NO14G01480.1, NO14G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01480.1
Unique NameNO14G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3278
Alignment locationchr14:466682..470226 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:466682..470226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01480.1 vs.
Match: XP_012211301.1 (hypothetical protein SPRG_16605 [Saprolegnia parasitica CBS 223.65]; KDO17988.1 hypothetical protein SPRG_16605 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 97.4 bits (241), Expect = 1.200e-16
Identity = 64/228 (28.07%), Postives = 108/228 (47.37%), Query Frame = 0 
Query:  204 SGKHKDLYNIMDTTYIDSLYGAILLKLDRGRYEELTSGIIEEDDEHVP-------ARLDLKALRRVIDCNMEDYLRKVPLFRDISAAKLAVLGEMCNYEFIKTGHRVCSEGDAGNEIFIVLDGHLDVFTSGNGEVLP---------------------------LATLGPGDYFGELAALIRIKRIATVLSTEDTLLASIKRHDFRSFMTIMPDVRTAMDKVVKEHLL 398
            SGK+      + T   D   G ++L+L+R R+ ++ S  I +   H+        A  D + +  + D  + DYL  VP F D+++ +L  L  +C++  ++    VC E D G+  +I ++G L V T  N    P                           +  L  G YFGE++ L+ +KR ATV + E +LL  I+   FR+F+ + PDV++A+ +V+   LL
Sbjct:  117 SGKNVTAMLDLVTVTADKKEGCVVLRLNRERFLKIRSKHIRDGTYHLTINRATKSATDDWQLISSIADEQVVDYLAGVPFFADVTSTRLLGLAGLCSFLVVQKDDVVCRENDLGDRFYICIEGLLQV-TVANQTAKPTLRVSSKSISQRRLERHRPSLAMSEVLIRRLANGSYFGEISLLLNVKRSATVKAVETSLLVYIEAPAFRNFIKVCPDVKSALQEVIIARLL 343
The following BLAST results are available for this feature:
BLAST of NO14G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_012211301.11.200e-1628.07hypothetical protein SPRG_16605 [Saprolegnia paras... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01480NO14G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01480.1NO14G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01480.1.cds1NO14G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01480.1.cds2NO14G01480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01480.1 ID=NO14G01480.1|Name=NO14G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=3278bp
AAGCCACGCTCGATGGGCAACGGGGCGAGTAGCGTCATGAAAGCCACGGG
CGGTGGCGTCCTGTCGCAAGCTAGCTGCCTGGGTGGGGAGAACTTCCAGA
CCAAATTGAGCATGCTCAAAGAGACACCCTTGGGCAAGGTCTTGTCTGAG
ACTGACCTTGCTTATTTCTCTTCATTTTTTAGTCTCGAGACCTTGGTTCC
ACATTGCCACGTGCCAATGTGTGCAGGGGAGTTGCTGGTCGTGGGGGAGG
GAGAAGTCCAAGTGTACGTCATCCAAGCCGGCCTCGATGCCAAGACAAAA
GAGCAAAGTTTTGTCTTATGTACCAAGCGTAAAGGTGATCTGATTTGGGT
TCCCAGTGTGACGCGTCTGGCCAAGCAAAAGTCCTCTTCGGATGATGGCA
GCAGCGGCGCAAACTACTCTCTACCGGGTGCAGTCGTCGAGCAGGGCGCG
GGTGTAATGATTACCAACACTACCACGGACATCTCATTCAAAAATTCCAT
CTCAGGCAAGCACAAAGAATTGCACAACATCATGGATACTACATACATTG
ACTCGGGTGCAGGTGCAAGGACAAAGAACACCACCAACAGCAACACGGAA
GTAGAACTTAGGAAGTCCCATTCAGGCAAGCACAAAGACTTGTACAACAT
CATGGATACTACGTATATTGATTCCCTCTACGGTGCCATCCTGCTCAAGC
TTGACCGTGGACGGTATGAGGAATTAACATCCGGTATCATCGAAGAAGAT
GATGAGCACGTCCCCGCTCGCCTCGACCTGAAAGCGCTCCGCCGCGTTAT
TGACTGCAATATGGAGGACTATCTCCGCAAGGTGCCTTTATTTCGGGATA
TATCGGCGGCCAAGCTTGCCGTGCTTGGAGAGATGTGCAACTATGAGTTC
ATCAAGACGGGCCACCGAGTGTGCTCGGAGGGCGATGCCGGCAACGAGAT
ATTTATCGTCTTGGACGGCCACCTCGATGTCTTCACCAGTGGCAACGGTG
AAGTGCTGCCTTTGGCGACGCTGGGTCCAGGCGACTATTTTGGGGAGCTG
GCTGCCCTCATCCGTATCAAGCGCATCGCTACTGTCCTCTCCACAGAGGA
TACGTTGCTCGCTTCCATCAAACGTCACGATTTCCGCTCTTTCATGACCA
TCATGCCCGACGTGCGCACCGCCATGGACAAGGTCGTCAAAGAGCACCTC
CTCTACAAATATGCTAAGATTGGCAACCGCTTCTTTCCCACAACCCCCCC
CCTACAACTCTTAACTCTGTATCGTCCTCGTCATCATCATTATCTTCCTC
CTCCACCTCCCCTTCCCCCTACTTCTCCACCCTCTCATCCTTACTGTCCC
CAACCGAAATCAACAACCGACGCATGGCCTTATACAATCTATGTGAGGTA
GAAGACGTAGATCCGGATAGTATTCTGCTCTATGAGCATGATGGCCCTGG
TGATATATATTTTTTGAGCGAGGGCCAGGTCCGACTCGTGCGCCGGGAGG
AGGACGGCTCAGGCACCAGCATCGTCCTGACGGCAGGCTCCATTCTGGGT
GCACGCGCTGCTGTGCTCAAGGCCCCGCAGCAGTACACGGCCGTGACGGA
GCAGGTGTGCGTCTTCCTTAAGCTGGGCCCGGCCGCTATTGCGCAGCACT
TTGCCGATCATCCAGAGGTCAAGGCTACTCTCGAGGTCCTATTCAAACGG
CGAGGCACCCCTTTGGCAACACTGCTTGCATGTCCCGACGCTCACCAAGC
TTTTGAGGCCCACTTGAAAGAGGAGTTTACTTTGGAGCATCTCAGCTTTT
ACGACGACGTACTTGATTTCCAGCGGTTTATGGATGAATTTGGGAGATCA
GAAGCTATATGCACAGCTGGGAAGAGCAGCAGTGAACGACTCCCCACGAG
TGCACATGTGCAAGCTGCAGTGGCTAAACTGGCTGAGATACATCACCTAT
ATCTGGGCATTGACGCACCTAGCCCAATAAATATCCCCGATGCCCAGCGC
CAGCGTTTCCTCGCAGCCTACTACGTCCACGTTGGTAATAGTGGGGCTAA
TCCGGAGCTCGAGCGACTGCGACGCCTGGCCAAGCAGCTGGAGGAGATGA
AGCGGGAGGTTTTGGCACTACTGGAACGAGATAACTATTCCCGATTTAAG
AACACAGTTGCATTTCCCCAGCTCCTTGCTAGCCTGGCGGCGCACCTGCC
CACGGAGCCAGCGGTGCCCAGTCTAGCGTAACTCAACAATGGCGGTAGTG
ATAACACTAGCCCCGCAGCAACCTGTCAAAAGCCAAGAAAGCGGTGTTTG
AGACCTCTTTTGGCAGTAGCAGCACCAGCAGTACCAGCAACAGCGCGAAG
GCCGAAAAATTGTTAAGTAGTGTGTGAGAAGATGGGAATCAAGCAACAAG
GTAAATATTCAACATTATGTTGCCAGGTTAATCATTCCACGTTTCATCGT
ACATTTTTACTATTTGGGGCTATCGAACAATTTTGCGACTCAAATACCCC
CACCGCAAAAGTAAGGGTGGAAGAAGTGAGGAGATTTTTCGAGATTTCTG
ATTTGCCAACTTTGACAGTGCTGGGGAATTTCAAGCAGCCTTTCTGCAAG
AGAAACTATCATGTGGAGGAATAAAGAAGCACTGTTTGGTGAGGCAACAT
GTGAACGGGGGATCTAGAATTACCTTGATTGATATCTCAAATGAGAAGCT
ATTTTAGGAGGCTTTCCCGCAAGCCGCGAAGTTTAACGACCACAGTAAAG
GCCTGACACCATCCGGGGCCACACTCACCAAGGTTTCACTTTGTGACACT
ATAAAGGCTAAGGGGAGGTACAGTACAAGTATAAAAATTCAATTGACGGT
TGCATATAATTTTAGAAAGGATAAAAATGTCGATCGGGAGAAGTGCAAAT
GGGATTTGGCCTTGCAAAGGGAGACAGAGCTTTTATTTCAAGGCAGACCG
AAGCATCGAACTTTCTGATTTCATAATGGTCAATGACGGGCACCCATGTG
TCAGAGTTATACAAGCCCCGTTATTCTTATGTTCACAAGACTTAAGCGCC
CTGCCCATGATGGTGGGATGCCTTACACAGTAAAGTTTCAGCCTGTTTTC
GGCACGTGCCATATAATAAGTACTTCCCCGGAGGTTGTAAGAGCACCGAT
ATAGTGATACCCCCAGCAAGTACGTTGCGTGCCATCAACAAATGACAGAG
AAAACTTCCTATTATGCCAGGGCCGCAAGGCTAATCTTGGGACGAAAGAA
AAAAAGCTAGCACCCCAGTAAGCAGCAT
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protein sequence of NO14G01480.1

>NO14G01480.1-protein ID=NO14G01480.1-protein|Name=NO14G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MGNGASSVMKATGGGVLSQASCLGGENFQTKLSMLKETPLGKVLSETDLA
YFSSFFSLETLVPHCHVPMCAGELLVVGEGEVQVYVIQAGLDAKTKEQSF
VLCTKRKGDLIWVPSVTRLAKQKSSSDDGSSGANYSLPGAVVEQGAGVMI
TNTTTDISFKNSISGKHKELHNIMDTTYIDSGAGARTKNTTNSNTEVELR
KSHSGKHKDLYNIMDTTYIDSLYGAILLKLDRGRYEELTSGIIEEDDEHV
PARLDLKALRRVIDCNMEDYLRKVPLFRDISAAKLAVLGEMCNYEFIKTG
HRVCSEGDAGNEIFIVLDGHLDVFTSGNGEVLPLATLGPGDYFGELAALI
RIKRIATVLSTEDTLLASIKRHDFRSFMTIMPDVRTAMDKVVKEHLLYKY
AKIGNRFFPTTPPLQLLTLYRPRHHHYLPPPPPLPPTSPPSHPYCPQPKS
TTDAWPYTIYVR*
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mRNA from alignment at chr14:466682..470226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01480.1 ID=NO14G01480.1|Name=NO14G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=3545bp|location=Sequence derived from alignment at chr14:466682..470226- (Nannochloropsis oceanica)
AAGCCACGCTCGATGGGCAACGGGGCGAGTAGCGTCATGAAAGCCACGGG
CGGTGGCGTCCTGTCGCAAGCTAGCTGCCTGGGTGGGGAGAACTTCCAGA
CCAAATTGAGCATGCTCAAAGAGACACCCTTGGGCAAGGTCTTGTCTGAG
ACTGACCTTGCTTATTTCTCTTCATTTTTTAGTCTCGAGACCTTGGTTCC
ACATTGCCACGTGCCAATGTGTGCAGGGGAGTTGCTGGTCGTGGGGGAGG
GAGAAGTCCAAGTGTACGTCATCCAAGCCGGCCTCGATGCCAAGACAAAA
GAGCAAAGTTTTGTCTTATGTACCAAGCGTAAAGGTGATCTGATTTGGGT
TCCCAGTGTGACGCGTCTGGCCAAGCAAAAGTCCTCTTCGGATGATGGCA
GCAGCGGCGCAAACTACTCTCTACCGGGTGCAGTCGTCGAGCAGGGCGCG
GGTGTAATGATTACCAACACTACCACGGACATCTCATTCAAAAATTCCAT
CTCAGGCAAGCACAAAGAATTGCACAACATCATGGATACTACATACATTG
ACTCGGGTGCAGGTGCAAGGACAAAGAACACCACCAACAGCAACACGGAA
GTAGAACTTAGGAAGTCCCATTCAGGCAAGCACAAAGACTTGTACAACAT
CATGGATACTACGTATATTGATTCCCTCTACGGTGCCATCCTGCTCAAGG
TAACAAGTCAATGGTGGGCCTCCTTTGATGCTATTTTTGTGTAATGCTGT
CCTTTTCCCCTGCTCATCGTGCCCCTATCAACCACTCAACTATTTGACAC
ACGCTTGCTGTATTCATTGGTGCCACTGCTTTACTTCCTGTTCTTTGCAG
CTTGACCGTGGACGGTATGAGGAATTAACATCCGGTATCATCGAAGAAGA
TGATGAGCACGTCCCCGCTCGCCTCGACCTGAAAGCGCTCCGCCGCGTTA
TTGACTGCAATATGGAGGACTATCTCCGCAAGGTGCCTTTATTTCGGGAT
ATATCGGCGGCCAAGCTTGCCGTGCTTGGAGAGATGTGCAACTATGAGTT
CATCAAGACGGGCCACCGAGTGTGCTCGGAGGGCGATGCCGGCAACGAGA
TATTTATCGTCTTGGACGGCCACCTCGATGTCTTCACCAGTGGCAACGGT
GAAGTGCTGCCTTTGGCGACGCTGGGTCCAGGCGACTATTTTGGGGAGCT
GGCTGCCCTCATCCGTATCAAGCGCATCGCTACTGTCCTCTCCACAGAGG
ATACGTTGCTCGCTTCCATCAAACGTCACGATTTCCGCTCTTTCATGACC
ATCATGCCCGACGTGCGCACCGCCATGGACAAGGTCGTCAAAGAGCACCT
CCTCTACAAATATGCTAAGATTGGCAACCGCTTCTTTCCCACAACCCCCC
CCCTACAACTCTTAACTCTGTATCGTCCTCGTCATCATCATTATCTTCCT
CCTCCACCTCCCCTTCCCCCTACTTCTCCACCCTCTCATCCTTACTGTCC
CCAACCGAAATCAACAACCGACGCATGGCCTTATACAATCTATGTGAGGT
AGAAGACGTAGATCCGGATAGTATTCTGCTCTATGAGCATGATGGCCCTG
GTGATATATATTTTTTGAGCGAGGGCCAGGTCCGACTCGTGCGCCGGGAG
GAGGACGGCTCAGGCACCAGCATCGTCCTGACGGCAGGCTCCATTCTGGG
TGCACGCGCTGCTGTGCTCAAGGCCCCGCAGCAGTACACGGCCGTGACGG
AGCAGGTGTGCGTCTTCCTTAAGCTGGGCCCGGCCGCTATTGCGCAGCAC
TTTGCCGATCATCCAGAGGTCAAGGCTACTCTCGAGGTCCTATTCAAACG
GCGAGGCACCCCTTTGGCAACACTGCTTGCATGTCCCGACGCTCACCAAG
CTTTTGAGGCCCACTTGAAAGAGGAGTTTACTTTGGAGCATCTCAGCTTT
TACGACGACGTACTTGATTTCCAGCGGTTTATGGATGAATTTGGGAGATC
AGAAGCTATATGCACAGCTGGGAAGAGCAGCAGTGAACGACTCCCCACGA
GTGCACATGTGCAAGCTGCAGTGGCTAAACTGGCTGAGATACATCACCTA
TATCTGGGCATTGACGCACCTAGCCCAATAAATATCCCCGATGCCCAGCG
CCAGCGTTTCCTCGCAGCCTACTACGTCCACGTTGGTAATAGTGGGGCTA
ATCCGGAGCTCGAGCGACTGCGACGCCTGGCCAAGCAGCTGGAGGAGATG
AAGCGGGAGGTTTTGGCACTACTGGAACGAGATAACTATTCCCGATTTAA
GGTAGGAAAGAAAGACGAAGGCCCGTCAGCTGCGCGAAAAGACCGCGCAT
GGAATTTCAAGCTTATTTATGAGCGCGACTTTGACTCTGACCTCCTACCC
TTTCCTCATCCCCACAGAACACAGTTGCATTTCCCCAGCTCCTTGCTAGC
CTGGCGGCGCACCTGCCCACGGAGCCAGCGGTGCCCAGTCTAGCGTAACT
CAACAATGGCGGTAGTGATAACACTAGCCCCGCAGCAACCTGTCAAAAGC
CAAGAAAGCGGTGTTTGAGACCTCTTTTGGCAGTAGCAGCACCAGCAGTA
CCAGCAACAGCGCGAAGGCCGAAAAATTGTTAAGTAGTGTGTGAGAAGAT
GGGAATCAAGCAACAAGGTAAATATTCAACATTATGTTGCCAGGTTAATC
ATTCCACGTTTCATCGTACATTTTTACTATTTGGGGCTATCGAACAATTT
TGCGACTCAAATACCCCCACCGCAAAAGTAAGGGTGGAAGAAGTGAGGAG
ATTTTTCGAGATTTCTGATTTGCCAACTTTGACAGTGCTGGGGAATTTCA
AGCAGCCTTTCTGCAAGAGAAACTATCATGTGGAGGAATAAAGAAGCACT
GTTTGGTGAGGCAACATGTGAACGGGGGATCTAGAATTACCTTGATTGAT
ATCTCAAATGAGAAGCTATTTTAGGAGGCTTTCCCGCAAGCCGCGAAGTT
TAACGACCACAGTAAAGGCCTGACACCATCCGGGGCCACACTCACCAAGG
TTTCACTTTGTGACACTATAAAGGCTAAGGGGAGGTACAGTACAAGTATA
AAAATTCAATTGACGGTTGCATATAATTTTAGAAAGGATAAAAATGTCGA
TCGGGAGAAGTGCAAATGGGATTTGGCCTTGCAAAGGGAGACAGAGCTTT
TATTTCAAGGCAGACCGAAGCATCGAACTTTCTGATTTCATAATGGTCAA
TGACGGGCACCCATGTGTCAGAGTTATACAAGCCCCGTTATTCTTATGTT
CACAAGACTTAAGCGCCCTGCCCATGATGGTGGGATGCCTTACACAGTAA
AGTTTCAGCCTGTTTTCGGCACGTGCCATATAATAAGTACTTCCCCGGAG
GTTGTAAGAGCACCGATATAGTGATACCCCCAGCAAGTACGTTGCGTGCC
ATCAACAAATGACAGAGAAAACTTCCTATTATGCCAGGGCCGCAAGGCTA
ATCTTGGGACGAAAGAAAAAAAGCTAGCACCCCAGTAAGCAGCAT
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Coding sequence (CDS) from alignment at chr14:466682..470226-

>NO14G01480.1 ID=NO14G01480.1|Name=NO14G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr14:466682..470226- (Nannochloropsis oceanica)
ATGGGCAACGGGGCGAGTAGCGTCATGAAAGCCACGGGCGGTGGCGTCCT
GTCGCAAGCTAGCTGCCTGGGTGGGGAGAACTTCCAGACCAAATTGAGCA
TGCTCAAAGAGACACCCTTGGGCAAGGTCTTGTCTGAGACTGACCTTGCT
TATTTCTCTTCATTTTTTAGTCTCGAGACCTTGGTTCCACATTGCCACGT
GCCAATGTGTGCAGGGGAGTTGCTGGTCGTGGGGGAGGGAGAAGTCCAAG
TGTACGTCATCCAAGCCGGCCTCGATGCCAAGACAAAAGAGCAAAGTTTT
GTCTTATGTACCAAGCGTAAAGGTGATCTGATTTGGGTTCCCAGTGTGAC
GCGTCTGGCCAAGCAAAAGTCCTCTTCGGATGATGGCAGCAGCGGCGCAA
ACTACTCTCTACCGGGTGCAGTCGTCGAGCAGGGCGCGGGTGTAATGATT
ACCAACACTACCACGGACATCTCATTCAAAAATTCCATCTCAGGCAAGCA
CAAAGAATTGCACAACATCATGGATACTACATACATTGACTCGGGTGCAG
GTGCAAGGACAAAGAACACCACCAACAGCAACACGGAAGTAGAACTTAGG
AAGTCCCATTCAGGCAAGCACAAAGACTTGTACAACATCATGGATACTAC
GTATATTGATTCCCTCTACGGTGCCATCCTGCTCAAGCTTGACCGTGGAC
GGTATGAGGAATTAACATCCGGTATCATCGAAGAAGATGATGAGCACGTC
CCCGCTCGCCTCGACCTGAAAGCGCTCCGCCGCGTTATTGACTGCAATAT
GGAGGACTATCTCCGCAAGGTGCCTTTATTTCGGGATATATCGGCGGCCA
AGCTTGCCGTGCTTGGAGAGATGTGCAACTATGAGTTCATCAAGACGGGC
CACCGAGTGTGCTCGGAGGGCGATGCCGGCAACGAGATATTTATCGTCTT
GGACGGCCACCTCGATGTCTTCACCAGTGGCAACGGTGAAGTGCTGCCTT
TGGCGACGCTGGGTCCAGGCGACTATTTTGGGGAGCTGGCTGCCCTCATC
CGTATCAAGCGCATCGCTACTGTCCTCTCCACAGAGGATACGTTGCTCGC
TTCCATCAAACGTCACGATTTCCGCTCTTTCATGACCATCATGCCCGACG
TGCGCACCGCCATGGACAAGGTCGTCAAAGAGCACCTCCTCTACAAATAT
GCTAAGATTGGCAACCGCTTCTTTCCCACAACCCCCCCCCTACAACTCTT
AACTCTGTATCGTCCTCGTCATCATCATTATCTTCCTCCTCCACCTCCCC
TTCCCCCTACTTCTCCACCCTCTCATCCTTACTGTCCCCAACCGAAATCA
ACAACCGACGCATGGCCTTATACAATCTATGTGAGGTAG
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Synonyms
Publications