NO14G01590.1, NO14G01590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01590.1
Unique NameNO14G01590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr14:503725..505326 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:503725..505326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G01590.1 vs.
Match: EWM24642.1 (hypothetical protein Naga_100055g20 [Nannochloropsis gaditana])

HSP 1 Score: 264.6 bits (675), Expect = 4.900e-67
Identity = 155/332 (46.69%), Postives = 209/332 (62.95%), Query Frame = 0
Query:   14 QLLGYVLLMVLLQIVPASRDEATMKDRLTESLVVVSQARAIQQLVNALSDGLYSGDKVTKLALIGAQARTAARAVLEVLADGRGCMQWNAAQLAKPGDWVTSTGGVRDALVQASQAVGVDGELVVIVKHMEKVECGNLMHLNNLMLAMDSGSSLRAEGSLIPTFFFMFEQDPPRRAMVDGGIRSHLVEAIDMRCHPGPGLNLRAFFGRLEPITFAPLPTDASPDTRPLSGTLPSGGRGRRDLWGLAWPFGKQGDLSVTCKLLAMVVVGLGTYTLVRAATAAVRQRDVAERTPSPALGSGIPPSKLLNGVELDECMTGTGAVETLMTTVRGGK 346
            +L   +LLM++LQ+VPASRDE  ++ RLTE+LVVV+Q+RAIQQL   LS  +    +    ALIG+Q+R+AARAVL VL D RGC+ WN++Q A+P  WVTS   VRDA+ QA++    DGE+V++V+HMEK+ C N+M+LNNLMLAMD  +    +  L  T FF+FE+DPP   ++DGG+RSHL E ID RC PGP LNL+AFFGR  PITF P+P D   DT+PL  T+P   +  +  W  +W       L++T KLL +  +G     +     +A R+R V +       GS       + G E   C      +ETL T+VRGGK
Sbjct:   18 RLASCILLMIMLQMVPASRDERQLRTRLTEALVVVNQSRAIQQLATKLSAEIR---REVSFALIGSQSRSAARAVLGVLTDRRGCLHWNSSQ-AEPDAWVTSRAKVRDAIAQAAEVRRTDGEVVLVVEHMEKLHCDNIMYLNNLMLAMDRSTDSGVD-PLPTTLFFLFEEDPPPGVLMDGGVRSHLAEGIDERCRPGPELNLKAFFGRTVPITFLPVPDDVPRDTQPLCSTIPL--KHDKASWASSWLSDSHWSLNLTGKLLVVAAMG----WVANVCVSAARRRIVGKAVSVTTSGSE------MEGGESKNC---RATLETL-TSVRGGK 328          
The following BLAST results are available for this feature:
BLAST of NO14G01590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24642.14.900e-6746.69hypothetical protein Naga_100055g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01590NO14G01590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01590.1NO14G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01590.1.cds1NO14G01590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01590.1.cds2NO14G01590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01590.1 ID=NO14G01590.1|Name=NO14G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
ACAGAAAAGCTTTCGAAAGGCTGCGTTGCGCTTTTGTCCCCGTGATCGCC
CACTCCAAACACGTCTCAACCCGGACGTGTCGTCATGATGGCTGCCCACC
GCCATATTTGGAGCGTGCCGCGCCAGCTCCTGGGATATGTCCTGCTGATG
GTGTTGCTGCAGATTGTGCCGGCCTCTCGGGATGAAGCGACGATGAAGGA
CCGCTTGACCGAGAGCCTGGTGGTTGTGAGCCAAGCTCGGGCCATTCAAC
AGCTGGTCAATGCGCTGAGCGACGGGTTATACTCTGGAGACAAAGTAACC
AAGCTAGCTCTCATCGGGGCGCAGGCCCGGACTGCGGCAAGAGCGGTCCT
TGAAGTGCTGGCAGACGGTCGGGGCTGCATGCAATGGAACGCGGCTCAAC
TCGCAAAGCCAGGTGACTGGGTGACATCGACGGGCGGTGTGCGTGATGCT
TTGGTCCAGGCGTCCCAGGCGGTGGGCGTAGACGGGGAGTTGGTGGTGAT
TGTGAAGCACATGGAGAAGGTGGAGTGCGGCAATCTCATGCACCTGAACA
ACTTAATGCTTGCCATGGATTCGGGTTCTTCATTGAGGGCGGAGGGCAGC
TTGATCCCCACCTTCTTCTTCATGTTTGAACAAGACCCTCCTCGCCGGGC
GATGGTGGATGGCGGAATTCGCAGCCACCTGGTGGAAGCCATCGACATGC
GTTGTCACCCAGGGCCTGGTCTCAACCTCCGCGCCTTCTTTGGGCGCCTC
GAGCCCATTACGTTCGCGCCCTTGCCTACGGACGCTTCCCCTGACACCCG
GCCTCTCAGCGGCACCTTGCCAAGCGGAGGGCGCGGGCGGCGGGATCTTT
GGGGCTTGGCGTGGCCCTTTGGCAAGCAAGGCGATCTTTCTGTTACCTGC
AAACTTCTAGCCATGGTAGTTGTAGGCCTTGGGACCTACACCCTTGTCCG
GGCCGCCACTGCTGCTGTCCGACAAAGGGATGTTGCCGAGAGGACACCTT
CTCCCGCGCTAGGGTCAGGGATCCCACCCAGCAAGCTGCTTAACGGGGTC
GAGCTTGATGAATGCATGACAGGAACAGGGGCAGTGGAGACGCTGATGAC
AACCGTACGGGGTGGCAAGGACACGCCGGCCAGCGCCACTCGTCGTCATG
CAGCACAGGAAAGGACAGACGAGGCCGGTGGGGGAAAGGCCACGAATGGG
GGTGTTGTCAAGCCCAAAAAAGCGAGTGTGGCCAAGAGAGCCGCCTCACC
CAAGCCAGGTCATCGAGCGCCAAGGTGAGCAGCATTTACAAAGCAAAAGA
ATGAATACGAAGGAGGAAGAGAAGCATGTGAATGTATATGCGAATACGTC
GCCACTTTCATGTACGCTTGTTAATTTGTATATCCCCCAGTCAGAAAAAA
GGAAAACCCCAAAAGAAGCAAAAAATATAATAGTCGT
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protein sequence of NO14G01590.1

>NO14G01590.1-protein ID=NO14G01590.1-protein|Name=NO14G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MMAAHRHIWSVPRQLLGYVLLMVLLQIVPASRDEATMKDRLTESLVVVSQ
ARAIQQLVNALSDGLYSGDKVTKLALIGAQARTAARAVLEVLADGRGCMQ
WNAAQLAKPGDWVTSTGGVRDALVQASQAVGVDGELVVIVKHMEKVECGN
LMHLNNLMLAMDSGSSLRAEGSLIPTFFFMFEQDPPRRAMVDGGIRSHLV
EAIDMRCHPGPGLNLRAFFGRLEPITFAPLPTDASPDTRPLSGTLPSGGR
GRRDLWGLAWPFGKQGDLSVTCKLLAMVVVGLGTYTLVRAATAAVRQRDV
AERTPSPALGSGIPPSKLLNGVELDECMTGTGAVETLMTTVRGGKDTPAS
ATRRHAAQERTDEAGGGKATNGGVVKPKKASVAKRAASPKPGHRAPR*
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mRNA from alignment at chr14:503725..505326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01590.1 ID=NO14G01590.1|Name=NO14G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1602bp|location=Sequence derived from alignment at chr14:503725..505326- (Nannochloropsis oceanica)
ACAGAAAAGCTTTCGAAAGGCTGCGTTGCGCTTTTGTCCCCGTGATCGCC CACTCCAAACACGTCTCAACCCGGACGTGTCGTCATGATGGCTGCCCACC GCCATATTTGGAGCGTGCCGCGCCAGCTCCTGGGATATGTCCTGCTGATG GTGTTGCTGCAGATTGTGCCGGCCTCTCGGGATGAAGCGACGATGAAGGA CCGCTTGAGTAAGTGTGGAGTTTCTTAACCTCTCCTTTCCAAGTTTCCCA TTCATATACATGTACCTCTCATACCAGCCCGGTCATGCTCACACCTACAA TATGTTGTCTTTTCTACTCCACGCCTCTCCCAACACCATGCCGTCATGTC TCTATACACCACTGAATACACAGCCGAGAGCCTGGTGGTTGTGAGCCAAG CTCGGGCCATTCAACAGCTGGTCAATGCGCTGAGCGACGGGTTATACTCT GGAGACAAAGTAACCAAGCTAGCTCTCATCGGGGCGCAGGCCCGGACTGC GGCAAGAGCGGTCCTTGAAGTGCTGGCAGACGGTCGGGGCTGCATGCAAT GGAACGCGGCTCAACTCGCAAAGCCAGGTGACTGGGTGACATCGACGGGC GGTGTGCGTGATGCTTTGGTCCAGGCGTCCCAGGCGGTGGGCGTAGACGG GGAGTTGGTGGTGATTGTGAAGCACATGGAGAAGGTGGAGTGCGGCAATC TCATGCACCTGAACAACTTAATGCTTGCCATGGATTCGGGTTCTTCATTG AGGGCGGAGGGCAGCTTGATCCCCACCTTCTTCTTCATGTTTGAACAAGA CCCTCCTCGCCGGGCGATGGTGGATGGCGGAATTCGCAGCCACCTGGTGG AAGCCATCGACATGCGTTGTCACCCAGGGCCTGGTCTCAACCTCCGCGCC TTCTTTGGGCGCCTCGAGCCCATTACGTTCGCGCCCTTGCCTACGGACGC TTCCCCTGACACCCGGCCTCTCAGCGGCACCTTGCCAAGCGGAGGGCGCG GGCGGCGGGATCTTTGGGGCTTGGCGTGGCCCTTTGGCAAGCAAGGCGAT CTTTCTGTTACCTGCAAACTTCTAGCCATGGTAGTTGTAGGCCTTGGGAC CTACACCCTTGTCCGGGCCGCCACTGCTGCTGTCCGACAAAGGGATGTTG CCGAGAGGACACCTTCTCCCGCGCTAGGGTCAGGGATCCCACCCAGCAAG CTGCTTAACGGGGTCGAGCTTGATGAATGCATGACAGGAACAGGGGCAGT GGAGACGCTGATGACAACCGTACGGGGTGGCAAGGACACGCCGGCCAGCG CCACTCGTCGTCATGCAGCACAGGAAAGGACAGACGAGGCCGGTGGGGGA AAGGCCACGAATGGGGGTGTTGTCAAGCCCAAAAAAGCGAGTGTGGCCAA GAGAGCCGCCTCACCCAAGCCAGGTCATCGAGCGCCAAGGTGAGCAGCAT TTACAAAGCAAAAGAATGAATACGAAGGAGGAAGAGAAGCATGTGAATGT ATATGCGAATACGTCGCCACTTTCATGTACGCTTGTTAATTTGTATATCC CCCAGTCAGAAAAAAGGAAAACCCCAAAAGAAGCAAAAAATATAATAGTC GT
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Coding sequence (CDS) from alignment at chr14:503725..505326-

>NO14G01590.1 ID=NO14G01590.1|Name=NO14G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr14:503725..505326- (Nannochloropsis oceanica)
ATGATGGCTGCCCACCGCCATATTTGGAGCGTGCCGCGCCAGCTCCTGGG
ATATGTCCTGCTGATGGTGTTGCTGCAGATTGTGCCGGCCTCTCGGGATG
AAGCGACGATGAAGGACCGCTTGACCGAGAGCCTGGTGGTTGTGAGCCAA
GCTCGGGCCATTCAACAGCTGGTCAATGCGCTGAGCGACGGGTTATACTC
TGGAGACAAAGTAACCAAGCTAGCTCTCATCGGGGCGCAGGCCCGGACTG
CGGCAAGAGCGGTCCTTGAAGTGCTGGCAGACGGTCGGGGCTGCATGCAA
TGGAACGCGGCTCAACTCGCAAAGCCAGGTGACTGGGTGACATCGACGGG
CGGTGTGCGTGATGCTTTGGTCCAGGCGTCCCAGGCGGTGGGCGTAGACG
GGGAGTTGGTGGTGATTGTGAAGCACATGGAGAAGGTGGAGTGCGGCAAT
CTCATGCACCTGAACAACTTAATGCTTGCCATGGATTCGGGTTCTTCATT
GAGGGCGGAGGGCAGCTTGATCCCCACCTTCTTCTTCATGTTTGAACAAG
ACCCTCCTCGCCGGGCGATGGTGGATGGCGGAATTCGCAGCCACCTGGTG
GAAGCCATCGACATGCGTTGTCACCCAGGGCCTGGTCTCAACCTCCGCGC
CTTCTTTGGGCGCCTCGAGCCCATTACGTTCGCGCCCTTGCCTACGGACG
CTTCCCCTGACACCCGGCCTCTCAGCGGCACCTTGCCAAGCGGAGGGCGC
GGGCGGCGGGATCTTTGGGGCTTGGCGTGGCCCTTTGGCAAGCAAGGCGA
TCTTTCTGTTACCTGCAAACTTCTAGCCATGGTAGTTGTAGGCCTTGGGA
CCTACACCCTTGTCCGGGCCGCCACTGCTGCTGTCCGACAAAGGGATGTT
GCCGAGAGGACACCTTCTCCCGCGCTAGGGTCAGGGATCCCACCCAGCAA
GCTGCTTAACGGGGTCGAGCTTGATGAATGCATGACAGGAACAGGGGCAG
TGGAGACGCTGATGACAACCGTACGGGGTGGCAAGGACACGCCGGCCAGC
GCCACTCGTCGTCATGCAGCACAGGAAAGGACAGACGAGGCCGGTGGGGG
AAAGGCCACGAATGGGGGTGTTGTCAAGCCCAAAAAAGCGAGTGTGGCCA
AGAGAGCCGCCTCACCCAAGCCAGGTCATCGAGCGCCAAGGTGA
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Synonyms
Publications