NO14G01380.1, NO14G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01380.1
Unique NameNO14G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length858
Alignment locationchr14:443128..443985 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:443128..443985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G01380.1 vs.
Match: XP_005856226.1 (4-hydroxybenzoate hexaprenyltransferase [Nannochloropsis gaditana CCMP526]; EKU20135.1 4-hydroxybenzoate hexaprenyltransferase [Nannochloropsis gaditana CCMP526]; EWM24684.1 4-hydroxybenzoate polyprenyl transferase [Nannochloropsis gaditana])

HSP 1 Score: 486.9 bits (1252), Expect = 4.400e-134
Identity = 227/284 (79.93%), Postives = 255/284 (89.79%), Query Frame = 0
Query:    1 MQPYLRLARVDKPIGTYLLLWPGYWGLALAAAPGTLPDWGLLTAVGVGTVVMRSAGCTVNDLWDRDIDKNVERTKNRPITSGEISVTSGVVFLGAQLLAGLGVLVQLNEYSIYLGMASVPLVLTYPLMKRWTNYPQLFLGVTFNWGVLMGWAATHGSCDWPVILPLYTSAVAWTMVYDTLYAHQDKKDDARLGLHSTALTFGEDRTKPILAGFSAVMIGGLLVTGVQADLAWPFNVGTGLTACSLLWQLGTAELNNPVNLAARFESNKWVGGVVFGSIVAGRYF 285
            +QPY+RLAR+DKPIGTYLLLWPG+W LALAAAPG LPDW LL A GVGT+VMRSAGCTVNDLWDRD+DKNV RTK+RPITSGEISV +GV FLG QLLAGLGVL QLNEY+IYLGMASVPLVL YPLMKRWT+YPQLFLG+TFNWG LMGWAATHGSCDWP++LPLY SAVAWT+VYDTLYAHQDK+DD+RLG+ STALTFG+  TKP+L G SA M+GGLL+ G++ADL+W F +GTGLTA  L WQL TA+LN   NL+ARFESNKWVGG+VFGSIVAGRYF
Sbjct:  128 VQPYMRLARLDKPIGTYLLLWPGFWSLALAAAPGALPDWKLLAAFGVGTLVMRSAGCTVNDLWDRDLDKNVARTKHRPITSGEISVQNGVGFLGIQLLAGLGVLTQLNEYTIYLGMASVPLVLAYPLMKRWTDYPQLFLGITFNWGALMGWAATHGSCDWPIVLPLYASAVAWTVVYDTLYAHQDKRDDSRLGIRSTALTFGDSGTKPVLTGLSAAMVGGLLLVGIEADLSWHFYLGTGLTASHLAWQLITADLNCSSNLSARFESNKWVGGLVFGSIVAGRYF 411          
The following BLAST results are available for this feature:
BLAST of NO14G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856226.14.400e-13479.934-hydroxybenzoate hexaprenyltransferase [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01380NO14G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01380.1NO14G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01380.1.cds1NO14G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01380.1 ID=NO14G01380.1|Name=NO14G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGCAACCCTACCTGCGCCTGGCCCGCGTTGACAAACCCATCGGCACCTA
CCTCCTGCTCTGGCCAGGCTACTGGGGTCTTGCTCTTGCAGCAGCGCCGG
GAACTTTACCGGATTGGGGACTTTTGACGGCGGTTGGGGTGGGTACAGTG
GTGATGCGCTCGGCTGGGTGCACGGTCAATGATTTGTGGGATCGGGATAT
AGACAAGAATGTAGAGCGGACCAAGAACCGGCCCATCACTTCGGGAGAGA
TCTCAGTAACGAGTGGTGTTGTGTTTTTGGGGGCGCAGCTGTTGGCGGGA
TTGGGGGTGTTGGTGCAGTTGAATGAATATAGTATTTACCTGGGCATGGC
CTCGGTCCCCTTGGTTTTGACTTACCCTTTGATGAAGCGTTGGACGAACT
ATCCTCAGCTTTTTCTCGGGGTTACCTTTAATTGGGGTGTTTTGATGGGG
TGGGCGGCCACGCATGGCTCATGTGATTGGCCGGTGATCTTGCCGTTGTA
TACCTCGGCAGTCGCTTGGACCATGGTTTATGATACTTTGTACGCGCATC
AAGATAAAAAGGATGATGCCCGCCTGGGGCTGCATTCGACTGCCTTGACA
TTCGGTGAGGACAGAACTAAGCCTATTCTAGCGGGTTTCTCGGCGGTGAT
GATCGGAGGATTGCTGGTAACGGGGGTGCAGGCGGATTTGGCATGGCCTT
TTAATGTGGGCACAGGTCTGACGGCGTGTTCTTTGTTGTGGCAGCTTGGG
ACGGCAGAGCTCAATAATCCGGTAAATCTGGCAGCACGATTTGAATCAAA
TAAATGGGTCGGCGGGGTGGTGTTTGGGAGCATTGTGGCGGGGCGGTACT
TTTGTTGA
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protein sequence of NO14G01380.1

>NO14G01380.1-protein ID=NO14G01380.1-protein|Name=NO14G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MQPYLRLARVDKPIGTYLLLWPGYWGLALAAAPGTLPDWGLLTAVGVGTV
VMRSAGCTVNDLWDRDIDKNVERTKNRPITSGEISVTSGVVFLGAQLLAG
LGVLVQLNEYSIYLGMASVPLVLTYPLMKRWTNYPQLFLGVTFNWGVLMG
WAATHGSCDWPVILPLYTSAVAWTMVYDTLYAHQDKKDDARLGLHSTALT
FGEDRTKPILAGFSAVMIGGLLVTGVQADLAWPFNVGTGLTACSLLWQLG
TAELNNPVNLAARFESNKWVGGVVFGSIVAGRYFC*
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mRNA from alignment at chr14:443128..443985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01380.1 ID=NO14G01380.1|Name=NO14G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp|location=Sequence derived from alignment at chr14:443128..443985+ (Nannochloropsis oceanica)
ATGCAACCCTACCTGCGCCTGGCCCGCGTTGACAAACCCATCGGCACCTA CCTCCTGCTCTGGCCAGGCTACTGGGGTCTTGCTCTTGCAGCAGCGCCGG GAACTTTACCGGATTGGGGACTTTTGACGGCGGTTGGGGTGGGTACAGTG GTGATGCGCTCGGCTGGGTGCACGGTCAATGATTTGTGGGATCGGGATAT AGACAAGAATGTAGAGCGGACCAAGAACCGGCCCATCACTTCGGGAGAGA TCTCAGTAACGAGTGGTGTTGTGTTTTTGGGGGCGCAGCTGTTGGCGGGA TTGGGGGTGTTGGTGCAGTTGAATGAATATAGTATTTACCTGGGCATGGC CTCGGTCCCCTTGGTTTTGACTTACCCTTTGATGAAGCGTTGGACGAACT ATCCTCAGCTTTTTCTCGGGGTTACCTTTAATTGGGGTGTTTTGATGGGG TGGGCGGCCACGCATGGCTCATGTGATTGGCCGGTGATCTTGCCGTTGTA TACCTCGGCAGTCGCTTGGACCATGGTTTATGATACTTTGTACGCGCATC AAGATAAAAAGGATGATGCCCGCCTGGGGCTGCATTCGACTGCCTTGACA TTCGGTGAGGACAGAACTAAGCCTATTCTAGCGGGTTTCTCGGCGGTGAT GATCGGAGGATTGCTGGTAACGGGGGTGCAGGCGGATTTGGCATGGCCTT TTAATGTGGGCACAGGTCTGACGGCGTGTTCTTTGTTGTGGCAGCTTGGG ACGGCAGAGCTCAATAATCCGGTAAATCTGGCAGCACGATTTGAATCAAA TAAATGGGTCGGCGGGGTGGTGTTTGGGAGCATTGTGGCGGGGCGGTACT TTTGTTGA
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Coding sequence (CDS) from alignment at chr14:443128..443985+

>NO14G01380.1 ID=NO14G01380.1|Name=NO14G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr14:443128..443985+ (Nannochloropsis oceanica)
ATGCAACCCTACCTGCGCCTGGCCCGCGTTGACAAACCCATCGGCACCTA
CCTCCTGCTCTGGCCAGGCTACTGGGGTCTTGCTCTTGCAGCAGCGCCGG
GAACTTTACCGGATTGGGGACTTTTGACGGCGGTTGGGGTGGGTACAGTG
GTGATGCGCTCGGCTGGGTGCACGGTCAATGATTTGTGGGATCGGGATAT
AGACAAGAATGTAGAGCGGACCAAGAACCGGCCCATCACTTCGGGAGAGA
TCTCAGTAACGAGTGGTGTTGTGTTTTTGGGGGCGCAGCTGTTGGCGGGA
TTGGGGGTGTTGGTGCAGTTGAATGAATATAGTATTTACCTGGGCATGGC
CTCGGTCCCCTTGGTTTTGACTTACCCTTTGATGAAGCGTTGGACGAACT
ATCCTCAGCTTTTTCTCGGGGTTACCTTTAATTGGGGTGTTTTGATGGGG
TGGGCGGCCACGCATGGCTCATGTGATTGGCCGGTGATCTTGCCGTTGTA
TACCTCGGCAGTCGCTTGGACCATGGTTTATGATACTTTGTACGCGCATC
AAGATAAAAAGGATGATGCCCGCCTGGGGCTGCATTCGACTGCCTTGACA
TTCGGTGAGGACAGAACTAAGCCTATTCTAGCGGGTTTCTCGGCGGTGAT
GATCGGAGGATTGCTGGTAACGGGGGTGCAGGCGGATTTGGCATGGCCTT
TTAATGTGGGCACAGGTCTGACGGCGTGTTCTTTGTTGTGGCAGCTTGGG
ACGGCAGAGCTCAATAATCCGGTAAATCTGGCAGCACGATTTGAATCAAA
TAAATGGGTCGGCGGGGTGGTGTTTGGGAGCATTGTGGCGGGGCGGTACT
TTTGTTGA
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Synonyms
Publications