NO14G01280.1, NO14G01280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01280.1
Unique NameNO14G01280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2032
Alignment locationchr14:412402..414433 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:412402..414433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G01280.1 vs.
Match: XP_005853682.1 (snare associated golgi protein, partial [Nannochloropsis gaditana CCMP526]; EKU22676.1 snare associated golgi protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 475.3 bits (1222), Expect = 2.200e-130
Identity = 297/488 (60.86%), Postives = 340/488 (69.67%), Query Frame = 0 
Query:    1 MLSPGLHHFPMDYARLEPDGTGGSGNAHEDNSHDHPQQHSGDREEYEDEVEILFDSPSSRATPMDDQGRASPFLPSSSSAGSSFNTSTTTPSSASSISPRSPAAAALSSVTSLLRPLGIPSWLSSSTSQSRCQSGVS----------------PFASLRRMRTSSSQEHAQAQQVTPSSLSSSLSSTSTPQALHPAASASNVLVNPRFHSHAPLWVQVTYFCVLGSLFLATVIDSFTSKRVYRLLEHLFAWIERHMILGPVVFWSAVVVFSILCIPESALTIGGGYIFAQAHGVAVGIVLCTTLILTGGVVGGVVSFLIARYLAFDTVQGWGRRYRLLRALDLSLVENGAKMVFLLRLSPFLPTPPLSYLLGTTSVKLSDFILGSGGMLPWVVTCSYLGSALKGVNDLGGGRGRGRA-WKYVWYGLGAVATIGIVAGIGVYTRRAMEEVLREQSGEGRR----EDEGRGE-----EMETVVVSRGGGE 463
            +L  G  H P DYARLE   TG    A  D +H   +   G  EE EDEVEILF SP   ATP DDQGRAS FL SSSS           PSS    SP +P A AL SV +LLRPLG    LSSS S S C+ G +                P   LRRMRTSSS EHA+ Q  T SS SS  SS+S+PQ      +AS   V+PRFHSHAP WVQVTYF +LG LFLA ++DSFTS+ +Y LLEHLFAW+E H ILGP+VFWSAVVVFS++C+PESALT+GGGYIFA+AHGV  GI+LCT L++ GGVVG V++FL+ARYLAFDTVQ W RR+RLLRALDLSLVENGAKMVFLLRLSPFLP PPLSYLLGTTSVKLSDF+LGS GMLPW+VTCSYLGSAL+GV D+ G   RG++ W Y  Y LGAV T+G+VA IG+YTRRAMEE+LRE+  EG      ED GR E     EM  V+     GE
Sbjct:    9 VLPAGSQHSPSDYARLE---TGHGCGA--DRNHRVLEARGGADEE-EDEVEILFASP---ATPTDDQGRASAFLVSSSS-----------PSS----SPPAPHATALPSVRNLLRPLGAIFSLSSS-SASGCRHGGARGAGGSLHLPPSRGSPPSRFLRRMRTSSSHEHAEGQGRTSSSSSSFSSSSSSPQP----PTASGAFVSPRFHSHAPPWVQVTYFLLLGCLFLAALVDSFTSRHLYHLLEHLFAWVEEHQILGPLVFWSAVVVFSVVCVPESALTVGGGYIFAKAHGVGWGILLCTFLMMAGGVVGSVIAFLVARYLAFDTVQRWARRHRLLRALDLSLVENGAKMVFLLRLSPFLPAPPLSYLLGTTSVKLSDFVLGSTGMLPWIVTCSYLGSALRGVADVAGKGRRGQSKWAYALYALGAVGTMGVVAAIGIYTRRAMEEILREEPSEGEERKEAEDRGRREDGVHTEMNAVLRVENSGE 467
The following BLAST results are available for this feature:
BLAST of NO14G01280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853682.12.200e-13060.86snare associated golgi protein, partial [Nannochlo... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01280NO14G01280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01280.1NO14G01280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01280.1.cds1NO14G01280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01280.1 ID=NO14G01280.1|Name=NO14G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2032bp
ATGCTTTCGCCAGGCTTACACCATTTTCCCATGGACTACGCGCGCCTGGA
GCCGGACGGGACTGGCGGGAGTGGCAATGCTCACGAGGATAATAGCCACG
ACCACCCACAACAACACAGTGGAGATAGGGAGGAGTACGAAGACGAAGTC
GAGATTTTGTTTGACTCCCCTTCCTCCCGTGCGACTCCCATGGACGATCA
AGGCCGAGCCTCCCCCTTCTTGCCGTCGTCCTCCTCTGCTGGTTCCTCTT
TCAACACGTCCACCACCACTCCCTCGTCTGCTTCTTCCATCTCCCCTCGA
AGCCCGGCTGCAGCCGCTTTATCTTCCGTCACTTCGTTACTAAGGCCGTT
GGGGATACCTTCTTGGTTGTCTTCTTCGACATCGCAATCAAGATGTCAAT
CAGGAGTCTCTCCCTTCGCCTCCCTGCGACGCATGCGCACCTCCAGCAGT
CAAGAGCACGCCCAAGCCCAACAAGTCACACCCTCCTCCCTATCCTCCTC
TTTATCCTCCACTTCCACCCCTCAAGCCCTACACCCCGCCGCGAGCGCAA
GCAACGTGCTTGTCAATCCTCGGTTCCATAGCCATGCCCCTTTATGGGTG
CAAGTCACATACTTCTGTGTCCTTGGCTCGCTGTTCCTCGCGACTGTCAT
CGATAGTTTTACGAGCAAAAGAGTGTATCGATTATTGGAGCACTTGTTTG
CGTGGATTGAGAGACACATGATATTGGGGCCCGTAGTCTTCTGGTCCGCG
GTGGTTGTTTTCTCGATCCTGTGTATTCCAGAAAGTGCCTTGACGATAGG
AGGGGGTTACATCTTCGCGCAGGCCCACGGGGTGGCAGTCGGCATTGTGC
TGTGTACGACGTTGATCTTGACGGGCGGGGTAGTGGGGGGTGTGGTCTCG
TTTTTGATTGCGCGGTACCTGGCGTTCGACACTGTACAGGGGTGGGGACG
GAGGTACAGGCTACTCCGGGCGCTTGATTTAAGCTTGGTGGAAAACGGGG
CGAAAATGGTGTTCCTATTGAGGCTGTCTCCTTTTTTGCCGACGCCGCCA
TTGAGCTACTTGCTGGGCACCACGAGTGTGAAGTTGAGCGACTTCATCTT
GGGGAGTGGCGGGATGCTTCCGTGGGTAGTAACGTGCTCGTACTTGGGGA
GTGCGTTGAAGGGGGTGAACGACTTGGGGGGAGGGAGGGGGAGAGGGAGG
GCGTGGAAGTATGTGTGGTATGGGTTAGGGGCGGTGGCCACGATAGGGAT
CGTGGCGGGCATTGGGGTATACACACGGAGAGCGATGGAAGAGGTGTTGA
GGGAGCAGTCGGGAGAGGGAAGGAGGGAGGACGAGGGGAGGGGGGAGGAG
ATGGAGACGGTGGTTGTGTCTCGGGGGGGGGGGGAGAGCTTGGAGTGGAG
GAACAGGAGGAGGTGCTGGTGGTGGGGATAGCGACCGGTGGTGGTGATGG
TGGAGGAGGAGGAGGAGGAGGAAATAAAGAAGATGAAGCAGGAGGAGGTG
GTGAAGGAGGAGGAGGGAGGGACGAGGCCAAGGGAATGGGGGAGGAAGGG
AGGGAGGAAAGAGTAGAAGGGGCATCGCCAACGCCATCAGCAGGGCGGCA
AAGGAGGCAGGCTGCTGTGGTTTAGTCACTGAAGGCGGGAAAGAGATTGA
CTTTAACCCTGTCGATACCTCACCCTCTCGTCCTCGTGCCACGCATGGCC
ATGGCGCATGGCCCTCTTGTCTTCCTCTCGTCCTCTACCCCCCTCCCCCT
CCCCCCTTCTACGCAAGCCTAGCTCAAGCCGGCGCGAACCGGAAGATGTC
CTTTTCAAAGACGAGATGGGTGGGGAGAGATGGGTAGGAGGGGTGGAAGG
AAGAGACAAGGGAAGAACCACACGCGGGGCTGAACGGAAGGGGGTTGTTC
AGCACCTTCACGGACGCTGGAGAAATTATGTCAAGCTTGCGTCGGTAGAC
AAAGTTAGGTAGGACTAAGATTATCTGGCACGAAAGAAATACCATATACA
AATGTATCAACTTTCGTAAATAGTGCATCGTC
back to top

protein sequence of NO14G01280.1

>NO14G01280.1-protein ID=NO14G01280.1-protein|Name=NO14G01280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MLSPGLHHFPMDYARLEPDGTGGSGNAHEDNSHDHPQQHSGDREEYEDEV
EILFDSPSSRATPMDDQGRASPFLPSSSSAGSSFNTSTTTPSSASSISPR
SPAAAALSSVTSLLRPLGIPSWLSSSTSQSRCQSGVSPFASLRRMRTSSS
QEHAQAQQVTPSSLSSSLSSTSTPQALHPAASASNVLVNPRFHSHAPLWV
QVTYFCVLGSLFLATVIDSFTSKRVYRLLEHLFAWIERHMILGPVVFWSA
VVVFSILCIPESALTIGGGYIFAQAHGVAVGIVLCTTLILTGGVVGGVVS
FLIARYLAFDTVQGWGRRYRLLRALDLSLVENGAKMVFLLRLSPFLPTPP
LSYLLGTTSVKLSDFILGSGGMLPWVVTCSYLGSALKGVNDLGGGRGRGR
AWKYVWYGLGAVATIGIVAGIGVYTRRAMEEVLREQSGEGRREDEGRGEE
METVVVSRGGGESLEWRNRRRCWWWG*
back to top

mRNA from alignment at chr14:412402..414433+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01280.1 ID=NO14G01280.1|Name=NO14G01280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2032bp|location=Sequence derived from alignment at chr14:412402..414433+ (Nannochloropsis oceanica)
ATGCTTTCGCCAGGCTTACACCATTTTCCCATGGACTACGCGCGCCTGGA
GCCGGACGGGACTGGCGGGAGTGGCAATGCTCACGAGGATAATAGCCACG
ACCACCCACAACAACACAGTGGAGATAGGGAGGAGTACGAAGACGAAGTC
GAGATTTTGTTTGACTCCCCTTCCTCCCGTGCGACTCCCATGGACGATCA
AGGCCGAGCCTCCCCCTTCTTGCCGTCGTCCTCCTCTGCTGGTTCCTCTT
TCAACACGTCCACCACCACTCCCTCGTCTGCTTCTTCCATCTCCCCTCGA
AGCCCGGCTGCAGCCGCTTTATCTTCCGTCACTTCGTTACTAAGGCCGTT
GGGGATACCTTCTTGGTTGTCTTCTTCGACATCGCAATCAAGATGTCAAT
CAGGAGTCTCTCCCTTCGCCTCCCTGCGACGCATGCGCACCTCCAGCAGT
CAAGAGCACGCCCAAGCCCAACAAGTCACACCCTCCTCCCTATCCTCCTC
TTTATCCTCCACTTCCACCCCTCAAGCCCTACACCCCGCCGCGAGCGCAA
GCAACGTGCTTGTCAATCCTCGGTTCCATAGCCATGCCCCTTTATGGGTG
CAAGTCACATACTTCTGTGTCCTTGGCTCGCTGTTCCTCGCGACTGTCAT
CGATAGTTTTACGAGCAAAAGAGTGTATCGATTATTGGAGCACTTGTTTG
CGTGGATTGAGAGACACATGATATTGGGGCCCGTAGTCTTCTGGTCCGCG
GTGGTTGTTTTCTCGATCCTGTGTATTCCAGAAAGTGCCTTGACGATAGG
AGGGGGTTACATCTTCGCGCAGGCCCACGGGGTGGCAGTCGGCATTGTGC
TGTGTACGACGTTGATCTTGACGGGCGGGGTAGTGGGGGGTGTGGTCTCG
TTTTTGATTGCGCGGTACCTGGCGTTCGACACTGTACAGGGGTGGGGACG
GAGGTACAGGCTACTCCGGGCGCTTGATTTAAGCTTGGTGGAAAACGGGG
CGAAAATGGTGTTCCTATTGAGGCTGTCTCCTTTTTTGCCGACGCCGCCA
TTGAGCTACTTGCTGGGCACCACGAGTGTGAAGTTGAGCGACTTCATCTT
GGGGAGTGGCGGGATGCTTCCGTGGGTAGTAACGTGCTCGTACTTGGGGA
GTGCGTTGAAGGGGGTGAACGACTTGGGGGGAGGGAGGGGGAGAGGGAGG
GCGTGGAAGTATGTGTGGTATGGGTTAGGGGCGGTGGCCACGATAGGGAT
CGTGGCGGGCATTGGGGTATACACACGGAGAGCGATGGAAGAGGTGTTGA
GGGAGCAGTCGGGAGAGGGAAGGAGGGAGGACGAGGGGAGGGGGGAGGAG
ATGGAGACGGTGGTTGTGTCTCGGGGGGGGGGGGAGAGCTTGGAGTGGAG
GAACAGGAGGAGGTGCTGGTGGTGGGGATAGCGACCGGTGGTGGTGATGG
TGGAGGAGGAGGAGGAGGAGGAAATAAAGAAGATGAAGCAGGAGGAGGTG
GTGAAGGAGGAGGAGGGAGGGACGAGGCCAAGGGAATGGGGGAGGAAGGG
AGGGAGGAAAGAGTAGAAGGGGCATCGCCAACGCCATCAGCAGGGCGGCA
AAGGAGGCAGGCTGCTGTGGTTTAGTCACTGAAGGCGGGAAAGAGATTGA
CTTTAACCCTGTCGATACCTCACCCTCTCGTCCTCGTGCCACGCATGGCC
ATGGCGCATGGCCCTCTTGTCTTCCTCTCGTCCTCTACCCCCCTCCCCCT
CCCCCCTTCTACGCAAGCCTAGCTCAAGCCGGCGCGAACCGGAAGATGTC
CTTTTCAAAGACGAGATGGGTGGGGAGAGATGGGTAGGAGGGGTGGAAGG
AAGAGACAAGGGAAGAACCACACGCGGGGCTGAACGGAAGGGGGTTGTTC
AGCACCTTCACGGACGCTGGAGAAATTATGTCAAGCTTGCGTCGGTAGAC
AAAGTTAGGTAGGACTAAGATTATCTGGCACGAAAGAAATACCATATACA
AATGTATCAACTTTCGTAAATAGTGCATCGTC
back to top

Coding sequence (CDS) from alignment at chr14:412402..414433+

>NO14G01280.1 ID=NO14G01280.1|Name=NO14G01280.1|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at chr14:412402..414433+ (Nannochloropsis oceanica)
ATGCTTTCGCCAGGCTTACACCATTTTCCCATGGACTACGCGCGCCTGGA
GCCGGACGGGACTGGCGGGAGTGGCAATGCTCACGAGGATAATAGCCACG
ACCACCCACAACAACACAGTGGAGATAGGGAGGAGTACGAAGACGAAGTC
GAGATTTTGTTTGACTCCCCTTCCTCCCGTGCGACTCCCATGGACGATCA
AGGCCGAGCCTCCCCCTTCTTGCCGTCGTCCTCCTCTGCTGGTTCCTCTT
TCAACACGTCCACCACCACTCCCTCGTCTGCTTCTTCCATCTCCCCTCGA
AGCCCGGCTGCAGCCGCTTTATCTTCCGTCACTTCGTTACTAAGGCCGTT
GGGGATACCTTCTTGGTTGTCTTCTTCGACATCGCAATCAAGATGTCAAT
CAGGAGTCTCTCCCTTCGCCTCCCTGCGACGCATGCGCACCTCCAGCAGT
CAAGAGCACGCCCAAGCCCAACAAGTCACACCCTCCTCCCTATCCTCCTC
TTTATCCTCCACTTCCACCCCTCAAGCCCTACACCCCGCCGCGAGCGCAA
GCAACGTGCTTGTCAATCCTCGGTTCCATAGCCATGCCCCTTTATGGGTG
CAAGTCACATACTTCTGTGTCCTTGGCTCGCTGTTCCTCGCGACTGTCAT
CGATAGTTTTACGAGCAAAAGAGTGTATCGATTATTGGAGCACTTGTTTG
CGTGGATTGAGAGACACATGATATTGGGGCCCGTAGTCTTCTGGTCCGCG
GTGGTTGTTTTCTCGATCCTGTGTATTCCAGAAAGTGCCTTGACGATAGG
AGGGGGTTACATCTTCGCGCAGGCCCACGGGGTGGCAGTCGGCATTGTGC
TGTGTACGACGTTGATCTTGACGGGCGGGGTAGTGGGGGGTGTGGTCTCG
TTTTTGATTGCGCGGTACCTGGCGTTCGACACTGTACAGGGGTGGGGACG
GAGGTACAGGCTACTCCGGGCGCTTGATTTAAGCTTGGTGGAAAACGGGG
CGAAAATGGTGTTCCTATTGAGGCTGTCTCCTTTTTTGCCGACGCCGCCA
TTGAGCTACTTGCTGGGCACCACGAGTGTGAAGTTGAGCGACTTCATCTT
GGGGAGTGGCGGGATGCTTCCGTGGGTAGTAACGTGCTCGTACTTGGGGA
GTGCGTTGAAGGGGGTGAACGACTTGGGGGGAGGGAGGGGGAGAGGGAGG
GCGTGGAAGTATGTGTGGTATGGGTTAGGGGCGGTGGCCACGATAGGGAT
CGTGGCGGGCATTGGGGTATACACACGGAGAGCGATGGAAGAGGTGTTGA
GGGAGCAGTCGGGAGAGGGAAGGAGGGAGGACGAGGGGAGGGGGGAGGAG
ATGGAGACGGTGGTTGTGTCTCGGGGGGGGGGGGAGAGCTTGGAGTGGAG
GAACAGGAGGAGGTGCTGGTGGTGGGGATAG
back to top
Synonyms
Publications