NO14G01430.1, NO14G01430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01430.1
Unique NameNO14G01430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1322
Alignment locationchr14:455561..456882 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:455561..456882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01430.1 vs.
Match: EWM24670.1 (Plastid lipid-associated protein/fibrillin conserved domain protein [Nannochloropsis gaditana])

HSP 1 Score: 361.3 bits (926), Expect = 3.100e-96
Identity = 209/323 (64.71%), Postives = 245/323 (75.85%), Query Frame = 0 
Query:    6 LLVACCLASPTQLGAFVPRPSKQGAGATHTIASQNRGGTYFSSSSSSSSGGSTSRSHYGPRSSKARSNRRRRPSHLASTATVIDGPSDVDDTQ-SNSASVVDDENLEDTLNVASDPI--YGGSPKEELINLVTGGFLDSSSPMKRASVNELLLRLEALNPTPIPAYSPLLNGAWEFLWTGGISPGVLGLQLASRLSSYASGAVELGETTLTISRAQPRVEVKTSIKVFGRENAITIRTNLEPATELRLDETYTEASMGSLRVPFPDQKQLFRRPLFISYLDNDLLVVRDSFGAPDVLVRKDKAFVSNTGVPSATDDDTSPGAG 326
            LLVACC   P Q  +F+PRPSKQ     HT  +QN      SS   S  G S+S                R  + L+ST +  DG SDV+ T  S    + + + + + +NV +  +   G   K+ELI+LV+ G LD SSPMKRASVNELLLRLEALNPTP+PAYS LLNGAWEFLWTGGISPG+LGLQLASRLS+YASGAVE+GET LTISRAQPRVEV+TS+KVFGREN I IRT LEPA+ LRL+ETYTEASMG+LRVPFPDQ+Q+F+RPLF+SYLD+DLLVVRDSFGAPD+L+RKDKAF+SNTGVPSATDDDTSPGAG
Sbjct:   10 LLVACCFI-PVQ--SFMPRPSKQVNCCPHT--AQNMKDVGCSSWVDSRVGTSSSNGRCS-----------RGSTSLSSTISTADGTSDVESTAVSKRTGIKESDMIGNGVNVGAAAMEDVGRGAKDELISLVSEGMLDFSSPMKRASVNELLLRLEALNPTPMPAYSSLLNGAWEFLWTGGISPGILGLQLASRLSTYASGAVEVGETVLTISRAQPRVEVQTSLKVFGRENRINIRTRLEPASGLRLEETYTEASMGNLRVPFPDQEQIFKRPLFVSYLDDDLLVVRDSFGAPDILIRKDKAFLSNTGVPSATDDDTSPGAG 316
The following BLAST results are available for this feature:
BLAST of NO14G01430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24670.13.100e-9664.71Plastid lipid-associated protein/fibrillin conserv... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01430NO14G01430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01430.1NO14G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01430.1.cds1NO14G01430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01430.1 ID=NO14G01430.1|Name=NO14G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp
ACAGACCACAGCATTGTCTGGCGGTGTCACAAGCGGAACCAGCCGAAGCG
ATGATCCCGAAGTTGTTGCTCGTGGCATGCTGTCTCGCCTCGCCTACCCA
ACTTGGGGCCTTCGTTCCCAGGCCTAGTAAGCAAGGTGCAGGTGCCACGC
ACACTATCGCAAGCCAAAATCGGGGTGGCACATATTTTAGCAGCAGCAGC
AGCAGCAGCAGCGGCGGTAGTACCAGCCGCAGCCATTACGGGCCGCGTTC
GAGCAAGGCTCGCAGCAACCGCCGCCGTCGCCCTTCCCACCTCGCTTCAA
CTGCGACCGTGATCGACGGGCCTTCAGACGTAGATGACACGCAAAGCAAC
AGTGCCTCTGTTGTAGACGACGAAAACCTTGAGGATACATTGAATGTTGC
ATCTGATCCTATTTACGGGGGTAGCCCCAAGGAAGAGCTGATCAACCTCG
TCACTGGCGGCTTCCTGGATTCATCTTCTCCAATGAAGCGCGCGTCAGTC
AACGAATTGTTGCTGCGCCTAGAAGCTCTAAATCCGACGCCGATACCCGC
ATACTCGCCTTTGCTTAATGGGGCATGGGAGTTCTTGTGGACGGGTGGCA
TATCACCCGGTGTTCTGGGTTTGCAACTTGCATCGAGATTGTCTAGCTAC
GCTAGCGGTGCAGTCGAGTTAGGGGAAACCACGCTCACGATCAGCCGGGC
CCAACCAAGAGTAGAGGTGAAGACGTCGATCAAAGTGTTTGGAAGGGAGA
ACGCAATTACGATTCGCACGAACCTGGAACCGGCAACAGAATTGCGCCTG
GATGAGACGTACACGGAGGCCAGCATGGGCAGTCTCCGGGTACCCTTTCC
TGACCAAAAGCAACTCTTTCGACGCCCTCTTTTTATTTCGTACTTGGATA
ATGACCTGCTTGTGGTACGTGATAGTTTTGGTGCGCCCGACGTGTTAGTA
AGGAAGGACAAGGCCTTCGTGAGCAACACGGGCGTGCCGTCTGCGACTGA
CGACGATACGTCTCCTGGTGCAGGGTGAAGGAGCGAGGGATTGCAAATTC
AAACGAAAGAGAGGGAGAGCCATACCATGAGACGGCGAGATTTTTTTCAC
AAGGATAACAGAAATCGAGGCTGATGCCACATGCATTTTTATTTCTCACT
TGGAGGGAAATAAGCGAGAAGGACACAGTTTATCGTTTATGAGGCAGAGC
AGGCCATGGCAATGCGGTCCGGAACTGGAAAGAAGGTCTACAAGTTAGAA
AACAGGCATCAGAGGTTCATTTCCAAACCAAAAAAAACACTCGAAAGAAT
AATGCGCCCGTGCTCGATCCGA
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protein sequence of NO14G01430.1

>NO14G01430.1-protein ID=NO14G01430.1-protein|Name=NO14G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MIPKLLLVACCLASPTQLGAFVPRPSKQGAGATHTIASQNRGGTYFSSSS
SSSSGGSTSRSHYGPRSSKARSNRRRRPSHLASTATVIDGPSDVDDTQSN
SASVVDDENLEDTLNVASDPIYGGSPKEELINLVTGGFLDSSSPMKRASV
NELLLRLEALNPTPIPAYSPLLNGAWEFLWTGGISPGVLGLQLASRLSSY
ASGAVELGETTLTISRAQPRVEVKTSIKVFGRENAITIRTNLEPATELRL
DETYTEASMGSLRVPFPDQKQLFRRPLFISYLDNDLLVVRDSFGAPDVLV
RKDKAFVSNTGVPSATDDDTSPGAG*
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mRNA from alignment at chr14:455561..456882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01430.1 ID=NO14G01430.1|Name=NO14G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp|location=Sequence derived from alignment at chr14:455561..456882- (Nannochloropsis oceanica)
ACAGACCACAGCATTGTCTGGCGGTGTCACAAGCGGAACCAGCCGAAGCG
ATGATCCCGAAGTTGTTGCTCGTGGCATGCTGTCTCGCCTCGCCTACCCA
ACTTGGGGCCTTCGTTCCCAGGCCTAGTAAGCAAGGTGCAGGTGCCACGC
ACACTATCGCAAGCCAAAATCGGGGTGGCACATATTTTAGCAGCAGCAGC
AGCAGCAGCAGCGGCGGTAGTACCAGCCGCAGCCATTACGGGCCGCGTTC
GAGCAAGGCTCGCAGCAACCGCCGCCGTCGCCCTTCCCACCTCGCTTCAA
CTGCGACCGTGATCGACGGGCCTTCAGACGTAGATGACACGCAAAGCAAC
AGTGCCTCTGTTGTAGACGACGAAAACCTTGAGGATACATTGAATGTTGC
ATCTGATCCTATTTACGGGGGTAGCCCCAAGGAAGAGCTGATCAACCTCG
TCACTGGCGGCTTCCTGGATTCATCTTCTCCAATGAAGCGCGCGTCAGTC
AACGAATTGTTGCTGCGCCTAGAAGCTCTAAATCCGACGCCGATACCCGC
ATACTCGCCTTTGCTTAATGGGGCATGGGAGTTCTTGTGGACGGGTGGCA
TATCACCCGGTGTTCTGGGTTTGCAACTTGCATCGAGATTGTCTAGCTAC
GCTAGCGGTGCAGTCGAGTTAGGGGAAACCACGCTCACGATCAGCCGGGC
CCAACCAAGAGTAGAGGTGAAGACGTCGATCAAAGTGTTTGGAAGGGAGA
ACGCAATTACGATTCGCACGAACCTGGAACCGGCAACAGAATTGCGCCTG
GATGAGACGTACACGGAGGCCAGCATGGGCAGTCTCCGGGTACCCTTTCC
TGACCAAAAGCAACTCTTTCGACGCCCTCTTTTTATTTCGTACTTGGATA
ATGACCTGCTTGTGGTACGTGATAGTTTTGGTGCGCCCGACGTGTTAGTA
AGGAAGGACAAGGCCTTCGTGAGCAACACGGGCGTGCCGTCTGCGACTGA
CGACGATACGTCTCCTGGTGCAGGGTGAAGGAGCGAGGGATTGCAAATTC
AAACGAAAGAGAGGGAGAGCCATACCATGAGACGGCGAGATTTTTTTCAC
AAGGATAACAGAAATCGAGGCTGATGCCACATGCATTTTTATTTCTCACT
TGGAGGGAAATAAGCGAGAAGGACACAGTTTATCGTTTATGAGGCAGAGC
AGGCCATGGCAATGCGGTCCGGAACTGGAAAGAAGGTCTACAAGTTAGAA
AACAGGCATCAGAGGTTCATTTCCAAACCAAAAAAAACACTCGAAAGAAT
AATGCGCCCGTGCTCGATCCGA
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Coding sequence (CDS) from alignment at chr14:455561..456882-

>NO14G01430.1 ID=NO14G01430.1|Name=NO14G01430.1|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at chr14:455561..456882- (Nannochloropsis oceanica)
ATGATCCCGAAGTTGTTGCTCGTGGCATGCTGTCTCGCCTCGCCTACCCA
ACTTGGGGCCTTCGTTCCCAGGCCTAGTAAGCAAGGTGCAGGTGCCACGC
ACACTATCGCAAGCCAAAATCGGGGTGGCACATATTTTAGCAGCAGCAGC
AGCAGCAGCAGCGGCGGTAGTACCAGCCGCAGCCATTACGGGCCGCGTTC
GAGCAAGGCTCGCAGCAACCGCCGCCGTCGCCCTTCCCACCTCGCTTCAA
CTGCGACCGTGATCGACGGGCCTTCAGACGTAGATGACACGCAAAGCAAC
AGTGCCTCTGTTGTAGACGACGAAAACCTTGAGGATACATTGAATGTTGC
ATCTGATCCTATTTACGGGGGTAGCCCCAAGGAAGAGCTGATCAACCTCG
TCACTGGCGGCTTCCTGGATTCATCTTCTCCAATGAAGCGCGCGTCAGTC
AACGAATTGTTGCTGCGCCTAGAAGCTCTAAATCCGACGCCGATACCCGC
ATACTCGCCTTTGCTTAATGGGGCATGGGAGTTCTTGTGGACGGGTGGCA
TATCACCCGGTGTTCTGGGTTTGCAACTTGCATCGAGATTGTCTAGCTAC
GCTAGCGGTGCAGTCGAGTTAGGGGAAACCACGCTCACGATCAGCCGGGC
CCAACCAAGAGTAGAGGTGAAGACGTCGATCAAAGTGTTTGGAAGGGAGA
ACGCAATTACGATTCGCACGAACCTGGAACCGGCAACAGAATTGCGCCTG
GATGAGACGTACACGGAGGCCAGCATGGGCAGTCTCCGGGTACCCTTTCC
TGACCAAAAGCAACTCTTTCGACGCCCTCTTTTTATTTCGTACTTGGATA
ATGACCTGCTTGTGGTACGTGATAGTTTTGGTGCGCCCGACGTGTTAGTA
AGGAAGGACAAGGCCTTCGTGAGCAACACGGGCGTGCCGTCTGCGACTGA
CGACGATACGTCTCCTGGTGCAGGGTGA
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Synonyms
Publications