NO14G01470.3, NO14G01470.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01470.3
Unique NameNO14G01470.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1130
Alignment locationchr14:465386..466667 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:465386..466667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01470.3 vs.
Match: EWM24637.1 (Transport protein particle (TRAPP) component [Nannochloropsis gaditana])

HSP 1 Score: 279.6 bits (714), Expect = 7.700e-72
Identity = 150/172 (87.21%), Postives = 157/172 (91.28%), Query Frame = 0 
Query:   29 MTDGKRGTSSGVGGPRVLSILDRPLAAKKGSGGGGSGGEVSLSAFSFLFSEMVQYYQSRVLSIADLERKLEEAGYGVGHRMLELLALRERQYRRETKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNAFVSAPADISQLNCAAYIAGIISGVLNGASF 201
            MT+ KR   SG GG R+L+ILDRPLA K G G GGS  EVSLSAFSFLFSEMVQYYQ+RVLSIADLERKLEEAGYGVGHR+LELLA RE+QYRRE KLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITN FVSAPADISQLNCAAYIAGIISGVLNGAS+
Sbjct:    1 MTESKRNAGSGGGGIRMLNILDRPLATK-GRGVGGS--EVSLSAFSFLFSEMVQYYQNRVLSIADLERKLEEAGYGVGHRVLELLAFREKQYRREIKLIGVLQFVSSTVWKALFNKVADSLERSTENEDEYMIHEREPITNVFVSAPADISQLNCAAYIAGIISGVLNGASY 169
The following BLAST results are available for this feature:
BLAST of NO14G01470.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24637.17.700e-7287.21Transport protein particle (TRAPP) component [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01470NO14G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01470.3NO14G01470.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01470.3.cds1NO14G01470.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01470.3.cds2NO14G01470.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01470.3 ID=NO14G01470.3|Name=NO14G01470.3|organism=Nannochloropsis oceanica|type=mRNA|length=1130bp
GCAATTTGGGGTCAATGATGATGCACCGACACCGAGACCGAGACAAAGCC
ACTTCACATCCCTCAAACACTGTCCACATCCATATGAGCTTGTTACAGAT
GACAGACGGCAAACGAGGTACATCTTCGGGGGTGGGGGGCCCACGGGTGC
TCAGTATTCTCGATCGTCCTCTTGCTGCCAAGAAGGGGAGTGGAGGTGGT
GGGAGTGGGGGAGAAGTGAGTCTCAGTGCGTTCAGCTTCCTGTTTTCCGA
AATGGTGCAGTACTACCAGAGCCGCGTCCTGAGCATCGCAGACTTGGAGC
GCAAGTTGGAAGAGGCTGGATATGGCGTGGGTCACCGGATGCTAGAGCTG
CTGGCTCTCCGAGAACGACAGTACAGGCGTGAAACCAAGCTGATAGGGGT
GCTACAGTTCGTGTCTTCGACAGTGTGGAAGGCCCTCTTTAACAAGGTGG
CGGACTCGCTCGAGCGGTCTACAGAAAACGAGGACGAGTACATGATACAT
GAGCGGGAACCAATTACCAATGCTTTTGTGTCGGCCCCAGCTGACATAAG
TCAATTGAATTGTGCAGCTTACATTGCGGGCATCATCTCCGGCGTCCTGA
ACGGCGCATCATTCGTAAGTCTGCACTGGGCGGTAAACTAGTTGGGAAGG
CCTCTGTGCTTGGAGAAAGAGTTTGTCTGTATTGCCAGGATAATTCTGGC
TTCGCAAATGCGGACAAAGGGCCTGGGGAGGACTATTTTACTACACACTG
GAGGGCGTATGTATGTATCAGTTTCTTTCTTTCGGAGTCTTTCTTTTATG
TGTTCTCATGGCGTACTTATAGCCTACAAGAAGCTGATTCGCCCATGTTC
ATCCCCCTTCTCCTCTCACATGATCTCTCATTTCACAGCCTGCTGGGGTG
ACGGCCCATCACGTGGCGATTGGGGATGGGCAGCGAGATAAGACTGTATT
TCTCATCAAGTTTCGACAGGACGTTTTGCGGAGAGAAGCTGCGTTATCTG
CTTGACAGTGAATCGTCTGAGGCAGTGAAAGCCTCGTGATCGAAGTTTTA
AAGGAAAGAAAAAAGGCTTGTGCAGAGACTCGGAGATGTTGGCCGCGACA
GGCCTAATAATTATCCGCTTTTTGGTTGAG
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protein sequence of NO14G01470.3

>NO14G01470.3-protein ID=NO14G01470.3-protein|Name=NO14G01470.3|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MMMHRHRDRDKATSHPSNTVHIHMSLLQMTDGKRGTSSGVGGPRVLSILD
RPLAAKKGSGGGGSGGEVSLSAFSFLFSEMVQYYQSRVLSIADLERKLEE
AGYGVGHRMLELLALRERQYRRETKLIGVLQFVSSTVWKALFNKVADSLE
RSTENEDEYMIHEREPITNAFVSAPADISQLNCAAYIAGIISGVLNGASF
VSLHWAVN*
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mRNA from alignment at chr14:465386..466667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01470.3 ID=NO14G01470.3|Name=NO14G01470.3|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp|location=Sequence derived from alignment at chr14:465386..466667- (Nannochloropsis oceanica)
GCAATTTGGGGTCAATGATGATGCACCGACACCGAGACCGAGACAAAGCC
ACTTCACATCCCTCAAACACTGTCCACATCCATATGAGCTTGTTACAGAT
GACAGACGGCAAACGAGGTACATCTTCGGGGGTGGGGGGCCCACGGGTGC
TCAGTATTCTCGATCGTCCTCTTGCTGCCAAGAAGGGGAGTGGAGGTGGT
GGGAGTGGGGGAGAAGTGAGTCTCAGTGCGTTCAGCTTCCTGTTTTCCGA
AATGGTGCAGTACTACCAGAGCCGCGTCCTGAGCATCGCAGACTTGGAGC
GCAAGTAAGTAATGAGGTGGACAGGCTCTGCGCGTGATCTCGAGGTGTGC
GCGGCTCAATCCATTACAATTCTCTTCATCCATCGAGCATGATGCCCTTC
AGCCATGACTCAATCTCCTCTCCACTGTCAACGCCACGTCATCCGTCCCG
TCACAGGTTGGAAGAGGCTGGATATGGCGTGGGTCACCGGATGCTAGAGC
TGCTGGCTCTCCGAGAACGACAGTACAGGCGTGAAACCAAGCTGATAGGG
GTGCTACAGTTCGTGTCTTCGACAGTGTGGAAGGCCCTCTTTAACAAGGT
GGCGGACTCGCTCGAGCGGTCTACAGAAAACGAGGACGAGTACATGATAC
ATGAGCGGGAACCAATTACCAATGCTTTTGTGTCGGCCCCAGCTGACATA
AGTCAATTGAATTGTGCAGCTTACATTGCGGGCATCATCTCCGGCGTCCT
GAACGGCGCATCATTCGTAAGTCTGCACTGGGCGGTAAACTAGTTGGGAA
GGCCTCTGTGCTTGGAGAAAGAGTTTGTCTGTATTGCCAGGATAATTCTG
GCTTCGCAAATGCGGACAAAGGGCCTGGGGAGGACTATTTTACTACACAC
TGGAGGGCGTATGTATGTATCAGTTTCTTTCTTTCGGAGTCTTTCTTTTA
TGTGTTCTCATGGCGTACTTATAGCCTACAAGAAGCTGATTCGCCCATGT
TCATCCCCCTTCTCCTCTCACATGATCTCTCATTTCACAGCCTGCTGGGG
TGACGGCCCATCACGTGGCGATTGGGGATGGGCAGCGAGATAAGACTGTA
TTTCTCATCAAGTTTCGACAGGACGTTTTGCGGAGAGAAGCTGCGTTATC
TGCTTGACAGTGAATCGTCTGAGGCAGTGAAAGCCTCGTGATCGAAGTTT
TAAAGGAAAGAAAAAAGGCTTGTGCAGAGACTCGGAGATGTTGGCCGCGA
CAGGCCTAATAATTATCCGCTTTTTGGTTGAG
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Coding sequence (CDS) from alignment at chr14:465386..466667-

>NO14G01470.3 ID=NO14G01470.3|Name=NO14G01470.3|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at chr14:465386..466667- (Nannochloropsis oceanica)
ATGATGATGCACCGACACCGAGACCGAGACAAAGCCACTTCACATCCCTC
AAACACTGTCCACATCCATATGAGCTTGTTACAGATGACAGACGGCAAAC
GAGGTACATCTTCGGGGGTGGGGGGCCCACGGGTGCTCAGTATTCTCGAT
CGTCCTCTTGCTGCCAAGAAGGGGAGTGGAGGTGGTGGGAGTGGGGGAGA
AGTGAGTCTCAGTGCGTTCAGCTTCCTGTTTTCCGAAATGGTGCAGTACT
ACCAGAGCCGCGTCCTGAGCATCGCAGACTTGGAGCGCAAGTTGGAAGAG
GCTGGATATGGCGTGGGTCACCGGATGCTAGAGCTGCTGGCTCTCCGAGA
ACGACAGTACAGGCGTGAAACCAAGCTGATAGGGGTGCTACAGTTCGTGT
CTTCGACAGTGTGGAAGGCCCTCTTTAACAAGGTGGCGGACTCGCTCGAG
CGGTCTACAGAAAACGAGGACGAGTACATGATACATGAGCGGGAACCAAT
TACCAATGCTTTTGTGTCGGCCCCAGCTGACATAAGTCAATTGAATTGTG
CAGCTTACATTGCGGGCATCATCTCCGGCGTCCTGAACGGCGCATCATTC
GTAAGTCTGCACTGGGCGGTAAACTAG
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Synonyms
Publications