NO14G01250.1, NO14G01250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01250.1
Unique NameNO14G01250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2411
Alignment locationchr14:404552..407163 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:404552..407163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01250.1 vs.
Match: EWM24673.1 (hypothetical protein Naga_100123g17 [Nannochloropsis gaditana])

HSP 1 Score: 910.6 bits (2352), Expect = 2.500e-261
Identity = 440/507 (86.79%), Postives = 480/507 (94.67%), Query Frame = 0 
Query:   69 KGGRGSTFGNKGAWAAAVAAVDPAEGTKVEKEKSWRQKYTKYIVRQVQLGLNSPKNAVSIAQGGLDYCYKNFEFIRDGKTYKLGEALEKFGGSHAFETGVIEGDGKLPKFGPECQVPYGKKVLKGEALKAQLDKWASYGTIEPSARDAITYLVDNPKVLDLSDKYFVLLGAGSAMGPLLTLLSLGANIIAIDLDRQGIWERLIRETRNSPGTLIFPLKKKQSTLKSDAEIAAQAGGNLFTDTPEIRAWLMGVERGKDLVVGAYAYLDGELHVKVSLAMDAIIRDLTKMRKATPAYLCTPTDVHVITKEAHDAAAKEYKKINFTNVVSRLSPFALPGTGYLVKNALDPVKAEDGEELYLVDGIVGRQGPNYALAKRIQHWRAVVAREVDKVNVSSNIAPSTATVSVTSNKLFALAYKGFHFFAPLEVFQQETSNAVMAAMLIHDIRNPKVPSNPKNKLRNPLELFTYGSLHGGVWRMAYKIDSIGEPAAFLYLFTTPLGMMIVVAFWA 576
            K   GSTFGNKGAWAAAV AVD AEG K+EKEK WRQKY KYIVRQVQ+GL SPKNAVS+AQGGL+YCY+NFEFIRDGKTYKLGEA+EKFGGSH++ETGVI+G+GKLPKFGP CQVPYGKKVL+GEAL+AQ ++WA YGT+EPSARDAI+YL+DNPKVLDLSDKYFVLLGAGSAMGP LTLL+LGANIIAIDLDRQGIWERLIRETR SPGTLIFPLKKKQSTLK+D E+AAQAGGNLFTDTPE+RAWLMGVE GKDLVVGAYAYLDGELHVKVSLAMDAIIRDLT++RKATPAYLCTPTDVHVI+KEAHDAAA ++ +++  N+V +LS F LPG+GYLVKNAL PV+AEDGEE+Y VDGIVGRQGPNYALAKRIQHWRAVVAREVDKVNVSSNIAPSTATVSVTSNKLFALAYKGFHFF PLEVFQQETSNAVMAAMLIHDIRNP VPSNPKNK+RNPLELFTYGSLHGG+WRMAYKIDSIGEPAAFLYLFTTPLGM+++VAF+A
Sbjct:   57 KRAAGSTFGNKGAWAAAVGAVDKAEGLKIEKEKQWRQKYAKYIVRQVQVGLKSPKNAVSVAQGGLEYCYQNFEFIRDGKTYKLGEAMEKFGGSHSYETGVIKGEGKLPKFGPVCQVPYGKKVLEGEALRAQFEQWARYGTVEPSARDAISYLIDNPKVLDLSDKYFVLLGAGSAMGPFLTLLALGANIIAIDLDRQGIWERLIRETRKSPGTLIFPLKKKQSTLKTDPEVAAQAGGNLFTDTPELRAWLMGVETGKDLVVGAYAYLDGELHVKVSLAMDAIIRDLTRLRKATPAYLCTPTDVHVISKEAHDAAAAQHCELSLVNLVCKLSLFNLPGSGYLVKNALPPVRAEDGEEIYFVDGIVGRQGPNYALAKRIQHWRAVVAREVDKVNVSSNIAPSTATVSVTSNKLFALAYKGFHFFKPLEVFQQETSNAVMAAMLIHDIRNPNVPSNPKNKIRNPLELFTYGSLHGGIWRMAYKIDSIGEPAAFLYLFTTPLGMLVLVAFYA 563
The following BLAST results are available for this feature:
BLAST of NO14G01250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24673.12.500e-26186.79hypothetical protein Naga_100123g17 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01250NO14G01250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01250.1NO14G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01250.1.cds1NO14G01250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01250.1.cds2NO14G01250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01250.1 ID=NO14G01250.1|Name=NO14G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2411bp
GTGGAGATGCTGAGGATGAGGAGGAATCAGACGTGCGAAGAAATCCGTCT
TGCATGTAACCAGTGTGCTACTTATCTGTCGAACCCCAAAATTTTCAGTC
CCGCGCAAGACGTGCAACAGAATGTCTCTGGGCAAGTATGTTGTCGATTG
TGTCGGTTGCTAATTTCCCCCCCTTCACTCGCTCACTCCCTCTTCTTTCG
TTCCTTCCCCTCCCCGACAGGAGGCAGCGGGACACAGCTCCTTACCACAC
TTACACCTCTCCACACTCCGTCATCTTAAGAATGGGCAAGCCTCAGCGAC
CCAAGGGACCGGAGGTGGGCCTCGTCTTCCCTACGGACAAGAAGGGTGGC
CGTGGCTCCACGTTCGGCAACAAAGGCGCTTGGGCCGCAGCCGTCGCGGC
TGTCGACCCCGCGGAGGGCACAAAGGTGGAGAAGGAAAAAAGCTGGCGCC
AGAAATATACCAAGTACATCGTTCGTCAAGTGCAACTCGGACTTAATTCC
CCCAAGAACGCTGTCAGCATCGCGCAGGGCGGCCTGGACTACTGCTACAA
AAACTTTGAATTCATCCGAGATGGAAAGACCTACAAGCTGGGGGAGGCGC
TGGAGAAATTTGGGGGGTCGCATGCCTTTGAAACGGGGGTGATTGAAGGG
GACGGGAAGCTGCCCAAGTTTGGCCCGGAGTGCCAGGTGCCATACGGGAA
GAAGGTCTTGAAGGGGGAGGCGTTGAAGGCGCAGTTGGACAAATGGGCGA
GCTACGGGACCATCGAGCCGTCAGCCAGGGACGCAATCACGTACTTGGTG
GACAACCCCAAGGTGCTGGATCTGTCGGACAAATACTTTGTCTTGCTGGG
GGCGGGGTCGGCCATGGGGCCCCTCCTCACTCTCCTCTCCCTAGGTGCGA
ACATAATTGCGATTGATCTGGACAGGCAAGGTATTTGGGAGAGGCTGATC
CGAGAGACTCGAAACTCGCCGGGGACGTTGATTTTCCCGCTGAAGAAGAA
GCAGTCGACCTTGAAAAGCGATGCGGAGATTGCGGCCCAAGCGGGAGGGA
ACTTGTTCACAGACACCCCGGAGATTCGTGCGTGGCTGATGGGGGTGGAG
AGGGGAAAGGATCTGGTGGTGGGGGCGTATGCCTACCTAGACGGGGAGTT
GCACGTGAAGGTGTCTCTGGCCATGGACGCAATTATCCGGGATTTGACCA
AGATGAGGAAGGCCACGCCCGCTTACCTCTGCACACCGACTGACGTCCAC
GTCATTACCAAGGAGGCCCACGACGCGGCGGCGAAGGAGTACAAGAAGAT
TAACTTCACCAATGTCGTCTCGAGGTTGAGCCCTTTTGCTCTGCCTGGTA
CCGGGTACCTGGTCAAGAACGCCTTAGACCCTGTCAAGGCAGAGGACGGC
GAGGAACTCTACCTTGTCGACGGGATCGTGGGAAGACAAGGACCGAACTA
CGCCCTGGCGAAGCGGATTCAGCACTGGCGGGCGGTGGTGGCTCGGGAGG
TGGATAAGGTCAATGTGTCCTCCAACATAGCGCCGTCCACGGCCACCGTG
TCGGTGACGAGCAACAAGCTATTCGCCTTGGCCTACAAGGGATTCCACTT
CTTTGCCCCGCTGGAGGTGTTCCAACAGGAGACGTCCAACGCCGTCATGG
CCGCCATGCTGATCCACGATATTCGCAACCCCAAGGTGCCTTCCAACCCC
AAGAACAAGCTCCGCAATCCGCTCGAGCTGTTTACGTATGGATCTCTCCA
TGGCGGGGTCTGGCGCATGGCTTACAAGATTGACTCGATCGGCGAGCCCG
CGGCGTTTTTGTACTTGTTCACCACACCCTTGGGAATGATGATTGTGGTG
GCTTTCTGGGCGATAGTATTGGGTATCATCAAGGGATACGCTGGGTTTTA
GGGAAAGGCAGGAGGGAGGTAGAGAGGCAAGGAGGGAAGGAGGGAGGGAG
AGAGAGGTCTTTGTATGATGTTTTGAGTGAGTCCTTGTTTATCAGTATCG
AGTGTGTGAGGCGAGGCACCACATTCTTTTCTCACTTCTTTCCTTTATAG
TGCTTTCATTCGGCAGAAAAGAGTGACAGAGTGGAGAGGAAGCATGTACA
CCCCCATCAACGAAAAAAAGAGATGGGCAGAGGCGATGTTTGTCTAGCAT
TGTATTCTCGATTCGGTTTCCTACTTTCATTTGAGCTCACACACAGCTGC
TGCTATCGCATGCAGACAGTGTCGTGCCTAAGAAAAAGGGCGAGGAACAC
CCAACACTTACTTACTTTATGTATACCATGGAAAGACAGTAACTCAAAAA
AAGGAGCGGGGGAAGAAGAGGTATGTTCGTAGAAAATACAGCCGACGGAG
ACAAGGAGCATCAGATGCAGCTTAGAAAAAGCAGGAACATAACACGCTGA
GTTCAAAAGGC
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protein sequence of NO14G01250.1

>NO14G01250.1-protein ID=NO14G01250.1-protein|Name=NO14G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MLSIVSVANFPPFTRSLPLLSFLPLPDRRQRDTAPYHTYTSPHSVILRMG
KPQRPKGPEVGLVFPTDKKGGRGSTFGNKGAWAAAVAAVDPAEGTKVEKE
KSWRQKYTKYIVRQVQLGLNSPKNAVSIAQGGLDYCYKNFEFIRDGKTYK
LGEALEKFGGSHAFETGVIEGDGKLPKFGPECQVPYGKKVLKGEALKAQL
DKWASYGTIEPSARDAITYLVDNPKVLDLSDKYFVLLGAGSAMGPLLTLL
SLGANIIAIDLDRQGIWERLIRETRNSPGTLIFPLKKKQSTLKSDAEIAA
QAGGNLFTDTPEIRAWLMGVERGKDLVVGAYAYLDGELHVKVSLAMDAII
RDLTKMRKATPAYLCTPTDVHVITKEAHDAAAKEYKKINFTNVVSRLSPF
ALPGTGYLVKNALDPVKAEDGEELYLVDGIVGRQGPNYALAKRIQHWRAV
VAREVDKVNVSSNIAPSTATVSVTSNKLFALAYKGFHFFAPLEVFQQETS
NAVMAAMLIHDIRNPKVPSNPKNKLRNPLELFTYGSLHGGVWRMAYKIDS
IGEPAAFLYLFTTPLGMMIVVAFWAIVLGIIKGYAGF*
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mRNA from alignment at chr14:404552..407163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01250.1 ID=NO14G01250.1|Name=NO14G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp|location=Sequence derived from alignment at chr14:404552..407163+ (Nannochloropsis oceanica)
GTGGAGATGCTGAGGATGAGGAGGAATCAGACGTGCGAAGAAATCCGTCT
TGCATGTAACCAGTGTGCTACTTATCTGTCGAACCCCAAAATTTTCAGTC
CCGCGCAAGACGTGCAACAGAATGTCTCTGGGCAAGTATGTTGTCGATTG
TGTCGGTTGCTAATTTCCCCCCCTTCACTCGCTCACTCCCTCTTCTTTCG
TTCCTTCCCCTCCCCGACAGGAGGCAGCGGGACACAGCTCCTTACCACAC
TTACACCTCTCCACACTCCGTCATCTTAAGAATGGGCAAGCCTCAGCGAC
CCAAGGGACCGGAGGTGGGCCTCGTCTTCCCTACGGACAAGAAGGGTGGC
CGGTACGTATAAGGGAACGGGATACAAAGAGGGGAGGGAAGGAGGGAGAG
CTCGAGGATCCTGATTACGCGGTAGGCCCGCTCCCGTGTGCGTGCATGCG
TGCGCATGGTCCTAATGCTGCCGATGGAGGGCATTGGGTCATTGGTCCGC
ACGATGAAAATTGCGGAAGAGTGACCCCTGATTCCTTCATCCCCTAACAA
CAGTGGCTCCACGTTCGGCAACAAAGGCGCTTGGGCCGCAGCCGTCGCGG
CTGTCGACCCCGCGGAGGGCACAAAGGTGGAGAAGGAAAAAAGCTGGCGC
CAGAAATATACCAAGTACATCGTTCGTCAAGTGCAACTCGGACTTAATTC
CCCCAAGAACGCTGTCAGCATCGCGCAGGGCGGCCTGGACTACTGCTACA
AAAACTTTGAATTCATCCGAGATGGAAAGACCTACAAGCTGGGGGAGGCG
CTGGAGAAATTTGGGGGGTCGCATGCCTTTGAAACGGGGGTGATTGAAGG
GGACGGGAAGCTGCCCAAGTTTGGCCCGGAGTGCCAGGTGCCATACGGGA
AGAAGGTCTTGAAGGGGGAGGCGTTGAAGGCGCAGTTGGACAAATGGGCG
AGCTACGGGACCATCGAGCCGTCAGCCAGGGACGCAATCACGTACTTGGT
GGACAACCCCAAGGTGCTGGATCTGTCGGACAAATACTTTGTCTTGCTGG
GGGCGGGGTCGGCCATGGGGCCCCTCCTCACTCTCCTCTCCCTAGGTGCG
AACATAATTGCGATTGATCTGGACAGGCAAGGTATTTGGGAGAGGCTGAT
CCGAGAGACTCGAAACTCGCCGGGGACGTTGATTTTCCCGCTGAAGAAGA
AGCAGTCGACCTTGAAAAGCGATGCGGAGATTGCGGCCCAAGCGGGAGGG
AACTTGTTCACAGACACCCCGGAGATTCGTGCGTGGCTGATGGGGGTGGA
GAGGGGAAAGGATCTGGTGGTGGGGGCGTATGCCTACCTAGACGGGGAGT
TGCACGTGAAGGTGTCTCTGGCCATGGACGCAATTATCCGGGATTTGACC
AAGATGAGGAAGGCCACGCCCGCTTACCTCTGCACACCGACTGACGTCCA
CGTCATTACCAAGGAGGCCCACGACGCGGCGGCGAAGGAGTACAAGAAGA
TTAACTTCACCAATGTCGTCTCGAGGTTGAGCCCTTTTGCTCTGCCTGGT
ACCGGGTACCTGGTCAAGAACGCCTTAGACCCTGTCAAGGCAGAGGACGG
CGAGGAACTCTACCTTGTCGACGGGATCGTGGGAAGACAAGGACCGAACT
ACGCCCTGGCGAAGCGGATTCAGCACTGGCGGGCGGTGGTGGCTCGGGAG
GTGGATAAGGTCAATGTGTCCTCCAACATAGCGCCGTCCACGGCCACCGT
GTCGGTGACGAGCAACAAGCTATTCGCCTTGGCCTACAAGGGATTCCACT
TCTTTGCCCCGCTGGAGGTGTTCCAACAGGAGACGTCCAACGCCGTCATG
GCCGCCATGCTGATCCACGATATTCGCAACCCCAAGGTGCCTTCCAACCC
CAAGAACAAGCTCCGCAATCCGCTCGAGCTGTTTACGTATGGATCTCTCC
ATGGCGGGGTCTGGCGCATGGCTTACAAGATTGACTCGATCGGCGAGCCC
GCGGCGTTTTTGTACTTGTTCACCACACCCTTGGGAATGATGATTGTGGT
GGCTTTCTGGGCGATAGTATTGGGTATCATCAAGGGATACGCTGGGTTTT
AGGGAAAGGCAGGAGGGAGGTAGAGAGGCAAGGAGGGAAGGAGGGAGGGA
GAGAGAGGTCTTTGTATGATGTTTTGAGTGAGTCCTTGTTTATCAGTATC
GAGTGTGTGAGGCGAGGCACCACATTCTTTTCTCACTTCTTTCCTTTATA
GTGCTTTCATTCGGCAGAAAAGAGTGACAGAGTGGAGAGGAAGCATGTAC
ACCCCCATCAACGAAAAAAAGAGATGGGCAGAGGCGATGTTTGTCTAGCA
TTGTATTCTCGATTCGGTTTCCTACTTTCATTTGAGCTCACACACAGCTG
CTGCTATCGCATGCAGACAGTGTCGTGCCTAAGAAAAAGGGCGAGGAACA
CCCAACACTTACTTACTTTATGTATACCATGGAAAGACAGTAACTCAAAA
AAAGGAGCGGGGGAAGAAGAGGTATGTTCGTAGAAAATACAGCCGACGGA
GACAAGGAGCATCAGATGCAGCTTAGAAAAAGCAGGAACATAACACGCTG
AGTTCAAAAGGC
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Coding sequence (CDS) from alignment at chr14:404552..407163+

>NO14G01250.1 ID=NO14G01250.1|Name=NO14G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr14:404552..407163+ (Nannochloropsis oceanica)
ATGTTGTCGATTGTGTCGGTTGCTAATTTCCCCCCCTTCACTCGCTCACT
CCCTCTTCTTTCGTTCCTTCCCCTCCCCGACAGGAGGCAGCGGGACACAG
CTCCTTACCACACTTACACCTCTCCACACTCCGTCATCTTAAGAATGGGC
AAGCCTCAGCGACCCAAGGGACCGGAGGTGGGCCTCGTCTTCCCTACGGA
CAAGAAGGGTGGCCGTGGCTCCACGTTCGGCAACAAAGGCGCTTGGGCCG
CAGCCGTCGCGGCTGTCGACCCCGCGGAGGGCACAAAGGTGGAGAAGGAA
AAAAGCTGGCGCCAGAAATATACCAAGTACATCGTTCGTCAAGTGCAACT
CGGACTTAATTCCCCCAAGAACGCTGTCAGCATCGCGCAGGGCGGCCTGG
ACTACTGCTACAAAAACTTTGAATTCATCCGAGATGGAAAGACCTACAAG
CTGGGGGAGGCGCTGGAGAAATTTGGGGGGTCGCATGCCTTTGAAACGGG
GGTGATTGAAGGGGACGGGAAGCTGCCCAAGTTTGGCCCGGAGTGCCAGG
TGCCATACGGGAAGAAGGTCTTGAAGGGGGAGGCGTTGAAGGCGCAGTTG
GACAAATGGGCGAGCTACGGGACCATCGAGCCGTCAGCCAGGGACGCAAT
CACGTACTTGGTGGACAACCCCAAGGTGCTGGATCTGTCGGACAAATACT
TTGTCTTGCTGGGGGCGGGGTCGGCCATGGGGCCCCTCCTCACTCTCCTC
TCCCTAGGTGCGAACATAATTGCGATTGATCTGGACAGGCAAGGTATTTG
GGAGAGGCTGATCCGAGAGACTCGAAACTCGCCGGGGACGTTGATTTTCC
CGCTGAAGAAGAAGCAGTCGACCTTGAAAAGCGATGCGGAGATTGCGGCC
CAAGCGGGAGGGAACTTGTTCACAGACACCCCGGAGATTCGTGCGTGGCT
GATGGGGGTGGAGAGGGGAAAGGATCTGGTGGTGGGGGCGTATGCCTACC
TAGACGGGGAGTTGCACGTGAAGGTGTCTCTGGCCATGGACGCAATTATC
CGGGATTTGACCAAGATGAGGAAGGCCACGCCCGCTTACCTCTGCACACC
GACTGACGTCCACGTCATTACCAAGGAGGCCCACGACGCGGCGGCGAAGG
AGTACAAGAAGATTAACTTCACCAATGTCGTCTCGAGGTTGAGCCCTTTT
GCTCTGCCTGGTACCGGGTACCTGGTCAAGAACGCCTTAGACCCTGTCAA
GGCAGAGGACGGCGAGGAACTCTACCTTGTCGACGGGATCGTGGGAAGAC
AAGGACCGAACTACGCCCTGGCGAAGCGGATTCAGCACTGGCGGGCGGTG
GTGGCTCGGGAGGTGGATAAGGTCAATGTGTCCTCCAACATAGCGCCGTC
CACGGCCACCGTGTCGGTGACGAGCAACAAGCTATTCGCCTTGGCCTACA
AGGGATTCCACTTCTTTGCCCCGCTGGAGGTGTTCCAACAGGAGACGTCC
AACGCCGTCATGGCCGCCATGCTGATCCACGATATTCGCAACCCCAAGGT
GCCTTCCAACCCCAAGAACAAGCTCCGCAATCCGCTCGAGCTGTTTACGT
ATGGATCTCTCCATGGCGGGGTCTGGCGCATGGCTTACAAGATTGACTCG
ATCGGCGAGCCCGCGGCGTTTTTGTACTTGTTCACCACACCCTTGGGAAT
GATGATTGTGGTGGCTTTCTGGGCGATAGTATTGGGTATCATCAAGGGAT
ACGCTGGGTTTTAG
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Synonyms
Publications