGCTTCTGGGAAGGGCCAAAGT
CAGAAAAGCGTTGCCCACTATCCCGACCCAAGCACGGCCACTTGTACCCC
TGCCCTTGGTCTGCATCCCGGCCCCCAAGGCTAGCACGTCCACGCCAGCC
CTCGACAAGGCCTCCCCCGTGCTGCTCACCAGCAACGCTTTCATGGCGTC
CTGCGTCGAATTAACCTCCGGTGACCACACAAAATGCAGACGCTTCCCGT
TGCTGGTCTCGATGTCCACGCCAGTACTGCTGCTGCTGAGGCTTGTGCTC
CTGGTTGGCGAGCTGAGGGTGGAAGTGGAGGATGCCATCACAGTCGTCGC
TGTGAGAAGGACAGTTCGGAGCAGCGATGAGGCAGGAGAGGCCCTTGCTC
GGGCAATGAAACAAGCAGGAGAGGCAAACGTGGTGCCTTGACTAGCTGCC
GCGCAGACGGCAGTCACGCTGCAGCAAGCCCAGGTCAAAGCCAAAAGAAG
AAAGCAAGAGGGCGGCGGCGGTATTTGTCCTTGCCGCCAGATCATGAGAG
CATCAGGCCACCCAACTGACAGACTAGTGATGAAGCAACAAGGAGATTCC
TGTGTGTTTTTGTGTGGTGGTTTGCTGTGCAGGCGGTGATGGCAAAGTGG
GATTGGAGAGATTGGAAAGATCCCAATTGTGATTGGGACTTGCGGGCCTC
AACCCCCCACTCTTAGGCGCGATCAGGACGTGAAATTATATGCAACATTT
TTTTAAAGGGGTTTTAGGCGTATGAAAACAAAGCTGGAAAGGGGGAAAGG
GAAAAACATGTTTTTGCTCCTCTTTTTGGGGGTACTGGCGCTCGCGGAGA
TGGCGAACTTCGCAGCCTGAACGCGCGTCATCACAACACCCAAGGCAACT
ATTATTCATCATCATGCACTCCTGTACGTCTCGGGTGACCATTGGAACCA
CAAGGGCTCAAAATCTCGTAACTTCATCAAACACAAAATACACAGCTACG
GAAGGAGAGTGAGGAGAGGCAGGCTTGGGAAAGGTGCGGGTTGTTGTCGG
CGCGCGCGTCCACCAGACACCTTCCCCCCACTCTCCCGTCGAAGCCTAAG
CATCACCATTCGGGCACGCGGTAGCGGCAGTGCGGGCGGCGTTGGTGGTG
GCACCACCGGGGGCAGCAGCATTAGCAACGGCGGCTCTAGCCCTCACGCG
CTCTTTTCAACATTTTCCACTACGGCCGCCGCCGCGGCAACTTTCCCAAA
CCCAATGGGGGATTGGGAGGAGCTCAAACGCAAAGTGCGCGGCATAGAGA
GCAAGCTCGAGGTACGTGGCGAGTGTGCGGGGACATAAATACGGAAAGAC
CACCCGCATCATGAGTGGGTGAAAATGGATGGGGCCGTGCAGGCCTAGTT
TGACTATCCTTCAGGAGCGGCTGTGCAGTTGTGGATTGAGAGAGAAAGCA
TGGCCAAGATGGGATCGTATGCAACGAGCTCGCTTACTTCCACGATGACA
CAATGACACGCTACCTTGTCGCTAATATACTCGTGGTAATCCTTCCGTCT
TCGACCATTGCAGGAAAAATGCCAGGCACACGCCTTTCTAGCGCAGCCCA
TGAATTCGGACTTGCTTTATGATGAAGGTGAGTCAAGAGGAGTGGCAAGT
TTATGCATAGAAATATGAGGAAACACGCTAGTCTACATGGTGTATGGCGC
AGATCCCCTCGTCACAAGCTCAGATCCCTCTTCACCTTTTCGCGCAGAGA
ATCCACTGCTGGAGAGCTCAGAAGAGCAATGTCTGGCCACTGAGATTGAG
AATCTTCTGGCGGCGGTAAGTCCGACGATTGGTGTTGTTTAGCCAGGATA
TGGGGAAGTGTTCCAAGCGTTTGCGACTGGGGGGCTCTTAAACACCCGTT
TTGGTACCATGCCCTCAACGTTCACCGCTACCCCCCTCCTTCCGAACACA
GCTTTCGGAATGCAACGACGCCATGGGTCGATTGCTCGCGCATGGGACGC
GTACCTCGAGCTCGGCCTTGTTGCAGCGATACAGGGAAATTTTCAACTAC
TACACGAGTGAGTTCCACAAGACACAGGTAGCCCTTCAGAGGAAGCGCGA
GAGCGCTGAGCTCCTCAAGAGTGGAGCCGGTCGGGGGGTTACCAAGAAAT
TCGGAGAATGGGGCAACCCTCAGATGGATCAATTACTGCGGGAGCGCAAT
GCCATTCACAGCTCTCTCCGCAGTGTCGGTAGCATCCTGAGCCAGGCCAT
AGAGACGAAGGATGGGTTGCGGGCGCAACGCCAGGGGTTGTCCGGGGCCA
ATACGGGTCTCGCAGGGCTTGCCACCAACTTGCCCTCGATCAGTCGTGTG
GTGGACGCCATCCACCGGAAAAAGACGCGAGACAATGCCATCATCGGCCT
CATTATTGCTAGCTGTCTTTGCTTTACGATATGGTACCTTGTCTGATTCG
AAACATACATGTGCACTGTCGCTCAAAAGAAGACAAGGAAAATCGAAATA
GGCATGAAGT
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Coding sequence (CDS) from alignment at chr14:511519..514678-

>NO14G01630.1 ID=NO14G01630.1|Name=NO14G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr14:511519..514678- (Nannochloropsis oceanica)
ATGGGGGATTGGGAGGAGCTCAAACGCAAAGTGCGCGGCATAGAGAGCAA
GCTCGAGGAAAAATGCCAGGCACACGCCTTTCTAGCGCAGCCCATGAATT
CGGACTTGCTTTATGATGAAGAGAATCCACTGCTGGAGAGCTCAGAAGAG
CAATGTCTGGCCACTGAGATTGAGAATCTTCTGGCGGCGCTTTCGGAATG
CAACGACGCCATGGGTCGATTGCTCGCGCATGGGACGCGTACCTCGAGCT
CGGCCTTGTTGCAGCGATACAGGGAAATTTTCAACTACTACACGAGTGAG
TTCCACAAGACACAGGTAGCCCTTCAGAGGAAGCGCGAGAGCGCTGAGCT
CCTCAAGAGTGGAGCCGGTCGGGGGGTTACCAAGAAATTCGGAGAATGGG
GCAACCCTCAGATGGATCAATTACTGCGGGAGCGCAATGCCATTCACAGC
TCTCTCCGCAGTGTCGGTAGCATCCTGAGCCAGGCCATAGAGACGAAGGA
TGGGTTGCGGGCGCAACGCCAGGGGTTGTCCGGGGCCAATACGGGTCTCG
CAGGGCTTGCCACCAACTTGCCCTCGATCAGTCGTGTGGTGGACGCCATC
CACCGGAAAAAGACGCGAGACAATGCCATCATCGGCCTCATTATTGCTAG
CTGTCTTTGCTTTACGATATGGTACCTTGTCTGA
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Synonyms
Publications