NO14G01600.3, NO14G01600.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G01600.3
Unique Name	NO14G01600.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3217
Alignment location	chr14:503725..507090 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:503725..507090 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO14G01600.3 vs.
Match: EWM24667.1 (Protein of unknown function DUF3172 [Nannochloropsis gaditana])

HSP 1 Score: 186.4 bits (472), Expect = 1.200e-43
Identity = 102/132 (77.27%), Postives = 113/132 (85.61%), Query Frame = 0

Query:   70 RLGRRLGIPLYSMLDKEGNKRRRRRRQGN--GNESNEK--EEEEEYRAMRPAALDRVRPPPPPRIRPEVGKNRLPFGVSWIPQGLSAALLMGTFVLGVGTGVTVDSAINTNPKDLASRDAIDKNAPNPKFCQ 198
            R GRR  I + SM DKEGN+RRR R + N  G +++E+  +EEEEYRAMRP ALDRVRPPP  R RPEVGKNRLPFG+SWIPQGLSAALL+GTFVLGVGTGVTVDSA+NTN KDLASRDAIDKNAPNPKFCQ
Sbjct:   35 RSGRRAKISMQSMYDKEGNRRRRVRSRVNRKGEDADEEGDDEEEEYRAMRPPALDRVRPPPFSRGRPEVGKNRLPFGISWIPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQ 166

The following BLAST results are available for this feature:

BLAST of NO14G01600.3 vs.

BLAST of NO14G01600.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24667.1	1.200e-43	77.27	Protein of unknown function DUF3172 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G01600	NO14G01600	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G01600.3	NO14G01600.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G01600.3.cds1	NO14G01600.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G01600.3.cds2	NO14G01600.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:503725..507090+
coding sequence from alignment at chr14:503725..507090+

mRNA sequence

>NO14G01600.3 ID=NO14G01600.3|Name=NO14G01600.3|organism=Nannochloropsis oceanica|type=mRNA|length=3217bp
ACGACTATTATATTTTTTGCTTCTTTTGGGGTTTTCCTTTTTTCTGACTG
GGGGATATACAAATTAACAAGCGTACATGAAAGTGGCGACGTATTCGCAT
ATACATTCACATGCTTCTCTTCCTCCTTCGTATTCATTCTTTTGCTTTGT
AAATGCTGCTCACCTTGGCGCTCGATGACCTGGCTTGGGTGAGGCGGCTC
TCTTGGCCACACTCGCTTTTTTGGGCTTGACAACACCCCCATTCGTGGCC
TTTCCCCCACCGGCCTCGTCTGTCCTTTCCTGTGCTGCATGACGACGAGT
GGCGCTGGCCGGCGTGTCCTTGCCACCCCGTACGGTTGTCATCAGCGTCT
CCACTGCCCCTGTTCCTGTCATGCATTCATCAAGCTCGACCCCGTTAAGC
AGCTTGCTGGGTGGGATCCCTGACCCTAGCGCGGGAGAAGGTGTCCTCTC
GGCAACATCCCTTTGTCGGACAGCAGCAGTGGCGGCCCGGACAAGGGTGT
AGGTCCCAAGGCCTACAACTACCATGGCTAGAAGTTTGCAGGTAACAGAA
AGATCGCCTTGCTTGCCAAAGGGCCACGCCAAGCCCCAAAGATCCCGCCG
CCCGCGCCCTCCGCTTGGCAAGGTGCCGCTGAGAGGCCGGGTGTCAGGGG
AAGCGTCCGTAGGCAAGGGCGCGAACGTAATGGGCTCGAGGCGCCCAAAG
AAGGCGCGGAGGTTGAGACCAGGCCCTGGGTGACAACGCATGTCGATGGC
TTCCACCAGGTGGCTGCGAATTCCGCCATCCACCATCGCCCGGCGAGGAG
GGTCTTGTTCAAACATGAAGAAGAAGGTGGGGATCAAGCTGCCCTCCGCC
CTCAATGAAGAACCCGAATCCATGGCAAGCATTAAGTTGTTCAGGTGCAT
GAGATTGCCGCACTCCACCTTCTCCATGTGCTTCACAATCACCACCAACT
CCCCGTCTACGCCCACCGCCTGGGACGCCTGGACCAAAGCATCACGCACA
CCGCCCGTCGATGTCACCCAGTCACCTGGCTTTGCGAGTTGAGCCGCGTT
CCATTGCATGCAGCCCCGACCGTCTGCCAGCACTTCAAGGACCGCTCTTG
CCGCAGTCCGGGCCTGCGCCCCGATGAGAGCTAGCTTGGTTACTTTGTCT
CCAGAGTATAACCCGTCGCTCAGCGCATTGACCAGCTGTTGAATGGCCCG
AGCTTGGCTCACAACCACCAGGCTCTCGGCTGTGTATTCAGTGGTGTATA
GAGACATGACGGCATGGTGTTGGGAGAGGCGTGGAGTAGAAAAGACAACA
TATTGTAGGTGTGAGCATGACCGGGCTGGTATGAGAGGTACATGTATATG
AATGGGAAACTTGGAAAGGAGAGGTTAAGAAACTCCACACTTACTCAAGC
GGTCCTTCATCGTCGCTTCATCCCGAGAGGCCGGCACAATCTGCAGCAAC
ACCATCAGCAGGACATATCCCAGGAGCTGGCGCGGCACGCTCCAAATATG
GCGGTGGGCAGCCATCATGACGACACGTCCGGGTTGAGACGTGTTTGGAG
TGGGCGATCACGGGGACAAAAGCGCAACGCAGCCTTTCGAAAGCTTTTCT
GTGCAGTTGTGGGAAGAAGACAAGGGGTTATGGCATGTGATGTTTAGTTG
TGGTTGCTGGCTGCCTAAACCAGCCTCGAGTGCCAAGGTCCTGGGCCCAC
GGACTTCTCGGACTACTGCATAGCTTCGTAACTTGGGCGAGAGCTTCCGC
GAAGGCCACCGCTCTGCCGCACTGGCTCACTATGCCTAATAAAGACCTTT
TATCCCTAATCATACCCAACAGGACAGGAAGACCCCACGAAGGACTCACC
GGCTGTGCTGGAAAGCTGCAGTCTCCAGCAAGCGCGTAACTAGCCAAGCT
TACTCAAGGTCTTGCTTCGCTCATTCATGGAGCCTCAGCCCACTATCTCT
CGGTCCACGCGTCGCAAGACAATTGCCCCTCTTCCCTGTGGGCTGGCTCT
GCTCTTCATCGTTTGTGGCTGTTGCTTGCCCCTTAGTCAGGCCTTCCTTC
CCCCACATTTCAGCCAGGCGGGCAGCCGGACTCTATCCTTGCTTGGTCTC
CGCCAACCCTCCTCATCACGCTCGTCGTCACTACGACTGGGGAGGAGGCT
AGGTATTCCCCTGTACAGCATGTTGGACAAGGAGGGGAACAAACGCCGTC
GTCGACGACGCCAAGGCAACGGGAATGAGAGCAATGAAAAGGAAGAGGAA
GAGGAGTATCGAGCCATGAGACCAGCAGCCCTGGACCGGGTACGCCCTCC
ACCCCCGCCCCGGATCCGCCCAGAGGTGGGCAAGAACCGGCTACCATTTG
GCGTCTCATGGATCCCCCAGGGCCTAAGTGCGGCCCTACTCATGGGCACA
TTTGTTTTGGGTGTGGGTACGGGTGTGACAGTGGACTCGGCCATCAACAC
CAACCCCAAGGACCTGGCATCTCGCGATGCCATAGATAAGAACGCCCCTA
ATCCCAAATTCTGCCAGGTGAGTTGCGCGTTGCTCGTCAGTCTTGAACCA
CCCTCTCGCCTGTCTTGTTCACTTGTCGCCCCATTCATCTCCTCGGGTCA
TACCCTCCTTACCTCCTTCACCCAGCGCTACGGTGCCAGCACATTAGTGC
TGGACAACCGCATCTTCGTCTCCTTCAACCCTTTCGACGTTTACGTAACG
CAGGCTGACGTCAAGCCCGGCTGCGTATTGCGTGCCGCAAATGTGGTACA
GGCCCTGCAAGGCCGGGGGCTCCTCACGGACGAAGAGGTGAGGGCTTAAA
GAGAAGAAAAAGAAAAGAGGAAGCGAAGTGGGAGAAGCTGGGAGACGTAA
GGGGAGTGCGGCTGCTTAGGGTCTACAAAGCAGTAAATCTCACCGAGTTT
TCCTCCTCCTTTTTGCTTCACAGGTGAATGTCTGTAAGAACGGCAATAAT
ACCTGGGCGTACGTTGGTGACATCAATGACAAGCCCCAGCTCTCCTGTGT
GTACCAATCCGACGACGCACAGAATGAGTTTTTGGAGAACCCCAAGCTGG
GCGTAGGAGAAGATGTGTACGACAAATAGACAATGAAAGTGGAAAAAAAA
TTAAATCCTTGCTGTAAATACTGGTGAAGAAAGACTCATGAAGGGTTAGA
AGCGTGCGTGATCCCCGCTCAGTAAAAATGTTGAAAAACGAAGAAGTAAC
AGTAACATTGCGAAAAG

protein sequence of NO14G01600.3

>NO14G01600.3-protein ID=NO14G01600.3-protein|Name=NO14G01600.3|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MEPQPTISRSTRRKTIAPLPCGLALLFIVCGCCLPLSQAFLPPHFSQAGS
RTLSLLGLRQPSSSRSSSLRLGRRLGIPLYSMLDKEGNKRRRRRRQGNGN
ESNEKEEEEEYRAMRPAALDRVRPPPPPRIRPEVGKNRLPFGVSWIPQGL
SAALLMGTFVLGVGTGVTVDSAINTNPKDLASRDAIDKNAPNPKFCQVSC
ALLVSLEPPSRLSCSLVAPFISSGHTLLTSFTQRYGASTLVLDNRIFVSF
NPFDVYVTQADVKPGCVLRAANVVQALQGRGLLTDEEVRA*

mRNA from alignment at chr14:503725..507090+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G01600.3 ID=NO14G01600.3|Name=NO14G01600.3|organism=Nannochloropsis oceanica|type=mRNA|length=3366bp|location=Sequence derived from alignment at chr14:503725..507090+ (Nannochloropsis oceanica)
ACGACTATTATATTTTTTGCTTCTTTTGGGGTTTTCCTTTTTTCTGACTG
GGGGATATACAAATTAACAAGCGTACATGAAAGTGGCGACGTATTCGCAT
ATACATTCACATGCTTCTCTTCCTCCTTCGTATTCATTCTTTTGCTTTGT
AAATGCTGCTCACCTTGGCGCTCGATGACCTGGCTTGGGTGAGGCGGCTC
TCTTGGCCACACTCGCTTTTTTGGGCTTGACAACACCCCCATTCGTGGCC
TTTCCCCCACCGGCCTCGTCTGTCCTTTCCTGTGCTGCATGACGACGAGT
GGCGCTGGCCGGCGTGTCCTTGCCACCCCGTACGGTTGTCATCAGCGTCT
CCACTGCCCCTGTTCCTGTCATGCATTCATCAAGCTCGACCCCGTTAAGC
AGCTTGCTGGGTGGGATCCCTGACCCTAGCGCGGGAGAAGGTGTCCTCTC
GGCAACATCCCTTTGTCGGACAGCAGCAGTGGCGGCCCGGACAAGGGTGT
AGGTCCCAAGGCCTACAACTACCATGGCTAGAAGTTTGCAGGTAACAGAA
AGATCGCCTTGCTTGCCAAAGGGCCACGCCAAGCCCCAAAGATCCCGCCG
CCCGCGCCCTCCGCTTGGCAAGGTGCCGCTGAGAGGCCGGGTGTCAGGGG
AAGCGTCCGTAGGCAAGGGCGCGAACGTAATGGGCTCGAGGCGCCCAAAG
AAGGCGCGGAGGTTGAGACCAGGCCCTGGGTGACAACGCATGTCGATGGC
TTCCACCAGGTGGCTGCGAATTCCGCCATCCACCATCGCCCGGCGAGGAG
GGTCTTGTTCAAACATGAAGAAGAAGGTGGGGATCAAGCTGCCCTCCGCC
CTCAATGAAGAACCCGAATCCATGGCAAGCATTAAGTTGTTCAGGTGCAT
GAGATTGCCGCACTCCACCTTCTCCATGTGCTTCACAATCACCACCAACT
CCCCGTCTACGCCCACCGCCTGGGACGCCTGGACCAAAGCATCACGCACA
CCGCCCGTCGATGTCACCCAGTCACCTGGCTTTGCGAGTTGAGCCGCGTT
CCATTGCATGCAGCCCCGACCGTCTGCCAGCACTTCAAGGACCGCTCTTG
CCGCAGTCCGGGCCTGCGCCCCGATGAGAGCTAGCTTGGTTACTTTGTCT
CCAGAGTATAACCCGTCGCTCAGCGCATTGACCAGCTGTTGAATGGCCCG
AGCTTGGCTCACAACCACCAGGCTCTCGGCTGTGTATTCAGTGGTGTATA
GAGACATGACGGCATGGTGTTGGGAGAGGCGTGGAGTAGAAAAGACAACA
TATTGTAGGTGTGAGCATGACCGGGCTGGTATGAGAGGTACATGTATATG
AATGGGAAACTTGGAAAGGAGAGGTTAAGAAACTCCACACTTACTCAAGC
GGTCCTTCATCGTCGCTTCATCCCGAGAGGCCGGCACAATCTGCAGCAAC
ACCATCAGCAGGACATATCCCAGGAGCTGGCGCGGCACGCTCCAAATATG
GCGGTGGGCAGCCATCATGACGACACGTCCGGGTTGAGACGTGTTTGGAG
TGGGCGATCACGGGGACAAAAGCGCAACGCAGCCTTTCGAAAGCTTTTCT
GTGCAGTTGTGGGAAGAAGACAAGGGGTTATGGCATGTGATGTTTAGTTG
TGGTTGCTGGCTGCCTAAACCAGCCTCGAGTGCCAAGGTCCTGGGCCCAC
GGACTTCTCGGACTACTGCATAGCTTCGTAACTTGGGCGAGAGCTTCCGC
GAAGGCCACCGCTCTGCCGCACTGGCTCACTATGCCTAATAAAGACCTTT
TATCCCTAATCATACCCAACAGGACAGGAAGACCCCACGAAGGACTCACC
GGCTGTGCTGGAAAGCTGCAGTCTCCAGCAAGCGCGTAACTAGCCAAGCT
TACTCAAGGTCTTGCTTCGCTCATTCATGGAGCCTCAGCCCACTATCTCT
CGGTCCACGCGTCGCAAGACAATTGCCCCTCTTCCCTGTGGGCTGGCTCT
GCTCTTCATCGTTTGTGGCTGTTGCTTGCCCCTTAGTCAGGCCTTCCTTC
CCCCACATTTCAGCCAGGCGGGCAGCCGGACTCTATCCTTGCTTGGTCTC
CGCCAACCCTCCTCATCACGCTCGTCGTCACTACGACTGGGGAGGAGGCT
AGGTATTCCCCTGTACAGCATGTTGGACAAGGAGGGGAACAAACGCCGTC
GTCGACGACGCCAAGGCAACGGGAATGAGAGCAATGAAAAGGAAGAGGAA
GAGGAGTATCGAGCCATGAGACCAGCAGCCCTGGACCGGGTACGCCCTCC
ACCCCCGCCCCGGATCCGCCCAGGTAATTAATTAAGTGCAAGACTATTTA
GGCGGGAGCGGATGCGCGGGTGTGGCTTGTGGGTACCAAACTGATAGTAA
CACTACAAGAGGGAGGCCGAATTCATGTGCCCAGCATCTCACCGCCACTA
CCACAAAACACACACGCGATAGAGGTGGGCAAGAACCGGCTACCATTTGG
CGTCTCATGGATCCCCCAGGGCCTAAGTGCGGCCCTACTCATGGGCACAT
TTGTTTTGGGTGTGGGTACGGGTGTGACAGTGGACTCGGCCATCAACACC
AACCCCAAGGACCTGGCATCTCGCGATGCCATAGATAAGAACGCCCCTAA
TCCCAAATTCTGCCAGGTGAGTTGCGCGTTGCTCGTCAGTCTTGAACCAC
CCTCTCGCCTGTCTTGTTCACTTGTCGCCCCATTCATCTCCTCGGGTCAT
ACCCTCCTTACCTCCTTCACCCAGCGCTACGGTGCCAGCACATTAGTGCT
GGACAACCGCATCTTCGTCTCCTTCAACCCTTTCGACGTTTACGTAACGC
AGGCTGACGTCAAGCCCGGCTGCGTATTGCGTGCCGCAAATGTGGTACAG
GCCCTGCAAGGCCGGGGGCTCCTCACGGACGAAGAGGTGAGGGCTTAAAG
AGAAGAAAAAGAAAAGAGGAAGCGAAGTGGGAGAAGCTGGGAGACGTAAG
GGGAGTGCGGCTGCTTAGGGTCTACAAAGCAGTAAATCTCACCGAGTTTT
CCTCCTCCTTTTTGCTTCACAGGTGAATGTCTGTAAGAACGGCAATAATA
CCTGGGCGTACGTTGGTGACATCAATGACAAGCCCCAGCTCTCCTGTGTG
TACCAATCCGACGACGCACAGAATGAGTTTTTGGAGAACCCCAAGCTGGG
CGTAGGAGAAGATGTGTACGACAAATAGACAATGAAAGTGGAAAAAAAAT
TAAATCCTTGCTGTAAATACTGGTGAAGAAAGACTCATGAAGGGTTAGAA
GCGTGCGTGATCCCCGCTCAGTAAAAATGTTGAAAAACGAAGAAGTAACA
GTAACATTGCGAAAAG

Coding sequence (CDS) from alignment at chr14:503725..507090+

>NO14G01600.3 ID=NO14G01600.3|Name=NO14G01600.3|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr14:503725..507090+ (Nannochloropsis oceanica)
ATGGAGCCTCAGCCCACTATCTCTCGGTCCACGCGTCGCAAGACAATTGC
CCCTCTTCCCTGTGGGCTGGCTCTGCTCTTCATCGTTTGTGGCTGTTGCT
TGCCCCTTAGTCAGGCCTTCCTTCCCCCACATTTCAGCCAGGCGGGCAGC
CGGACTCTATCCTTGCTTGGTCTCCGCCAACCCTCCTCATCACGCTCGTC
GTCACTACGACTGGGGAGGAGGCTAGGTATTCCCCTGTACAGCATGTTGG
ACAAGGAGGGGAACAAACGCCGTCGTCGACGACGCCAAGGCAACGGGAAT
GAGAGCAATGAAAAGGAAGAGGAAGAGGAGTATCGAGCCATGAGACCAGC
AGCCCTGGACCGGGTACGCCCTCCACCCCCGCCCCGGATCCGCCCAGAGG
TGGGCAAGAACCGGCTACCATTTGGCGTCTCATGGATCCCCCAGGGCCTA
AGTGCGGCCCTACTCATGGGCACATTTGTTTTGGGTGTGGGTACGGGTGT
GACAGTGGACTCGGCCATCAACACCAACCCCAAGGACCTGGCATCTCGCG
ATGCCATAGATAAGAACGCCCCTAATCCCAAATTCTGCCAGGTGAGTTGC
GCGTTGCTCGTCAGTCTTGAACCACCCTCTCGCCTGTCTTGTTCACTTGT
CGCCCCATTCATCTCCTCGGGTCATACCCTCCTTACCTCCTTCACCCAGC
GCTACGGTGCCAGCACATTAGTGCTGGACAACCGCATCTTCGTCTCCTTC
AACCCTTTCGACGTTTACGTAACGCAGGCTGACGTCAAGCCCGGCTGCGT
ATTGCGTGCCGCAAATGTGGTACAGGCCCTGCAAGGCCGGGGGCTCCTCA
CGGACGAAGAGGTGAGGGCTTAA

Synonyms

Publications