NO14G01210.2, NO14G01210.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01210.2
Unique NameNO14G01210.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1858
Alignment locationchr14:393233..395323 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:393233..395323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01210.2 vs.
Match: OWZ16018.1 (Pre-mRNA-splicing factor cwc2 [Phytophthora megakarya])

HSP 1 Score: 432.6 bits (1111), Expect = 1.900e-117
Identity = 205/397 (51.64%), Postives = 269/397 (67.76%), Query Frame = 0 
Query:   72 SVHRLEFPISYPTTTPNSDLGASYTVYERNWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETVDVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQQNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDPAETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTVDDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKDQREVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQG-VSLQPTAFDYPERYILPVPKKARVEG 468
            S +  E P+         D+GASY VYE+NW C  C  DNYA +++C RCRAAK E  + ++   + + +  H WRE +D T+ ++YYY+TET E +W+RP EMG AP A+GW+GRG AG     +Y+  N +++ RPARKQ   +    S LEGA EYNIWY KY G+HW   +G++PA TRC ++ DAG TKAD +   +++FC+HFARG CARG EC Y+HR+P+V D+   G +HDCFGRERHA  RDDM G G+FT  SRTLYVGGI        +E E  +  QFGEWGEVE+VN + R S  FVRFR R+N EF KEAM+NQ+L   E LNV+WA DDPNPVA+EA  R++ DA + MM  +G  + +  AFDYPE+Y +P PK+ R+EG
Sbjct:    3 SANDREQPVQVTAVGTLGDVGASYAVYEKNWICDDCGHDNYARRKRCFRCRAAKVERPDVLV---VDNKARAHTWREALDPTTHKIYYYNTETNETQWERPVEMGAAPHATGWFGRGKAGVDEGDRYETLNAKFMARPARKQIEAMPTVNSQLEGAYEYNIWYDKYVGDHWNDARGKEPATTRCDLEQDAGKTKADVVSKANRYFCLHFARGMCARGAECSYYHRLPSVADETRLGMMHDCFGRERHATDRDDMAGTGNFTRNSRTLYVGGIKSTTGHALKEQEAALWKQFGEWGEVENVNVINRKSICFVRFRHRTNAEFAKEAMANQSLQSDEVLNVRWAFDDPNPVAKEAGERADRDAIIAMMHARGAATTEDGAFDYPEQYQMPAPKRQRIEG 396
The following BLAST results are available for this feature:
BLAST of NO14G01210.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OWZ16018.11.900e-11751.64Pre-mRNA-splicing factor cwc2 [Phytophthora megaka... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01210NO14G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01210.2NO14G01210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01210.2.cds1NO14G01210.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01210.2.cds2NO14G01210.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01210.2.cds3NO14G01210.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01210.2 ID=NO14G01210.2|Name=NO14G01210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1858bp
CATGGACAGGGCTTACTATTTCATCGTGTCTTGCAGTCTAGCGGGGGCCT
TTGGGCTCGACATTGATTGTTCCGGCTTCTACGTCCCACTATCCTACTTC
CTCTCATGGCGGCACCACGCGGCTTTGAGGACGTGACACGGCGGGATCTT
ACTGGTATTGCCACACTTGGGTATGTATCTACGTCTGCATTTGTATATTA
ATTATTTGAACGGGTCGCATGTGTCGCTGGCCGGCGTGCATTTATCCCCT
TTCTTCGCGCTTGCGCTCCACCACCCTGTACTTGCCGCCCAGCATTCCAA
CAAGAATACACCGCCCGAACGCCCTTCAATTATGTGTGCCTGCTTCGATA
CTGTCATCATTCCTTTCCTTTCCTCCCGTTCCCCCTCTGTCCATCGACTC
GAGTTTCCCATTTCCTACCCCACAACCACTCCCAACAGCGACCTCGGTGC
CTCTTACACCGTCTACGAACGCAACTGGGCGTGCCCGAAATGCAAATTCG
ACAACTATGCGTCCAAGCAAAAATGTAACCGCTGTCGGGCCGCTAAACCC
GAAGGCACCGAGCACATCCTTCCTTCCTCCCTCCCTTCCTCCTCCTCTGT
CCACGCCTGGCGGGAGACCGTGGACGTGACGTCACAACAACTGTACTACT
ACCACACCGAAACGGGAGAGGTCCGTTGGGATCGCCCTCCAGAGATGGGA
CAGGCGCCCATGGCCTCAGGATGGTACGGTCGAGGTGCCGCTGGAGGAAG
GGCTGCCCAACAGTATCAGCAGCAGAACGAGGAGTACCTCAAGAGGCCGG
CGAGGAAACAAAAGGCGTTTATAGAGGCAGGACGATCCGTGCTGGAGGGG
GCAAATGAGTACAACATCTGGTACGGAAAATACACGGGGGAGCACTGGAG
GCAGGGCAAGGGAAGAGACCCAGCTGAAACTAGGTGTGTGGTCAAGACAG
ACGCGGGATGGACCAAGGCGGATAAGATTGATAGTAAATCCAAGTTCTTC
TGCATCCATTTCGCCCGCGGTGGCTGTGCACGAGGGCACGAATGCCAATA
CTTCCATCGGATCCCGACGGTGGACGATGATAAGACGGCGGGGGAGTTGC
ATGATTGTTTCGGGAGGGAGCGACACGCGGGACACAGGGACGACATGGAC
GGCGTGGGTTCCTTCACCCACCCATCACGCACGCTGTATGTGGGGGGGAT
TGTGAAAGCGGCGTACAAGGACCAAAGGGAGGTAGAGGAGGTGGTAAGGA
CGCAGTTCGGGGAGTGGGGGGAGGTGGAGCACGTGAATTTCGTGCCTCGG
ATCTCGGCGGCTTTCGTCAGGTTTCGCCTTCGCAGCAATTGCGAATTCTG
CAAGGAAGCAATGAGCAATCAAGCATTACTCGGAAAAGAAACGCTGAATG
TTAAGTGGGCCTCTGACGACCCCAACCCCGTCGCGCAAGAAGCAGTCGCT
CGTTCCAACCTCGACGCGGCCATGCTGATGATGCAGCAGCAAGGTGTGAG
CTTACAACCGACTGCCTTTGATTACCCGGAGAGGTACATTCTGCCGGTGC
CGAAAAAGGCCAGGGTTGAGGGAGGGGGGGAGGGAGGGGGGGGGGCGGGA
TGGCGTACCCTGATACGGATGGGCAGTATGAAGGAAGGGCGGGAGAATGT
GAGGGAAGCGAGGAGTGGAAGGCGGTGTTCGATCCAAGTCGATAATGTTC
TTGTTACTGCTGTGGAAAAGGAGGGGATGGGCGAAGAGGGAGGGCTAGAT
GGAGATAGAGATAGAGTTGGTGGGGGAAACGAGGTAGGAAGCCAGGAGGA
GAAGGAATCAGGAGCACCTCGACCACCAGCGCCATCAGCACTGGAAGAAA
ACAAATGA
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protein sequence of NO14G01210.2

>NO14G01210.2-protein ID=NO14G01210.2-protein|Name=NO14G01210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MYLRLHLYINYLNGSHVSLAGVHLSPFFALALHHPVLAAQHSNKNTPPER
PSIMCACFDTVIIPFLSSRSPSVHRLEFPISYPTTTPNSDLGASYTVYER
NWACPKCKFDNYASKQKCNRCRAAKPEGTEHILPSSLPSSSSVHAWRETV
DVTSQQLYYYHTETGEVRWDRPPEMGQAPMASGWYGRGAAGGRAAQQYQQ
QNEEYLKRPARKQKAFIEAGRSVLEGANEYNIWYGKYTGEHWRQGKGRDP
AETRCVVKTDAGWTKADKIDSKSKFFCIHFARGGCARGHECQYFHRIPTV
DDDKTAGELHDCFGRERHAGHRDDMDGVGSFTHPSRTLYVGGIVKAAYKD
QREVEEVVRTQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFCKEAMSNQ
ALLGKETLNVKWASDDPNPVAQEAVARSNLDAAMLMMQQQGVSLQPTAFD
YPERYILPVPKKARVEGGGEGGGGAGWRTLIRMGSMKEGRENVREARSGR
RCSIQVDNVLVTAVEKEGMGEEGGLDGDRDRVGGGNEVGSQEEKESGAPR
PPAPSALEENK*
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mRNA from alignment at chr14:393233..395323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01210.2 ID=NO14G01210.2|Name=NO14G01210.2|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp|location=Sequence derived from alignment at chr14:393233..395323- (Nannochloropsis oceanica)
CATGGACAGGGCTTACTATTTCATCGTGTCTTGCAGTCTAGCGGGGGCCT
TTGGGCTCGACATTGATTGTTCCGGCTTCTACGTCCCACTATCCTACTTC
CTCTCATGGCGGCACCACGCGGCTTTGAGGACGTGACACGGCGGGATCTT
ACTGGTATTGCCACACTTGGGTATGTATCTACGTCTGCATTTGTATATTA
ATTATTTGAACGGGTCGCATGTGTCGCTGGCCGGCGTGCATTTATCCCCT
TTCTTCGCGCTTGCGCTCCACCACCCTGTACTTGCCGCCCAGCATTCCAA
CAAGAATACACCGCCCGAACGCCCTTCAATTATGTGTGCCTGCTTCGATA
CTGTCATCATTCCTTTCCTTTCCTCCCGTTCCCCCTCTGTCCATCGACTC
GAGTTTCCCATTTCCTACCCCACAACCACTCCCAACAGCGACCTCGGTGC
CTCTTACACCGTCTACGAACGCAACTGGGCGTGCCCGAAATGCAAATTCG
ACAACTATGCGTCCAAGCAAAAATGTAACCGCTGTCGGGCCGCTAAACCC
GAAGGCACCGAGCACATCCTTCCTTCCTCCCTCCCTTCCTCCTCCTCTGT
CCACGCCTGGCGGGAGACCGTGGACGTGACGTCACAACAACTGTACTACT
ACCACACCGAAACGGGAGAGGTCCGTTGGGATCGCCCTCCAGAGATGGGA
CAGGCGCCCATGGCCTCAGGATGGTACGGTCGAGGTGCCGCTGGAGGAAG
GGCTGCCCAACAGTATCAGCAGCAGAACGAGGAGTACCTCAAGAGGCCGG
CGAGGAAACAAAAGGCGTTTATAGAGGCAGGACGATCCGTGCTGGAGGGG
GCAAATGAGTACAACATCTGGTACGGAAAATACACGGGGGAGCACTGGAG
GCAGGGCAAGGGAAGAGACCCAGCTGAAACTAGGTGTGTGGTCAAGACAG
ACGCGGGATGGACCAAGGCGGATAAGATTGATAGTAAATCCAAGTTCTTC
TGCATCCATTTCGCCCGCGGTGGCTGTGCACGAGGGCACGAATGCCAATA
CTTCCATCGGATCCCGACGGTGGACGATGATAAGACGGCGGGGGAGTTGC
ATGATTGTTTCGGGAGGGAGCGACACGCGGGACACAGGGACGACATGGAC
GGCGTGGGTTCCTTCACCCACCCATCACGCACGCTGTATGTGGGGGGGAT
TGTGAAAGCGGCGTACAAGGACCAAAGGGAGGTAGAGGAGGTGGTAAGGA
CGCAGTTCGGGGAGTGGGGGGAGGTGGAGCACGTGAATTTCGTGCCTCGG
ATCTCGGCGGCTTTCGTCAGGTAAGGGAAGGAGGGAGGGAGGAAAGTCGT
GTCAGCAAGCAAGAGTTACATTCCCTCCTTCCCTCCTTCCCTCCCTCCCC
TTCCTAGGTTTCGCCTTCGCAGCAATTGCGAATTCTGCAAGGAAGCAATG
AGCAATCAAGCATTACTCGGAAAAGAAACGCTGAATGTTAAGTGGGCCTC
TGACGACCCCAACCCCGTCGCGCAAGAAGCAGTCGCTCGTTCCAACCTCG
ACGCGGCCATGCTGATGATGCAGCAGCAAGGTGTGAGCTTACAACCGACT
GCCTTTGATTACCCGGAGAGGTACATTCTGCCGGTGCCGAAAAAGGCCAG
GGTTGAGGGAGGGGGGGAGGGAGGGGGGGGGGCGGGATGGCGTACCCTGA
TACGGATGGGCAGTATGAAGGAAGGGCGGGAGAATGTGAGGGAAGCGAGG
AGTGGAAGGCGGTGTTCGATCCAAGGTATGGTGCGTATTACTATATGCAT
GTCAAAACGGGGGAGGTGACGTGGACGAAGCCGGAGGGGACGAGGGAGCA
AGGGAAGGAAGGCGTGACAGAAACGATGCGTGGTGATGCGGACGTCATTT
CTCCTCCTCCTCCTGCCGTAGTCGATAATGTTCTTGTTACTGCTGTGGAA
AAGGAGGGGATGGGCGAAGAGGGAGGGCTAGATGGAGATAGAGATAGAGT
TGGTGGGGGAAACGAGGTAGGAAGCCAGGAGGAGAAGGAATCAGGAGCAC
CTCGACCACCAGCGCCATCAGCACTGGAAGAAAACAAATGA
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Coding sequence (CDS) from alignment at chr14:393233..395323-

>NO14G01210.2 ID=NO14G01210.2|Name=NO14G01210.2|organism=Nannochloropsis oceanica|type=CDS|length=1686bp|location=Sequence derived from alignment at chr14:393233..395323- (Nannochloropsis oceanica)
ATGTATCTACGTCTGCATTTGTATATTAATTATTTGAACGGGTCGCATGT
GTCGCTGGCCGGCGTGCATTTATCCCCTTTCTTCGCGCTTGCGCTCCACC
ACCCTGTACTTGCCGCCCAGCATTCCAACAAGAATACACCGCCCGAACGC
CCTTCAATTATGTGTGCCTGCTTCGATACTGTCATCATTCCTTTCCTTTC
CTCCCGTTCCCCCTCTGTCCATCGACTCGAGTTTCCCATTTCCTACCCCA
CAACCACTCCCAACAGCGACCTCGGTGCCTCTTACACCGTCTACGAACGC
AACTGGGCGTGCCCGAAATGCAAATTCGACAACTATGCGTCCAAGCAAAA
ATGTAACCGCTGTCGGGCCGCTAAACCCGAAGGCACCGAGCACATCCTTC
CTTCCTCCCTCCCTTCCTCCTCCTCTGTCCACGCCTGGCGGGAGACCGTG
GACGTGACGTCACAACAACTGTACTACTACCACACCGAAACGGGAGAGGT
CCGTTGGGATCGCCCTCCAGAGATGGGACAGGCGCCCATGGCCTCAGGAT
GGTACGGTCGAGGTGCCGCTGGAGGAAGGGCTGCCCAACAGTATCAGCAG
CAGAACGAGGAGTACCTCAAGAGGCCGGCGAGGAAACAAAAGGCGTTTAT
AGAGGCAGGACGATCCGTGCTGGAGGGGGCAAATGAGTACAACATCTGGT
ACGGAAAATACACGGGGGAGCACTGGAGGCAGGGCAAGGGAAGAGACCCA
GCTGAAACTAGGTGTGTGGTCAAGACAGACGCGGGATGGACCAAGGCGGA
TAAGATTGATAGTAAATCCAAGTTCTTCTGCATCCATTTCGCCCGCGGTG
GCTGTGCACGAGGGCACGAATGCCAATACTTCCATCGGATCCCGACGGTG
GACGATGATAAGACGGCGGGGGAGTTGCATGATTGTTTCGGGAGGGAGCG
ACACGCGGGACACAGGGACGACATGGACGGCGTGGGTTCCTTCACCCACC
CATCACGCACGCTGTATGTGGGGGGGATTGTGAAAGCGGCGTACAAGGAC
CAAAGGGAGGTAGAGGAGGTGGTAAGGACGCAGTTCGGGGAGTGGGGGGA
GGTGGAGCACGTGAATTTCGTGCCTCGGATCTCGGCGGCTTTCGTCAGGT
TTCGCCTTCGCAGCAATTGCGAATTCTGCAAGGAAGCAATGAGCAATCAA
GCATTACTCGGAAAAGAAACGCTGAATGTTAAGTGGGCCTCTGACGACCC
CAACCCCGTCGCGCAAGAAGCAGTCGCTCGTTCCAACCTCGACGCGGCCA
TGCTGATGATGCAGCAGCAAGGTGTGAGCTTACAACCGACTGCCTTTGAT
TACCCGGAGAGGTACATTCTGCCGGTGCCGAAAAAGGCCAGGGTTGAGGG
AGGGGGGGAGGGAGGGGGGGGGGCGGGATGGCGTACCCTGATACGGATGG
GCAGTATGAAGGAAGGGCGGGAGAATGTGAGGGAAGCGAGGAGTGGAAGG
CGGTGTTCGATCCAAGTCGATAATGTTCTTGTTACTGCTGTGGAAAAGGA
GGGGATGGGCGAAGAGGGAGGGCTAGATGGAGATAGAGATAGAGTTGGTG
GGGGAAACGAGGTAGGAAGCCAGGAGGAGAAGGAATCAGGAGCACCTCGA
CCACCAGCGCCATCAGCACTGGAAGAAAACAAATGA
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Synonyms
Publications