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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:503725..505326 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G01590.1 vs.
Match: EWM24642.1 (hypothetical protein Naga_100055g20 [Nannochloropsis gaditana]) HSP 1 Score: 264.6 bits (675), Expect = 4.900e-67 Identity = 155/332 (46.69%), Postives = 209/332 (62.95%), Query Frame = 0
Query: 14 QLLGYVLLMVLLQIVPASRDEATMKDRLTESLVVVSQARAIQQLVNALSDGLYSGDKVTKLALIGAQARTAARAVLEVLADGRGCMQWNAAQLAKPGDWVTSTGGVRDALVQASQAVGVDGELVVIVKHMEKVECGNLMHLNNLMLAMDSGSSLRAEGSLIPTFFFMFEQDPPRRAMVDGGIRSHLVEAIDMRCHPGPGLNLRAFFGRLEPITFAPLPTDASPDTRPLSGTLPSGGRGRRDLWGLAWPFGKQGDLSVTCKLLAMVVVGLGTYTLVRAATAAVRQRDVAERTPSPALGSGIPPSKLLNGVELDECMTGTGAVETLMTTVRGGK 346
+L +LLM++LQ+VPASRDE ++ RLTE+LVVV+Q+RAIQQL LS + + ALIG+Q+R+AARAVL VL D RGC+ WN++Q A+P WVTS VRDA+ QA++ DGE+V++V+HMEK+ C N+M+LNNLMLAMD + + L T FF+FE+DPP ++DGG+RSHL E ID RC PGP LNL+AFFGR PITF P+P D DT+PL T+P + + W +W L++T KLL + +G + +A R+R V + GS + G E C +ETL T+VRGGK
Sbjct: 18 RLASCILLMIMLQMVPASRDERQLRTRLTEALVVVNQSRAIQQLATKLSAEIR---REVSFALIGSQSRSAARAVLGVLTDRRGCLHWNSSQ-AEPDAWVTSRAKVRDAIAQAAEVRRTDGEVVLVVEHMEKLHCDNIMYLNNLMLAMDRSTDSGVD-PLPTTLFFLFEEDPPPGVLMDGGVRSHLAEGIDERCRPGPELNLKAFFGRTVPITFLPVPDDVPRDTQPLCSTIPL--KHDKASWASSWLSDSHWSLNLTGKLLVVAAMG----WVANVCVSAARRRIVGKAVSVTTSGSE------MEGGESKNC---RATLETL-TSVRGGK 328
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G01590.1 ID=NO14G01590.1|Name=NO14G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp ACAGAAAAGCTTTCGAAAGGCTGCGTTGCGCTTTTGTCCCCGTGATCGCC CACTCCAAACACGTCTCAACCCGGACGTGTCGTCATGATGGCTGCCCACC GCCATATTTGGAGCGTGCCGCGCCAGCTCCTGGGATATGTCCTGCTGATG GTGTTGCTGCAGATTGTGCCGGCCTCTCGGGATGAAGCGACGATGAAGGA CCGCTTGACCGAGAGCCTGGTGGTTGTGAGCCAAGCTCGGGCCATTCAAC AGCTGGTCAATGCGCTGAGCGACGGGTTATACTCTGGAGACAAAGTAACC AAGCTAGCTCTCATCGGGGCGCAGGCCCGGACTGCGGCAAGAGCGGTCCT TGAAGTGCTGGCAGACGGTCGGGGCTGCATGCAATGGAACGCGGCTCAAC TCGCAAAGCCAGGTGACTGGGTGACATCGACGGGCGGTGTGCGTGATGCT TTGGTCCAGGCGTCCCAGGCGGTGGGCGTAGACGGGGAGTTGGTGGTGAT TGTGAAGCACATGGAGAAGGTGGAGTGCGGCAATCTCATGCACCTGAACA ACTTAATGCTTGCCATGGATTCGGGTTCTTCATTGAGGGCGGAGGGCAGC TTGATCCCCACCTTCTTCTTCATGTTTGAACAAGACCCTCCTCGCCGGGC GATGGTGGATGGCGGAATTCGCAGCCACCTGGTGGAAGCCATCGACATGC GTTGTCACCCAGGGCCTGGTCTCAACCTCCGCGCCTTCTTTGGGCGCCTC GAGCCCATTACGTTCGCGCCCTTGCCTACGGACGCTTCCCCTGACACCCG GCCTCTCAGCGGCACCTTGCCAAGCGGAGGGCGCGGGCGGCGGGATCTTT GGGGCTTGGCGTGGCCCTTTGGCAAGCAAGGCGATCTTTCTGTTACCTGC AAACTTCTAGCCATGGTAGTTGTAGGCCTTGGGACCTACACCCTTGTCCG GGCCGCCACTGCTGCTGTCCGACAAAGGGATGTTGCCGAGAGGACACCTT CTCCCGCGCTAGGGTCAGGGATCCCACCCAGCAAGCTGCTTAACGGGGTC GAGCTTGATGAATGCATGACAGGAACAGGGGCAGTGGAGACGCTGATGAC AACCGTACGGGGTGGCAAGGACACGCCGGCCAGCGCCACTCGTCGTCATG CAGCACAGGAAAGGACAGACGAGGCCGGTGGGGGAAAGGCCACGAATGGG GGTGTTGTCAAGCCCAAAAAAGCGAGTGTGGCCAAGAGAGCCGCCTCACC CAAGCCAGGTCATCGAGCGCCAAGGTGAGCAGCATTTACAAAGCAAAAGA ATGAATACGAAGGAGGAAGAGAAGCATGTGAATGTATATGCGAATACGTC GCCACTTTCATGTACGCTTGTTAATTTGTATATCCCCCAGTCAGAAAAAA GGAAAACCCCAAAAGAAGCAAAAAATATAATAGTCGT back to topprotein sequence of NO14G01590.1 >NO14G01590.1-protein ID=NO14G01590.1-protein|Name=NO14G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp MMAAHRHIWSVPRQLLGYVLLMVLLQIVPASRDEATMKDRLTESLVVVSQ ARAIQQLVNALSDGLYSGDKVTKLALIGAQARTAARAVLEVLADGRGCMQ WNAAQLAKPGDWVTSTGGVRDALVQASQAVGVDGELVVIVKHMEKVECGN LMHLNNLMLAMDSGSSLRAEGSLIPTFFFMFEQDPPRRAMVDGGIRSHLV EAIDMRCHPGPGLNLRAFFGRLEPITFAPLPTDASPDTRPLSGTLPSGGR GRRDLWGLAWPFGKQGDLSVTCKLLAMVVVGLGTYTLVRAATAAVRQRDV AERTPSPALGSGIPPSKLLNGVELDECMTGTGAVETLMTTVRGGKDTPAS ATRRHAAQERTDEAGGGKATNGGVVKPKKASVAKRAASPKPGHRAPR* back to topmRNA from alignment at chr14:503725..505326- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G01590.1 ID=NO14G01590.1|Name=NO14G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1602bp|location=Sequence derived from alignment at chr14:503725..505326- (Nannochloropsis oceanica) ACAGAAAAGCTTTCGAAAGGCTGCGTTGCGCTTTTGTCCCCGTGATCGCC
CACTCCAAACACGTCTCAACCCGGACGTGTCGTCATGATGGCTGCCCACC
GCCATATTTGGAGCGTGCCGCGCCAGCTCCTGGGATATGTCCTGCTGATG
GTGTTGCTGCAGATTGTGCCGGCCTCTCGGGATGAAGCGACGATGAAGGA
CCGCTTGAGTAAGTGTGGAGTTTCTTAACCTCTCCTTTCCAAGTTTCCCA
TTCATATACATGTACCTCTCATACCAGCCCGGTCATGCTCACACCTACAA
TATGTTGTCTTTTCTACTCCACGCCTCTCCCAACACCATGCCGTCATGTC
TCTATACACCACTGAATACACAGCCGAGAGCCTGGTGGTTGTGAGCCAAG
CTCGGGCCATTCAACAGCTGGTCAATGCGCTGAGCGACGGGTTATACTCT
GGAGACAAAGTAACCAAGCTAGCTCTCATCGGGGCGCAGGCCCGGACTGC
GGCAAGAGCGGTCCTTGAAGTGCTGGCAGACGGTCGGGGCTGCATGCAAT
GGAACGCGGCTCAACTCGCAAAGCCAGGTGACTGGGTGACATCGACGGGC
GGTGTGCGTGATGCTTTGGTCCAGGCGTCCCAGGCGGTGGGCGTAGACGG
GGAGTTGGTGGTGATTGTGAAGCACATGGAGAAGGTGGAGTGCGGCAATC
TCATGCACCTGAACAACTTAATGCTTGCCATGGATTCGGGTTCTTCATTG
AGGGCGGAGGGCAGCTTGATCCCCACCTTCTTCTTCATGTTTGAACAAGA
CCCTCCTCGCCGGGCGATGGTGGATGGCGGAATTCGCAGCCACCTGGTGG
AAGCCATCGACATGCGTTGTCACCCAGGGCCTGGTCTCAACCTCCGCGCC
TTCTTTGGGCGCCTCGAGCCCATTACGTTCGCGCCCTTGCCTACGGACGC
TTCCCCTGACACCCGGCCTCTCAGCGGCACCTTGCCAAGCGGAGGGCGCG
GGCGGCGGGATCTTTGGGGCTTGGCGTGGCCCTTTGGCAAGCAAGGCGAT
CTTTCTGTTACCTGCAAACTTCTAGCCATGGTAGTTGTAGGCCTTGGGAC
CTACACCCTTGTCCGGGCCGCCACTGCTGCTGTCCGACAAAGGGATGTTG
CCGAGAGGACACCTTCTCCCGCGCTAGGGTCAGGGATCCCACCCAGCAAG
CTGCTTAACGGGGTCGAGCTTGATGAATGCATGACAGGAACAGGGGCAGT
GGAGACGCTGATGACAACCGTACGGGGTGGCAAGGACACGCCGGCCAGCG
CCACTCGTCGTCATGCAGCACAGGAAAGGACAGACGAGGCCGGTGGGGGA
AAGGCCACGAATGGGGGTGTTGTCAAGCCCAAAAAAGCGAGTGTGGCCAA
GAGAGCCGCCTCACCCAAGCCAGGTCATCGAGCGCCAAGGTGAGCAGCAT
TTACAAAGCAAAAGAATGAATACGAAGGAGGAAGAGAAGCATGTGAATGT
ATATGCGAATACGTCGCCACTTTCATGTACGCTTGTTAATTTGTATATCC
CCCAGTCAGAAAAAAGGAAAACCCCAAAAGAAGCAAAAAATATAATAGTC
GT back to topCoding sequence (CDS) from alignment at chr14:503725..505326- >NO14G01590.1 ID=NO14G01590.1|Name=NO14G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr14:503725..505326- (Nannochloropsis oceanica) ATGATGGCTGCCCACCGCCATATTTGGAGCGTGCCGCGCCAGCTCCTGGG ATATGTCCTGCTGATGGTGTTGCTGCAGATTGTGCCGGCCTCTCGGGATG AAGCGACGATGAAGGACCGCTTGACCGAGAGCCTGGTGGTTGTGAGCCAA GCTCGGGCCATTCAACAGCTGGTCAATGCGCTGAGCGACGGGTTATACTC TGGAGACAAAGTAACCAAGCTAGCTCTCATCGGGGCGCAGGCCCGGACTG CGGCAAGAGCGGTCCTTGAAGTGCTGGCAGACGGTCGGGGCTGCATGCAA TGGAACGCGGCTCAACTCGCAAAGCCAGGTGACTGGGTGACATCGACGGG CGGTGTGCGTGATGCTTTGGTCCAGGCGTCCCAGGCGGTGGGCGTAGACG GGGAGTTGGTGGTGATTGTGAAGCACATGGAGAAGGTGGAGTGCGGCAAT CTCATGCACCTGAACAACTTAATGCTTGCCATGGATTCGGGTTCTTCATT GAGGGCGGAGGGCAGCTTGATCCCCACCTTCTTCTTCATGTTTGAACAAG ACCCTCCTCGCCGGGCGATGGTGGATGGCGGAATTCGCAGCCACCTGGTG GAAGCCATCGACATGCGTTGTCACCCAGGGCCTGGTCTCAACCTCCGCGC CTTCTTTGGGCGCCTCGAGCCCATTACGTTCGCGCCCTTGCCTACGGACG CTTCCCCTGACACCCGGCCTCTCAGCGGCACCTTGCCAAGCGGAGGGCGC GGGCGGCGGGATCTTTGGGGCTTGGCGTGGCCCTTTGGCAAGCAAGGCGA TCTTTCTGTTACCTGCAAACTTCTAGCCATGGTAGTTGTAGGCCTTGGGA CCTACACCCTTGTCCGGGCCGCCACTGCTGCTGTCCGACAAAGGGATGTT GCCGAGAGGACACCTTCTCCCGCGCTAGGGTCAGGGATCCCACCCAGCAA GCTGCTTAACGGGGTCGAGCTTGATGAATGCATGACAGGAACAGGGGCAG TGGAGACGCTGATGACAACCGTACGGGGTGGCAAGGACACGCCGGCCAGC GCCACTCGTCGTCATGCAGCACAGGAAAGGACAGACGAGGCCGGTGGGGG AAAGGCCACGAATGGGGGTGTTGTCAAGCCCAAAAAAGCGAGTGTGGCCA AGAGAGCCGCCTCACCCAAGCCAGGTCATCGAGCGCCAAGGTGA back to top
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