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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:446603..449715 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G01400.1 vs.
Match: EWM24683.1 (ser thr kinase [Nannochloropsis gaditana]) HSP 1 Score: 686.8 bits (1771), Expect = 6.100e-194 Identity = 400/603 (66.33%), Postives = 445/603 (73.80%), Query Frame = 0
Query: 16 PPPSLGSRTVSLPSVTPSLHLQR-TMSAASDRSSCLSLSLTLTDEEIPGAASTIEESFDFNDELDNVFLRGSGAHNRVGLAIGARGLAMRDHPKMFTVAYEDLEIGAVIGKGATGAVLEAVHKPTGTRLALKVINMFDKSRRSQLIREICTLYDAACPSLISFYGAFYREGCITLALEMMDGGALANLIAQLGPIPERPLANMVFQILWALAYLKHDKRVHRDVKPSNLLINSHGEVKVSDFGLSAELQSSLAMCGTFVGTFKYMSPERIRNQPYDYASDIWSLGLTLIECATGRYPYLQSGMAGEGDEEEDKDGRVDPAAA------TTAAAAATSLKKLRNKSRSRSSSCIEMIQAITESDPPTLPAGPKFSPEFHAFLDNLLQKDPRRRLPPEILLGAPWLRQSGAVSLAEAVRNTRHWIHHEAVPGRKDYGSDNLVRTGGTEEERREGGSGNRGGRSTVSCSCSSSSSASNSRRSNSAAAAPA--AAAAATVHTSVGAGSVICSAPPMPMPGQSTVSGGGAPSLSSLSSSSLRQGMRSTIG-GAVGGGGRVVALAPPLPLRARSSSSLNPSSSSLSFS-SSHQY--QRHNAPPLRSFST 606
PPP L R SL SV P+ S S R SCLSLSL+LTD E P A+S +EESFDFNDELDNVFLRG NRVGLAIGA GLAMRDHPK F VAYEDLEIG VIGKG+TGAVLEAVHKPTGTRLALKVIN+FDKSRRSQLIREI TLYDAACPSL++FYGAFYREGCITLALEMMDGGALANL+AQLGPIPER LANMVFQILWALAYLKHDKRVHRD+KPSNLLINSHGEVKVSDFGLSAELQSSLAMCGTFVGTFKYMSPERIRN PYDYASD+WSLGLTLIECATGRYPYLQ G+ G EEE+ + VD A A+A S K + RSR+ SCI+MIQAITES+PPTLP G +FS +FH FLDN+LQKDPRRRLPPEILLGAPWLRQ GAVSLA AVRNT++WIH+EAVPGR N V+ GG + E RGGR+ A +R +++AP+ ++ S AGS + P+P + G+P+LSS S S L ST ++ GGR LA PLPL ARSSS + PS SS SFS S+H Y QR N PP+RSFST
Sbjct: 13 PPPQLPVRAASLSSVAPNSRPGNPAASNLSVRPSCLSLSLSLTDVETPEASSNVEESFDFNDELDNVFLRGGCRQNRVGLAIGAGGLAMRDHPKTFRVAYEDLEIGKVIGKGSTGAVLEAVHKPTGTRLALKVINVFDKSRRSQLIREIRTLYDAACPSLVAFYGAFYREGCITLALEMMDGGALANLVAQLGPIPERALANMVFQILWALAYLKHDKRVHRDIKPSNLLINSHGEVKVSDFGLSAELQSSLAMCGTFVGTFKYMSPERIRNDPYDYASDVWSLGLTLIECATGRYPYLQ-GLDDAGMEEEEMEA-VDGAGGGPGGRRGAGVASAPSASKGGRRRRSRAHSCIDMIQAITESEPPTLPPGTEFSRDFHGFLDNMLQKDPRRRLPPEILLGAPWLRQFGAVSLAAAVRNTQYWIHNEAVPGR------NRVKAGGPHSRQDE----RRGGRA------EDERRAERGQRGRESSSAPSRNRGLVNCLNKSACAGSFHAAGAPLPASSAPPMPSMGSPALSSASLSPLAPSPLSTDSCKSMNSGGRQTGLALPLPLLARSSSLVPPSPSSSSFSTSAHSYHPQRKNGPPMRSFST 597
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G01400.1 ID=NO14G01400.1|Name=NO14G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=3113bp CGGCACTACGGCTCGTTGACCTTCCATACCCCATTTCAATACACACACGC ACTTCCTCGTCCTCCGCGCACTCTTTTTTCCCTGCTTCTTGCGAAGCCGC CCACGCGCAGGGCATATAAGCATTGATGGGGAATAAAGACTTTCTTGTTC CGCTCGCTGGTCCCCTCGATGACGGATTTCATCGCCCACTTTTGTTGGCC TCCCGCAGCACATAACTCACAGTCGACGGGGCAGCATCTTTGGATCCTCA TGTTTGCACGTCACGCACTCACATTAGACGACCACTGGGTCTCCCGAATA AGAAGTTCTGTGCCAAAGCTGTGGCAGCGCAGGCGCCCATAGTCTGGGAA GGGGGAAGATGCTGTTGGGGGCTTGCCACTTGCATCGCATGTTGATTTGA TGGGCAGAGCAGCAGAATCAAGCTGCAGAACACATCTTGCCAGTGCACCG TACTCACGCGTTCATTTTTCTCACTCCTCCATATCTCCAGGGCTGGTTTC TAGCACGTGTTGAGGCTCTGGTTTGATAGGCAAGGGCCAAGGCGGCAAGC AATACGCACACAGTCCCGCCTCCGCCAAGAACAAGTAGCTTTGGGAACGT TGGCGTGGCTGCCTCCTTTGCGTTGCACGTCGTCGTCCTATAGGACGGCT GACAGCAGCGCTTGGTCCGACAGTGGTGCCGACGCCTCGTCTAACTCCCT GTCATCCGTGTCTCCTTTGAGCACGACGACCGCCAACGGGGCCCTCGCGC TCATGTCTCCTCCGGGCACCCGCGACAACCACCACCTATCCATGCCACCC CCACCATCACTGGGGTCTCGCACAGTGAGCCTGCCTTCGGTTACCCCGTC GTTACACCTTCAACGCACCATGTCCGCCGCCTCAGACCGGTCTTCATGCT TGTCGCTCTCCCTTACCCTCACGGACGAGGAAATCCCCGGCGCCGCCTCG ACCATCGAAGAGTCCTTTGATTTCAACGACGAGCTAGACAACGTTTTTTT GCGCGGAAGCGGGGCACACAATCGGGTCGGGCTTGCGATTGGAGCCCGTG GATTGGCCATGCGAGATCATCCCAAGATGTTCACTGTGGCTTATGAAGAC CTGGAAATTGGCGCTGTTATCGGCAAAGGCGCGACTGGCGCAGTACTGGA AGCCGTGCACAAACCCACGGGGACCAGGTTGGCTTTAAAGGTGATTAACA TGTTTGATAAATCTCGTCGTTCGCAGTTGATACGGGAGATATGCACGTTG TATGACGCCGCCTGCCCGTCCCTCATCTCTTTTTATGGAGCCTTCTATCG GGAAGGCTGCATCACTCTTGCCTTGGAGATGATGGACGGCGGCGCTCTCG CGAACCTGATAGCCCAACTGGGCCCCATCCCCGAACGCCCTCTCGCTAAC ATGGTCTTTCAAATCCTTTGGGCGCTCGCGTACCTGAAACACGACAAGCG GGTGCATCGCGACGTCAAGCCCTCCAACCTCCTGATCAACAGTCACGGTG AGGTCAAAGTTTCAGATTTCGGCCTTTCTGCCGAATTGCAGAGCTCCCTG GCGATGTGCGGGACTTTTGTGGGCACCTTTAAATATATGTCCCCGGAACG GATTCGCAACCAGCCATATGATTATGCCTCGGATATCTGGAGCCTGGGGT TGACCCTCATAGAGTGCGCTACGGGCCGCTATCCGTACTTGCAGTCCGGC ATGGCGGGGGAGGGAGACGAGGAGGAGGACAAGGATGGCAGAGTAGACCC GGCAGCAGCTACAACAGCAGCAGCAGCGGCGACGTCTTTGAAAAAGTTGC GGAATAAAAGCAGAAGCCGGAGTAGCAGTTGTATTGAGATGATTCAAGCG ATAACGGAGAGCGACCCTCCTACCTTACCTGCGGGCCCGAAATTCTCCCC GGAGTTTCATGCGTTCTTGGACAATTTATTGCAGAAGGACCCGAGGCGAC GGCTGCCACCCGAGATTTTACTCGGGGCCCCGTGGCTGAGGCAGTCGGGG GCAGTGTCACTGGCGGAGGCTGTGCGGAATACCAGGCATTGGATTCATCA CGAAGCAGTGCCGGGGAGGAAGGATTATGGAAGTGATAATTTGGTGCGAA CAGGAGGCACTGAGGAAGAGAGAAGGGAGGGAGGCAGTGGTAATAGGGGA GGGCGCAGTACTGTCAGCTGCAGCTGCAGCAGCAGCAGCAGCGCTTCAAA CTCACGAAGAAGTAATAGTGCGGCGGCGGCTCCGGCGGCTGCTGCGGCGG CGACCGTTCATACATCGGTGGGTGCGGGGTCGGTTATCTGCTCCGCGCCA CCCATGCCAATGCCTGGGCAGTCGACCGTCTCTGGAGGAGGAGCTCCAAG CCTATCATCTCTGTCCTCGTCGTCCTTGCGGCAGGGGATGCGCTCTACAA TAGGAGGAGCGGTGGGAGGAGGGGGAAGAGTGGTCGCATTAGCCCCACCG TTACCTCTACGGGCGCGGTCTTCGTCTTCCTTGAATCCCTCCTCATCTTC CCTTTCATTCTCGTCCTCGCACCAATATCAGCGCCACAACGCCCCCCCGC TGCGGTCCTTTTCCACGTGACGGAGGGAGGGAGAGGGAGGAAAGTGATGA CAGGAGGAACACGCAGTCGAGACGTATTGTATGCAAAGAATCGAGCGAGG AGAATAAAGGAGGAGAGAGATGAGACTCAGTCAAACAAAAGTAAGAGATC CCTTGAGTACGGATGTATGCGAGAAATTGTGTGGAAAATGAAATCGAACA CAGAGTAGGGAGTGAAGAAGAGAAAGAGAATGTAAATGTGGCAATGGCCC ACACCGCCTAAATGTGGGTGTATCGATAGACCGGCTAGCCAGGAGTGGGG GGAAAGTTTGTGAAAAAATCAGCTCAGAAGGGAGAATGAATGCAGTGGTA ATTGTGTAAGTTACACGTGAAAAAGGTTTGAGGGAGGAGAGGAGAAATAA CAGAAGGGACAAAAGAGGACCTGCTCTGCCACTGTCAGCAAATCAAATGT AGAAAAAGAAGAAAGCCAATCCAGCACGAAGAACGAGAACAAGGAGGAAA GAGAGCAAGGAAGAAAGAAGGCACGAGCGAAATATGTGTCGGAAAGCGAA GCCAAATTTTCGT back to topprotein sequence of NO14G01400.1 >NO14G01400.1-protein ID=NO14G01400.1-protein|Name=NO14G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp MSPPGTRDNHHLSMPPPPSLGSRTVSLPSVTPSLHLQRTMSAASDRSSCL SLSLTLTDEEIPGAASTIEESFDFNDELDNVFLRGSGAHNRVGLAIGARG LAMRDHPKMFTVAYEDLEIGAVIGKGATGAVLEAVHKPTGTRLALKVINM FDKSRRSQLIREICTLYDAACPSLISFYGAFYREGCITLALEMMDGGALA NLIAQLGPIPERPLANMVFQILWALAYLKHDKRVHRDVKPSNLLINSHGE VKVSDFGLSAELQSSLAMCGTFVGTFKYMSPERIRNQPYDYASDIWSLGL TLIECATGRYPYLQSGMAGEGDEEEDKDGRVDPAAATTAAAAATSLKKLR NKSRSRSSSCIEMIQAITESDPPTLPAGPKFSPEFHAFLDNLLQKDPRRR LPPEILLGAPWLRQSGAVSLAEAVRNTRHWIHHEAVPGRKDYGSDNLVRT GGTEEERREGGSGNRGGRSTVSCSCSSSSSASNSRRSNSAAAAPAAAAAA TVHTSVGAGSVICSAPPMPMPGQSTVSGGGAPSLSSLSSSSLRQGMRSTI GGAVGGGGRVVALAPPLPLRARSSSSLNPSSSSLSFSSSHQYQRHNAPPL RSFST* back to topmRNA from alignment at chr14:446603..449715+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G01400.1 ID=NO14G01400.1|Name=NO14G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=3113bp|location=Sequence derived from alignment at chr14:446603..449715+ (Nannochloropsis oceanica) CGGCACTACGGCTCGTTGACCTTCCATACCCCATTTCAATACACACACGC
ACTTCCTCGTCCTCCGCGCACTCTTTTTTCCCTGCTTCTTGCGAAGCCGC
CCACGCGCAGGGCATATAAGCATTGATGGGGAATAAAGACTTTCTTGTTC
CGCTCGCTGGTCCCCTCGATGACGGATTTCATCGCCCACTTTTGTTGGCC
TCCCGCAGCACATAACTCACAGTCGACGGGGCAGCATCTTTGGATCCTCA
TGTTTGCACGTCACGCACTCACATTAGACGACCACTGGGTCTCCCGAATA
AGAAGTTCTGTGCCAAAGCTGTGGCAGCGCAGGCGCCCATAGTCTGGGAA
GGGGGAAGATGCTGTTGGGGGCTTGCCACTTGCATCGCATGTTGATTTGA
TGGGCAGAGCAGCAGAATCAAGCTGCAGAACACATCTTGCCAGTGCACCG
TACTCACGCGTTCATTTTTCTCACTCCTCCATATCTCCAGGGCTGGTTTC
TAGCACGTGTTGAGGCTCTGGTTTGATAGGCAAGGGCCAAGGCGGCAAGC
AATACGCACACAGTCCCGCCTCCGCCAAGAACAAGTAGCTTTGGGAACGT
TGGCGTGGCTGCCTCCTTTGCGTTGCACGTCGTCGTCCTATAGGACGGCT
GACAGCAGCGCTTGGTCCGACAGTGGTGCCGACGCCTCGTCTAACTCCCT
GTCATCCGTGTCTCCTTTGAGCACGACGACCGCCAACGGGGCCCTCGCGC
TCATGTCTCCTCCGGGCACCCGCGACAACCACCACCTATCCATGCCACCC
CCACCATCACTGGGGTCTCGCACAGTGAGCCTGCCTTCGGTTACCCCGTC
GTTACACCTTCAACGCACCATGTCCGCCGCCTCAGACCGGTCTTCATGCT
TGTCGCTCTCCCTTACCCTCACGGACGAGGAAATCCCCGGCGCCGCCTCG
ACCATCGAAGAGTCCTTTGATTTCAACGACGAGCTAGACAACGTTTTTTT
GCGCGGAAGCGGGGCACACAATCGGGTCGGGCTTGCGATTGGAGCCCGTG
GATTGGCCATGCGAGATCATCCCAAGATGTTCACTGTGGCTTATGAAGAC
CTGGAAATTGGCGCTGTTATCGGCAAAGGCGCGACTGGCGCAGTACTGGA
AGCCGTGCACAAACCCACGGGGACCAGGTTGGCTTTAAAGGTGATTAACA
TGTTTGATAAATCTCGTCGTTCGCAGTTGATACGGGAGATATGCACGTTG
TATGACGCCGCCTGCCCGTCCCTCATCTCTTTTTATGGAGCCTTCTATCG
GGAAGGCTGCATCACTCTTGCCTTGGAGATGATGGACGGCGGCGCTCTCG
CGAACCTGATAGCCCAACTGGGCCCCATCCCCGAACGCCCTCTCGCTAAC
ATGGTCTTTCAAATCCTTTGGGCGCTCGCGTACCTGAAACACGACAAGCG
GGTGCATCGCGACGTCAAGCCCTCCAACCTCCTGATCAACAGTCACGGTG
AGGTCAAAGTTTCAGATTTCGGCCTTTCTGCCGAATTGCAGAGCTCCCTG
GCGATGTGCGGGACTTTTGTGGGCACCTTTAAATATATGTCCCCGGAACG
GATTCGCAACCAGCCATATGATTATGCCTCGGATATCTGGAGCCTGGGGT
TGACCCTCATAGAGTGCGCTACGGGCCGCTATCCGTACTTGCAGTCCGGC
ATGGCGGGGGAGGGAGACGAGGAGGAGGACAAGGATGGCAGAGTAGACCC
GGCAGCAGCTACAACAGCAGCAGCAGCGGCGACGTCTTTGAAAAAGTTGC
GGAATAAAAGCAGAAGCCGGAGTAGCAGTTGTATTGAGATGATTCAAGCG
ATAACGGAGAGCGACCCTCCTACCTTACCTGCGGGCCCGAAATTCTCCCC
GGAGTTTCATGCGTTCTTGGACAATTTATTGCAGAAGGACCCGAGGCGAC
GGCTGCCACCCGAGATTTTACTCGGGGCCCCGTGGCTGAGGCAGTCGGGG
GCAGTGTCACTGGCGGAGGCTGTGCGGAATACCAGGCATTGGATTCATCA
CGAAGCAGTGCCGGGGAGGAAGGATTATGGAAGTGATAATTTGGTGCGAA
CAGGAGGCACTGAGGAAGAGAGAAGGGAGGGAGGCAGTGGTAATAGGGGA
GGGCGCAGTACTGTCAGCTGCAGCTGCAGCAGCAGCAGCAGCGCTTCAAA
CTCACGAAGAAGTAATAGTGCGGCGGCGGCTCCGGCGGCTGCTGCGGCGG
CGACCGTTCATACATCGGTGGGTGCGGGGTCGGTTATCTGCTCCGCGCCA
CCCATGCCAATGCCTGGGCAGTCGACCGTCTCTGGAGGAGGAGCTCCAAG
CCTATCATCTCTGTCCTCGTCGTCCTTGCGGCAGGGGATGCGCTCTACAA
TAGGAGGAGCGGTGGGAGGAGGGGGAAGAGTGGTCGCATTAGCCCCACCG
TTACCTCTACGGGCGCGGTCTTCGTCTTCCTTGAATCCCTCCTCATCTTC
CCTTTCATTCTCGTCCTCGCACCAATATCAGCGCCACAACGCCCCCCCGC
TGCGGTCCTTTTCCACGTGACGGAGGGAGGGAGAGGGAGGAAAGTGATGA
CAGGAGGAACACGCAGTCGAGACGTATTGTATGCAAAGAATCGAGCGAGG
AGAATAAAGGAGGAGAGAGATGAGACTCAGTCAAACAAAAGTAAGAGATC
CCTTGAGTACGGATGTATGCGAGAAATTGTGTGGAAAATGAAATCGAACA
CAGAGTAGGGAGTGAAGAAGAGAAAGAGAATGTAAATGTGGCAATGGCCC
ACACCGCCTAAATGTGGGTGTATCGATAGACCGGCTAGCCAGGAGTGGGG
GGAAAGTTTGTGAAAAAATCAGCTCAGAAGGGAGAATGAATGCAGTGGTA
ATTGTGTAAGTTACACGTGAAAAAGGTTTGAGGGAGGAGAGGAGAAATAA
CAGAAGGGACAAAAGAGGACCTGCTCTGCCACTGTCAGCAAATCAAATGT
AGAAAAAGAAGAAAGCCAATCCAGCACGAAGAACGAGAACAAGGAGGAAA
GAGAGCAAGGAAGAAAGAAGGCACGAGCGAAATATGTGTCGGAAAGCGAA
GCCAAATTTTCGT back to topCoding sequence (CDS) from alignment at chr14:446603..449715+ >NO14G01400.1 ID=NO14G01400.1|Name=NO14G01400.1|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at chr14:446603..449715+ (Nannochloropsis oceanica) ATGTCTCCTCCGGGCACCCGCGACAACCACCACCTATCCATGCCACCCCC ACCATCACTGGGGTCTCGCACAGTGAGCCTGCCTTCGGTTACCCCGTCGT TACACCTTCAACGCACCATGTCCGCCGCCTCAGACCGGTCTTCATGCTTG TCGCTCTCCCTTACCCTCACGGACGAGGAAATCCCCGGCGCCGCCTCGAC CATCGAAGAGTCCTTTGATTTCAACGACGAGCTAGACAACGTTTTTTTGC GCGGAAGCGGGGCACACAATCGGGTCGGGCTTGCGATTGGAGCCCGTGGA TTGGCCATGCGAGATCATCCCAAGATGTTCACTGTGGCTTATGAAGACCT GGAAATTGGCGCTGTTATCGGCAAAGGCGCGACTGGCGCAGTACTGGAAG CCGTGCACAAACCCACGGGGACCAGGTTGGCTTTAAAGGTGATTAACATG TTTGATAAATCTCGTCGTTCGCAGTTGATACGGGAGATATGCACGTTGTA TGACGCCGCCTGCCCGTCCCTCATCTCTTTTTATGGAGCCTTCTATCGGG AAGGCTGCATCACTCTTGCCTTGGAGATGATGGACGGCGGCGCTCTCGCG AACCTGATAGCCCAACTGGGCCCCATCCCCGAACGCCCTCTCGCTAACAT GGTCTTTCAAATCCTTTGGGCGCTCGCGTACCTGAAACACGACAAGCGGG TGCATCGCGACGTCAAGCCCTCCAACCTCCTGATCAACAGTCACGGTGAG GTCAAAGTTTCAGATTTCGGCCTTTCTGCCGAATTGCAGAGCTCCCTGGC GATGTGCGGGACTTTTGTGGGCACCTTTAAATATATGTCCCCGGAACGGA TTCGCAACCAGCCATATGATTATGCCTCGGATATCTGGAGCCTGGGGTTG ACCCTCATAGAGTGCGCTACGGGCCGCTATCCGTACTTGCAGTCCGGCAT GGCGGGGGAGGGAGACGAGGAGGAGGACAAGGATGGCAGAGTAGACCCGG CAGCAGCTACAACAGCAGCAGCAGCGGCGACGTCTTTGAAAAAGTTGCGG AATAAAAGCAGAAGCCGGAGTAGCAGTTGTATTGAGATGATTCAAGCGAT AACGGAGAGCGACCCTCCTACCTTACCTGCGGGCCCGAAATTCTCCCCGG AGTTTCATGCGTTCTTGGACAATTTATTGCAGAAGGACCCGAGGCGACGG CTGCCACCCGAGATTTTACTCGGGGCCCCGTGGCTGAGGCAGTCGGGGGC AGTGTCACTGGCGGAGGCTGTGCGGAATACCAGGCATTGGATTCATCACG AAGCAGTGCCGGGGAGGAAGGATTATGGAAGTGATAATTTGGTGCGAACA GGAGGCACTGAGGAAGAGAGAAGGGAGGGAGGCAGTGGTAATAGGGGAGG GCGCAGTACTGTCAGCTGCAGCTGCAGCAGCAGCAGCAGCGCTTCAAACT CACGAAGAAGTAATAGTGCGGCGGCGGCTCCGGCGGCTGCTGCGGCGGCG ACCGTTCATACATCGGTGGGTGCGGGGTCGGTTATCTGCTCCGCGCCACC CATGCCAATGCCTGGGCAGTCGACCGTCTCTGGAGGAGGAGCTCCAAGCC TATCATCTCTGTCCTCGTCGTCCTTGCGGCAGGGGATGCGCTCTACAATA GGAGGAGCGGTGGGAGGAGGGGGAAGAGTGGTCGCATTAGCCCCACCGTT ACCTCTACGGGCGCGGTCTTCGTCTTCCTTGAATCCCTCCTCATCTTCCC TTTCATTCTCGTCCTCGCACCAATATCAGCGCCACAACGCCCCCCCGCTG CGGTCCTTTTCCACGTGA back to top
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