NO14G01610.1, NO14G01610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01610.1
Unique NameNO14G01610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1438
Alignment locationchr14:508683..510231 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:508683..510231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01610.1 vs.
Match: EWM24648.1 (protein kinase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 292.7 bits (748), Expect = 1.100e-75
Identity = 143/211 (67.77%), Postives = 172/211 (81.52%), Query Frame = 0 
Query:   20 RHAM-QYYGRASYWDYRYTNDPEPFDWYQKYSALKEFLGLYIRKNDAVLVAGAGNSSLSEEMYQEGITNITNVDISRVVVDQMQERHRGVTSMVWQEMDMCALDFGDASFNVVLDKGTMDSILCGKGSITNVTSMCMEVSRVLKSEGIFIIVSYGIPSNRLQYLQEERYKWRVSVHSVPKPSVT-VSSSSSSTTSDAADPTDAGSVHYIYI 229
            +H M Q YGRASYWD RYT DPEPFDWYQ+YS LK  L  +IRK+D++L+AG GNSS+SE+MY++G T+ITN+DISRVVV+QM+E HRG TSMVWQ M+ CAL+  DASFNVVLDKGT+DSILCG GS+ N   MCMEVSRVLK++GIFI++SYGIP NRLQYLQEE Y WRVSVH+VPK  +  + SSS+    D AD +  GSVHY+YI
Sbjct:   10 QHPMSQCYGRASYWDSRYTTDPEPFDWYQRYSGLKGLLKQHIRKSDSILMAGCGNSSMSEDMYEDGFTHITNIDISRVVVNQMRESHRGKTSMVWQHMNACALNLPDASFNVVLDKGTLDSILCGNGSLNNGAMMCMEVSRVLKADGIFIVISYGIPENRLQYLQEEAYSWRVSVHTVPKAQLDGLPSSSNPADGDLADGSYGGSVHYVYI 220
The following BLAST results are available for this feature:
BLAST of NO14G01610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24648.11.100e-7567.77protein kinase domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01610NO14G01610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01610.1NO14G01610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01610.1.cds1NO14G01610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01610.1.cds2NO14G01610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01610.1 ID=NO14G01610.1|Name=NO14G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1438bp
GCGGCGGCAGTAAACAAAACAGCCGCGTGCCACGCACGCCTGCCTCGGCG
CCCTCCTGTCCCTTTGGTGTGGCCACGATACTGTCGTTCACCTCCAGGCT
GACGCGCGGGGGAATCAGCTGTGGGTGTGTGGTGTGTGGCGCGGCGCGCG
GTGAATGGGTGGGTAGGAAGGAGGGAACGGAGGGCCGTTTAGGGAGAGTA
GGTGAACGTCAACACCTCTTTTCTGCGCATTTGATAACTCCATGATACCA
TACATCACAATCAAAGGAGGACGGGACGTCCGCAGATGGGGGGTCAGGCA
TATTCATTTTGTTTCTCCGGGATCCAGCCAATCCCTTTTCTTCTTCGGGA
TCCTGGCAATCCCTCTTAACAATCTCTTTTCGCTCTCATTTTTCTGTGCC
CAGAATTCTCATCGCTGCTCATCATGCCACCCACTGGTCCTTCTGCACTT
ACCACAGGCCCCGCCGCTCCACCACTCACACGTCACGCTATGCAGTACTA
TGGACGAGCCAGTTACTGGGACTATCGCTACACCAATGACCCAGAGCCGT
TTGACTGGTACCAAAAATACAGCGCTCTCAAGGAGTTTTTGGGGCTATAC
ATCAGAAAGAACGACGCTGTCCTAGTGGCCGGTGCAGGAAACTCAAGCCT
GAGCGAGGAAATGTACCAAGAAGGTATTACGAATATTACCAACGTTGATA
TCTCTCGCGTGGTGGTGGACCAGATGCAGGAGCGACACCGAGGAGTGACC
AGCATGGTATGGCAGGAGATGGACATGTGCGCGTTGGACTTTGGGGACGC
CTCTTTCAACGTAGTGCTCGACAAGGGAACTATGGACTCGATCCTTTGTG
GGAAAGGCTCCATCACCAATGTGACCAGCATGTGCATGGAAGTCTCACGC
GTTCTCAAGTCCGAAGGCATCTTTATCATTGTTTCCTACGGCATTCCATC
CAACCGTCTTCAGTACCTCCAAGAGGAGAGATACAAGTGGCGCGTTTCAG
TTCACAGTGTACCCAAGCCATCTGTCACTGTCTCATCTTCCTCCTCGTCC
ACAACCTCTGATGCCGCCGATCCTACAGATGCCGGCAGCGTGCACTACAT
CTACATCTGCCAAAAGGGGCCTGTCACATCCACCCTGACAGAAAAAGGCA
CAGAAACGGGGACAGATTGGTATACACAAGGGAGCGAGGGGGTGCAAATC
GCAGCACGGGAGATCACGACGGAGAATCAGAAAGGGTTGTAAGCCAGCAG
CGACAGTGTGGGGGGAGGAGGAAGAGTGTGTATGTACAGATTACTTGAAG
AGAGAGAAGAGCAAAATGGGATTGGTACTGTTGAAAATGAAGAGATGTGC
ATCAGTCGTGATGAAAGAAAAATACTCTCGTATTACTGAGTCCACAGCGT
CCATTCGTTATCCCGCGGTGGTTCGTGCGGAGATGAAC
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protein sequence of NO14G01610.1

>NO14G01610.1-protein ID=NO14G01610.1-protein|Name=NO14G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MPPTGPSALTTGPAAPPLTRHAMQYYGRASYWDYRYTNDPEPFDWYQKYS
ALKEFLGLYIRKNDAVLVAGAGNSSLSEEMYQEGITNITNVDISRVVVDQ
MQERHRGVTSMVWQEMDMCALDFGDASFNVVLDKGTMDSILCGKGSITNV
TSMCMEVSRVLKSEGIFIIVSYGIPSNRLQYLQEERYKWRVSVHSVPKPS
VTVSSSSSSTTSDAADPTDAGSVHYIYICQKGPVTSTLTEKGTETGTDWY
TQGSEGVQIAAREITTENQKGL*
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mRNA from alignment at chr14:508683..510231-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01610.1 ID=NO14G01610.1|Name=NO14G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1549bp|location=Sequence derived from alignment at chr14:508683..510231- (Nannochloropsis oceanica)
GCGGCGGCAGTAAACAAAACAGCCGCGTGCCACGCACGCCTGCCTCGGCG
CCCTCCTGTCCCTTTGGTGTGGCCACGATACTGTCGTTCACCTCCAGGCT
GACGCGCGGGGGAATCAGCTGTGGGTGTGTGGTGTGTGGCGCGGCGCGCG
GTGAATGGGTGGGTAGGAAGGAGGGAACGGAGGGCCGTTTAGGGAGAGTA
GGTGAACGTCAACACCTCTTTTCTGCGCATTTGATAACTCCATGATACCA
TACATCACAATCAAAGGAGGACGGGACGTCCGCAGATGGGGGGTCAGGCA
TATTCATTTTGTTTCTCCGGGATCCAGCCAATCCCTTTTCTTCTTCGGGA
TCCTGGCAATCCCTCTTAACAATCTCTTTTCGCTCTCATTTTTCTGTGCC
CAGAATTCTCATCGCTGCTCATCATGCCACCCACTGGTCCTTCTGCACTT
ACCACAGGCCCCGCCGCTCCACCACTCACACGTCACGCTATGCAGTACTA
TGGACGAGCCAGTTACTGGGACTATCGCTACACCAAGTAAGTCCGTTCTC
AAGCTTTCACCCTTTACAACGCAACCCACAATAAGCATGCCAATCAACCC
CTTCACGTTCCCGTTCCGCACCGCCCCGATACCTCGCAACAATACAGTGA
CCCAGAGCCGTTTGACTGGTACCAAAAATACAGCGCTCTCAAGGAGTTTT
TGGGGCTATACATCAGAAAGAACGACGCTGTCCTAGTGGCCGGTGCAGGA
AACTCAAGCCTGAGCGAGGAAATGTACCAAGAAGGTATTACGAATATTAC
CAACGTTGATATCTCTCGCGTGGTGGTGGACCAGATGCAGGAGCGACACC
GAGGAGTGACCAGCATGGTATGGCAGGAGATGGACATGTGCGCGTTGGAC
TTTGGGGACGCCTCTTTCAACGTAGTGCTCGACAAGGGAACTATGGACTC
GATCCTTTGTGGGAAAGGCTCCATCACCAATGTGACCAGCATGTGCATGG
AAGTCTCACGCGTTCTCAAGTCCGAAGGCATCTTTATCATTGTTTCCTAC
GGCATTCCATCCAACCGTCTTCAGTACCTCCAAGAGGAGAGATACAAGTG
GCGCGTTTCAGTTCACAGTGTACCCAAGCCATCTGTCACTGTCTCATCTT
CCTCCTCGTCCACAACCTCTGATGCCGCCGATCCTACAGATGCCGGCAGC
GTGCACTACATCTACATCTGCCAAAAGGGGCCTGTCACATCCACCCTGAC
AGAAAAAGGCACAGAAACGGGGACAGATTGGTATACACAAGGGAGCGAGG
GGGTGCAAATCGCAGCACGGGAGATCACGACGGAGAATCAGAAAGGGTTG
TAAGCCAGCAGCGACAGTGTGGGGGGAGGAGGAAGAGTGTGTATGTACAG
ATTACTTGAAGAGAGAGAAGAGCAAAATGGGATTGGTACTGTTGAAAATG
AAGAGATGTGCATCAGTCGTGATGAAAGAAAAATACTCTCGTATTACTGA
GTCCACAGCGTCCATTCGTTATCCCGCGGTGGTTCGTGCGGAGATGAAC
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Coding sequence (CDS) from alignment at chr14:508683..510231-

>NO14G01610.1 ID=NO14G01610.1|Name=NO14G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr14:508683..510231- (Nannochloropsis oceanica)
ATGCCACCCACTGGTCCTTCTGCACTTACCACAGGCCCCGCCGCTCCACC
ACTCACACGTCACGCTATGCAGTACTATGGACGAGCCAGTTACTGGGACT
ATCGCTACACCAATGACCCAGAGCCGTTTGACTGGTACCAAAAATACAGC
GCTCTCAAGGAGTTTTTGGGGCTATACATCAGAAAGAACGACGCTGTCCT
AGTGGCCGGTGCAGGAAACTCAAGCCTGAGCGAGGAAATGTACCAAGAAG
GTATTACGAATATTACCAACGTTGATATCTCTCGCGTGGTGGTGGACCAG
ATGCAGGAGCGACACCGAGGAGTGACCAGCATGGTATGGCAGGAGATGGA
CATGTGCGCGTTGGACTTTGGGGACGCCTCTTTCAACGTAGTGCTCGACA
AGGGAACTATGGACTCGATCCTTTGTGGGAAAGGCTCCATCACCAATGTG
ACCAGCATGTGCATGGAAGTCTCACGCGTTCTCAAGTCCGAAGGCATCTT
TATCATTGTTTCCTACGGCATTCCATCCAACCGTCTTCAGTACCTCCAAG
AGGAGAGATACAAGTGGCGCGTTTCAGTTCACAGTGTACCCAAGCCATCT
GTCACTGTCTCATCTTCCTCCTCGTCCACAACCTCTGATGCCGCCGATCC
TACAGATGCCGGCAGCGTGCACTACATCTACATCTGCCAAAAGGGGCCTG
TCACATCCACCCTGACAGAAAAAGGCACAGAAACGGGGACAGATTGGTAT
ACACAAGGGAGCGAGGGGGTGCAAATCGCAGCACGGGAGATCACGACGGA
GAATCAGAAAGGGTTGTAA
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Synonyms
Publications