NO14G01510.1, NO14G01510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01510.1
Unique NameNO14G01510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length768
Alignment locationchr14:475732..476499 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:475732..476499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01510.1 vs.
Match: EWM24638.1 (Uncharacterized protein family UPF0001 [Nannochloropsis gaditana])

HSP 1 Score: 336.7 bits (862), Expect = 6.500e-89
Identity = 177/236 (75.00%), Postives = 194/236 (82.20%), Query Frame = 0 
Query:    1 MNGKNVAENLAMIRLRVEEAAKGAEMVPLPRLVAVSKTKPGEALQEAYNAGQRHFGENYVNEVLEKARELPKDIKWHFIGHLQSNKVKPLVAQVANLWMVEAVDSSKLADRLQAAAATVLETERKGEPLKVLVQVDTSGEDTKSGVAADEAVEIAQHILANCPALSFAGVMTIGAPGDLTCFDKLVETRQRVASATGLEAASLELSMGMSGDFEEAIARGSTNVRVGSLIFGERSY 237
            MN   V ENLA +R RV+E AKG E  P PRLVAVSKTKP  AL+EAY+AGQRHFGENY +EVLEKA ELP D+KWHFIGHLQSNK K LV QV NLWMVEAVDS KLADRLQAA A VLET RKGE LK+LVQ+DTSGE TKSG   ++A  IAQH+ A CPAL FAGVMTIGA GD+TCFDKLV+ R+ +A ATGL+AASLELSMGMS DFEEAIARGSTN+RVGS IFG R Y
Sbjct:   74 MNCGTVGENLARVRHRVKEVAKGLE--PPPRLVAVSKTKPVAALKEAYDAGQRHFGENYSHEVLEKAPELPDDVKWHFIGHLQSNKAKALVEQVPNLWMVEAVDSIKLADRLQAATAGVLETRRKGERLKILVQIDTSGEATKSGKRTEDAAVIAQHVTAQCPALQFAGVMTIGASGDMTCFDKLVDAREAIARATGLDAASLELSMGMSNDFEEAIARGSTNIRVGSTIFGARQY 307
The following BLAST results are available for this feature:
BLAST of NO14G01510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24638.16.500e-8975.00Uncharacterized protein family UPF0001 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01510NO14G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01510.1NO14G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01510.1.cds1NO14G01510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01510.1 ID=NO14G01510.1|Name=NO14G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=768bp
ATGAACGGCAAAAACGTGGCGGAGAACCTGGCGATGATCCGCCTTCGAGT
GGAGGAGGCGGCCAAGGGCGCGGAAATGGTCCCTCTCCCCCGCCTAGTGG
CCGTGAGTAAGACCAAGCCGGGCGAGGCCTTGCAAGAGGCATACAACGCG
GGCCAGCGTCACTTTGGCGAGAACTATGTGAACGAGGTGTTGGAAAAGGC
GCGGGAGCTACCCAAAGACATTAAGTGGCATTTTATAGGACACTTGCAAT
CCAACAAGGTCAAACCTTTGGTGGCCCAGGTCGCCAACTTGTGGATGGTA
GAGGCGGTGGACTCGTCTAAGCTCGCCGACCGTCTCCAGGCTGCCGCAGC
CACCGTCCTCGAAACGGAACGCAAAGGTGAGCCTCTCAAAGTACTGGTTC
AAGTGGACACGAGCGGAGAAGACACCAAGTCAGGCGTGGCGGCCGACGAG
GCGGTGGAGATTGCGCAGCATATCCTAGCCAACTGCCCGGCCCTCAGCTT
TGCGGGTGTCATGACTATCGGCGCCCCGGGAGACCTGACATGCTTTGACA
AGTTAGTGGAGACCCGACAACGTGTTGCGAGCGCTACGGGCTTGGAGGCG
GCGTCACTAGAACTGAGTATGGGCATGTCGGGCGACTTTGAGGAGGCTAT
TGCCCGCGGCAGCACCAACGTGCGTGTGGGCAGCTTAATTTTTGGAGAGC
GGTCTTATCCGCCGAGGAAGGGTACATCAGAAAGCTCACCGACAGCGACA
ACGACGACATTGAAGTAG
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protein sequence of NO14G01510.1

>NO14G01510.1-protein ID=NO14G01510.1-protein|Name=NO14G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MNGKNVAENLAMIRLRVEEAAKGAEMVPLPRLVAVSKTKPGEALQEAYNA
GQRHFGENYVNEVLEKARELPKDIKWHFIGHLQSNKVKPLVAQVANLWMV
EAVDSSKLADRLQAAAATVLETERKGEPLKVLVQVDTSGEDTKSGVAADE
AVEIAQHILANCPALSFAGVMTIGAPGDLTCFDKLVETRQRVASATGLEA
ASLELSMGMSGDFEEAIARGSTNVRVGSLIFGERSYPPRKGTSESSPTAT
TTTLK*
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mRNA from alignment at chr14:475732..476499-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01510.1 ID=NO14G01510.1|Name=NO14G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=768bp|location=Sequence derived from alignment at chr14:475732..476499- (Nannochloropsis oceanica)
ATGAACGGCAAAAACGTGGCGGAGAACCTGGCGATGATCCGCCTTCGAGT
GGAGGAGGCGGCCAAGGGCGCGGAAATGGTCCCTCTCCCCCGCCTAGTGG
CCGTGAGTAAGACCAAGCCGGGCGAGGCCTTGCAAGAGGCATACAACGCG
GGCCAGCGTCACTTTGGCGAGAACTATGTGAACGAGGTGTTGGAAAAGGC
GCGGGAGCTACCCAAAGACATTAAGTGGCATTTTATAGGACACTTGCAAT
CCAACAAGGTCAAACCTTTGGTGGCCCAGGTCGCCAACTTGTGGATGGTA
GAGGCGGTGGACTCGTCTAAGCTCGCCGACCGTCTCCAGGCTGCCGCAGC
CACCGTCCTCGAAACGGAACGCAAAGGTGAGCCTCTCAAAGTACTGGTTC
AAGTGGACACGAGCGGAGAAGACACCAAGTCAGGCGTGGCGGCCGACGAG
GCGGTGGAGATTGCGCAGCATATCCTAGCCAACTGCCCGGCCCTCAGCTT
TGCGGGTGTCATGACTATCGGCGCCCCGGGAGACCTGACATGCTTTGACA
AGTTAGTGGAGACCCGACAACGTGTTGCGAGCGCTACGGGCTTGGAGGCG
GCGTCACTAGAACTGAGTATGGGCATGTCGGGCGACTTTGAGGAGGCTAT
TGCCCGCGGCAGCACCAACGTGCGTGTGGGCAGCTTAATTTTTGGAGAGC
GGTCTTATCCGCCGAGGAAGGGTACATCAGAAAGCTCACCGACAGCGACA
ACGACGACATTGAAGTAG
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Coding sequence (CDS) from alignment at chr14:475732..476499-

>NO14G01510.1 ID=NO14G01510.1|Name=NO14G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr14:475732..476499- (Nannochloropsis oceanica)
ATGAACGGCAAAAACGTGGCGGAGAACCTGGCGATGATCCGCCTTCGAGT
GGAGGAGGCGGCCAAGGGCGCGGAAATGGTCCCTCTCCCCCGCCTAGTGG
CCGTGAGTAAGACCAAGCCGGGCGAGGCCTTGCAAGAGGCATACAACGCG
GGCCAGCGTCACTTTGGCGAGAACTATGTGAACGAGGTGTTGGAAAAGGC
GCGGGAGCTACCCAAAGACATTAAGTGGCATTTTATAGGACACTTGCAAT
CCAACAAGGTCAAACCTTTGGTGGCCCAGGTCGCCAACTTGTGGATGGTA
GAGGCGGTGGACTCGTCTAAGCTCGCCGACCGTCTCCAGGCTGCCGCAGC
CACCGTCCTCGAAACGGAACGCAAAGGTGAGCCTCTCAAAGTACTGGTTC
AAGTGGACACGAGCGGAGAAGACACCAAGTCAGGCGTGGCGGCCGACGAG
GCGGTGGAGATTGCGCAGCATATCCTAGCCAACTGCCCGGCCCTCAGCTT
TGCGGGTGTCATGACTATCGGCGCCCCGGGAGACCTGACATGCTTTGACA
AGTTAGTGGAGACCCGACAACGTGTTGCGAGCGCTACGGGCTTGGAGGCG
GCGTCACTAGAACTGAGTATGGGCATGTCGGGCGACTTTGAGGAGGCTAT
TGCCCGCGGCAGCACCAACGTGCGTGTGGGCAGCTTAATTTTTGGAGAGC
GGTCTTATCCGCCGAGGAAGGGTACATCAGAAAGCTCACCGACAGCGACA
ACGACGACATTGAAGTAG
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Synonyms
Publications