NO14G01130.1, NO14G01130.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G01130.1
Unique Name	NO14G01130.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3363
Alignment location	chr14:377660..381171 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:377660..381171 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO14G01130.1 vs.
Match: EWM24692.1 (hypothetical protein Naga_100076g6 [Nannochloropsis gaditana])

HSP 1 Score: 300.8 bits (769), Expect = 4.100e-78
Identity = 138/177 (77.97%), Postives = 157/177 (88.70%), Query Frame = 0

Query:   86 LTSLRAIEIVDGTTGQDEEDDTPAPTGTFAWFKKWWQKTAKIDRKKLAALGASALCSYGLVSNINYCGTLCASFIIFTKRYNVSPLAPGQWKTFLGVYGTLWVGMNFLRPLRVWLALGITPIFDKCVERIRERLNVKKSVALGITIFLVNICGTFSFLGTGLYLSSLYTGVPLFPPK 263
            L++LRA+EIVD T+ +D  ++ P  TGTF WF++WW+KTAKIDRKKLAALGASALCSYGLVSNINYCGTLCAS+IIFTK+YN+SP A GQWK FL VYGTLW  MNFLRPLRVW+ALG+TP F+K VE IR +LNVKKSVALGITIFLVN+CGTFSFLG GLYLSSLYTGVPL PP+
Sbjct:   87 LSALRAVEIVDDTSSEDRPEEAPEGTGTFIWFRRWWKKTAKIDRKKLAALGASALCSYGLVSNINYCGTLCASYIIFTKKYNISPFAAGQWKNFLAVYGTLWAAMNFLRPLRVWIALGVTPYFEKIVETIRTKLNVKKSVALGITIFLVNVCGTFSFLGAGLYLSSLYTGVPLIPPR 263

The following BLAST results are available for this feature:

BLAST of NO14G01130.1 vs.

BLAST of NO14G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24692.1	4.100e-78	77.97	hypothetical protein Naga_100076g6 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G01130	NO14G01130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G01130.1	NO14G01130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G01130.1.cds1	NO14G01130.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G01130.1.cds2	NO14G01130.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:377660..381171-
coding sequence from alignment at chr14:377660..381171-

mRNA sequence

>NO14G01130.1 ID=NO14G01130.1|Name=NO14G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=3363bp
TGCTTGATCAGCTTTGACGCGTACGTTGCCCCGGTGTATACTCTTTCACA
CTCAACATATCCGCTTCTTCCTTCCTTTTGTGTTTCTTTCTTTTATAAAG
TAAAACAATGGCGATATGACACACACGCACAGTTGGCTCCTGAACACTTT
TATGCCTTTGCCTTTGCCTTTGCCTTGCTAGTATAGCCCTCCCGCCGGCC
CATTCCTATTTCCAAAACGCATCCATCCATTCCCTTTTTCAGCCCGCGAT
CCCATCGACGGGAAATTTGCTTCCAAAAATGAGGCTATCGTCCCATCCCA
CGCATCTCCCTCCGACTCTTTGCATCCCGCCCACAATTGCCGCTTCCTAC
CCAACCTACTCTCACTATCCCACCCATCCCCACCCCCCACATACCCCGCT
ATCTCCTTCCTTCTAGTGCGTGTACAACGACGACACCTCATTCTTCACTT
TCAATTTGGGCCACTCCCCCTCCAGCGAATGCTGCCACTGCTCGGGAATG
GGCGTCTCAACCAGCTCCCCCTCTTCATTCTTGGGGTATTGAATATTCAT
CTCGCTGCTCTTGCTAGTGAGGAAACTTGTGCCCAACCCGTCCTTGCTCA
GCACCACGATTATCCCATCAGTTTTGTCAATGGCCACGGTAGGGACGTGT
TGTCGAACCTGAACCTTCACCCCCTGGCAGTTCACCACTTCTAACGAGGA
AAGCATCTCGTCGACCACAACCTGAGTCTTCTTGCATCCGTCCATGATAA
CGCTCTTTCCCTTCCCTTTTACGTCGATCACGCATGCACCACAGTTGTAG
ATGTAGACGGATTGCTTTTTGTCCTCAATTGAGATTGGGGGGGCTGAACG
GAGGGGTCGGTGTAGTGTTGGACGTTCCAGCGGAGTTGGGAAGAATCGTA
CGAGGAGGAAGGAGGCTTCTTCTGTGCGGCTTTGCAAGAAAAGGACGGGG
TGGAGGATGTGGAGGAGAAAGAGGAAGAGGAAGGTGCTGGCGTAGCAGCA
GCTGCGCTTTTGTTGAATTCCGGGCGCCAGGTTTGTTGGTCTTTGGAGAC
CTTCTTAAGGCCACTTGTGATGGACAAACCCTTGCCCAACTGACTCAACA
GACCCGCCCTTCCCCCTCCAGCCGGCTGCACCACTGCTGCTGGCGTCGCT
GCTGCTGCTGTTGTAGACGAAGAGGGGGGAGGGAGGGGGAGGCTGAGGAG
GAGGAGGGGGAGGAGGAGGATGAGGAAGCAGAGGAGGAGCCGGGGGTGTA
TGTGTCTATATCCACCCCTTGTGGATTCCACCCCACCCCTGTCAGATGGC
ATTCCTTGACGTAGCCCATCAATTCCACAACCAGCTTTTTATAGGCGTCG
ACAAACGTCACATGTTCAGGCGCGGTCTTCTTGTGCTGGATCCGAACTTT
ATTTCCCCAGAAGTCAGCGGCGCCGATGAAATTCTCTATGTAGTCACAGG
GAGCCGGCCGGACCACTACCCAGGTCAAGGCCTGCATGCCTTCTGCCACG
GCCTTGGCATGGTTTTCGAATTCATTCCGTTGAATCATTTTCTGTGCCGT
TTTGATGGCGGCTTGGGCGGGGGCGAGCTTGCTAATGATTTGGGTGTCGT
TTGCAGGGGCTTTGACGGCCGTGGCCATGACGAGGAAATCACGTTGGGCT
TCCCAGGCTTCCTTCACCACACCGCCCAGCTCTGTCGCTTGTCCGCCCAG
GGCGTTAGCAGCCTCAAGGAAGGGGTTGAGGGTCGCTTGCAGGTAGGCGT
CGTAGGCCCGGAGGGATTTGGGGAACTCCAGTTGGGTGGAGGGAGGAGGC
CGCGTAACGCCTCCATTTGAGGCGCATGCGCTGCCAATGCTGCTGCCGCT
GGCTTCGAGGACGCGTAGCCGAGTCGTGATGTTGGCGACCAAGGAGGAGA
GGTAGGCGTGCTCGTCTTGGACCGACATGGCTGCGAGCTTGTCGGGGAGG
GAGGGTGGAGGGCAAGAAAGCTGGCTTTGCTGTCTGATAATGAAAGGGTG
GCTGGTTAAAGATAGTGGAGGGCATGATTTGGACATTCCGCGACATCGAA
ATCATGCGCCAGCAGCACACACGCGCTCACACTCATGGTACACATACTTT
CTGTCCTCGTGCCCATACGAAGGCCAAGAAATCAGCGAGGGTGGGAGACG
ACCTGCTTCAAACCAAGACAACGCCCTGACGCTGCTGCACTCTCCTAAAC
CATCCCTACACAATACAACCAGAGCATATCTTCTGTCTGCCCATCTACGT
CGGTCACTCTCTCTCGCTGAGCCTACGCCCTGATTGACAAGCACAGACAA
ATGATGGCTTCATCATTACCACAACGCCTCCCCGGCCTCCTTGTAGTGTC
CCTCTTCTTCGCTCTTGTCACCGACGCACTTGTGTTGCCAGCATCTCTCT
CCTGCCGGCAGCCGACGCGCTTTACCGCTACCTCTGTTACGGGGACTAGA
CCACAAGCCTCGACTCTGTCATTGTCGTCCTCGTCCTCCTTTTCCTTCTC
CTTCCCCACGGCACTCTACCCCTCGTCTCTAAACTGCAAGAGCAGCAGCC
ATTCTCTAACCAGCCTGCGCGCCATTGAAATCGTCGATGGCACGACAGGA
CAAGACGAAGAAGATGACACGCCGGCACCTACAGGCACGTTTGCTTGGTT
CAAAAAGTGGTGGCAAAAGACCGCCAAAATCGACCGGAAGAAGCTCGCTG
CCCTCGGCGCCAGTGCCCTTTGTTCATACGGCCTAGTCAGCAACATCAAC
TACTGCGGCACCTTATGCGCATCTTTCATCATCTTCACCAAAAGATACAA
TGTATCGCCTCTCGCGCCTGGTCAATGGAAGACATTCCTGGGCGTGTACG
GTACACTGTGGGTAGGGATGAATTTCCTGAGACCCTTGCGGGTGTGGCTC
GCCCTCGGCATAACGCCCATCTTTGACAAGTGCGTGGAAAGGATCCGGGA
AAGGCTCAATGTAAAGAAGAGCGTGGCGCTGGGCATCACTATTTTTCTGG
TGAATATCTGTGGTACTTTCTCTTTCTTGGGCACCGGGTTGTATTTGAGT
TCGTTGTACACTGGCGTGCCGCTGTTTCCGCCTAAGCTATAGTAGCAGCA
GCAGCAGCAGCAGCAGTAGTAACAGATGTAGTCATAAAAATGCCGCTCGA
GCACGTTTCATACAAGTATGGTGATCTCTCGCGACAGAATCACACGCGTG
CGTGTGCGGGACGTGGCTTGGGGAGACCTAGGGCCAGCACCCAAGCGCAA
GCATACGCGCTAACCACATGAACCAAAACTAGAAAGAACAAAAGAGACGG
GAAATAACCCAACAAGAACGACACGAACTACAACAATCCCTTCATAGAAA
GCAGTGGCATTGG

protein sequence of NO14G01130.1

>NO14G01130.1-protein ID=NO14G01130.1-protein|Name=NO14G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MMASSLPQRLPGLLVVSLFFALVTDALVLPASLSCRQPTRFTATSVTGTR
PQASTLSLSSSSSFSFSFPTALYPSSLNCKSSSHSLTSLRAIEIVDGTTG
QDEEDDTPAPTGTFAWFKKWWQKTAKIDRKKLAALGASALCSYGLVSNIN
YCGTLCASFIIFTKRYNVSPLAPGQWKTFLGVYGTLWVGMNFLRPLRVWL
ALGITPIFDKCVERIRERLNVKKSVALGITIFLVNICGTFSFLGTGLYLS
SLYTGVPLFPPKL*

mRNA from alignment at chr14:377660..381171-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G01130.1 ID=NO14G01130.1|Name=NO14G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=3512bp|location=Sequence derived from alignment at chr14:377660..381171- (Nannochloropsis oceanica)
TGCTTGATCAGCTTTGACGCGTACGTTGCCCCGGTGTATACTCTTTCACA
CTCAACATATCCGCTTCTTCCTTCCTTTTGTGTTTCTTTCTTTTATAAAG
TAAAACAATGGCGATATGACACACACGCACAGTTGGCTCCTGAACACTTT
TATGCCTTTGCCTTTGCCTTTGCCTTGCTAGTATAGCCCTCCCGCCGGCC
CATTCCTATTTCCAAAACGCATCCATCCATTCCCTTTTTCAGCCCGCGAT
CCCATCGACGGGAAATTTGCTTCCAAAAATGAGGCTATCGTCCCATCCCA
CGCATCTCCCTCCGACTCTTTGCATCCCGCCCACAATTGCCGCTTCCTAC
CCAACCTACTCTCACTATCCCACCCATCCCCACCCCCCACATACCCCGCT
ATCTCCTTCCTTCTAGTGCGTGTACAACGACGACACCTCATTCTTCACTT
TCAATTTGGGCCACTCCCCCTCCAGCGAATGCTGCCACTGCTCGGGAATG
GGCGTCTCAACCAGCTCCCCCTCTTCATTCTTGGGGTATTGAATATTCAT
CTCGCTGCTCTTGCTAGTGAGGAAACTTGTGCCCAACCCGTCCTTGCTCA
GCACCACGATTATCCCATCAGTTTTGTCAATGGCCACGGTAGGGACGTGT
TGTCGAACCTGAACCTTCACCCCCTGGCAGTTCACCACTTCTAACGAGGA
AAGCATCTCGTCGACCACAACCTGAGTCTTCTTGCATCCGTCCATGATAA
CGCTCTTTCCCTTCCCTTTTACGTCGATCACGCATGCACCACAGTTGTAG
ATGTAGACGGATTGCTTTTTGTCCTCAATTGAGATTGGGGGGGCTGAACG
GAGGGGTCGGTGTAGTGTTGGACGTTCCAGCGGAGTTGGGAAGAATCGTA
CGAGGAGGAAGGAGGCTTCTTCTGTGCGGCTTTGCAAGAAAAGGACGGGG
TGGAGGATGTGGAGGAGAAAGAGGAAGAGGAAGGTGCTGGCGTAGCAGCA
GCTGCGCTTTTGTTGAATTCCGGGCGCCAGGTTTGTTGGTCTTTGGAGAC
CTTCTTAAGGCCACTTGTGATGGACAAACCCTTGCCCAACTGACTCAACA
GACCCGCCCTTCCCCCTCCAGCCGGCTGCACCACTGCTGCTGGCGTCGCT
GCTGCTGCTGTTGTAGACGAAGAGGGGGGAGGGAGGGGGAGGCTGAGGAG
GAGGAGGGGGAGGAGGAGGATGAGGAAGCAGAGGAGGAGCCGGGGGTGTA
TGTGTCTATATCCACCCCTTGTGGATTCCACCCCACCCCTGTCAGATGGC
ATTCCTTGACGTAGCCCATCAATTCCACAACCAGCTTTTTATAGGCGTCG
ACAAACGTCACATGTTCAGGCGCGGTCTTCTTGTGCTGGATCCGAACTTT
ATTTCCCCAGAAGTCAGCGGCGCCGATGAAATTCTCTATGTAGTCACAGG
GAGCCGGCCGGACCACTACCCAGGTCAAGGCCTGCATGCCTTCTGCCACG
GCCTTGGCATGGTTTTCGAATTCATTCCGTTGAATCATTTTCTGTGCCGT
TTTGATGGCGGCTTGGGCGGGGGCGAGCTTGCTAATGATTTGGGTGTCGT
TTGCAGGGGCTTTGACGGCCGTGGCCATGACGAGGAAATCACGTTGGGCT
TCCCAGGCTTCCTTCACCACACCGCCCAGCTCTGTCGCTTGTCCGCCCAG
GGCGTTAGCAGCCTCAAGGAAGGGGTTGAGGGTCGCTTGCAGGTAGGCGT
CGTAGGCCCGGAGGGATTTGGGGAACTCCAGTTGGGTGGAGGGAGGAGGC
CGCGTAACGCCTCCATTTGAGGCGCATGCGCTGCCAATGCTGCTGCCGCT
GGCTTCGAGGACGCGTAGCCGAGTCGTGATGTTGGCGACCAAGGAGGAGA
GGTAGGCGTGCTCGTCTTGGACCGACATGGCTGCGAGCTTGTCGGGGAGG
GAGGGTGGAGGGCAAGAAAGCTGGCTTTGCTGTCTGATAATGAAAGGGTG
GCTGGTTAAAGATAGTGGAGGGCATGATTTGGACATTCCGCGACATCGAA
ATCATGCGCCAGCAGCACACACGCGCTCACACTCATGGTACACATACTTT
CTGTCCTCGTGCCCATACGAAGGCCAAGAAATCAGCGAGGGTGGGAGACG
ACCTGCTTCAAACCAAGACAACGCCCTGACGCTGCTGCACTCTCCTAAAC
CATCCCTACACAATACAACCAGAGCATATCTTCTGTCTGCCCATCTACGT
CGGTCACTCTCTCTCGCTGAGCCTACGCCCTGATTGACAAGCACAGACAA
ATGATGGCTTCATCATTACCACAACGCCTCCCCGGCCTCCTTGTAGTGTC
CCTCTTCTTCGCTCTTGTCACCGACGCACTTGTGTTGCCAGCATCTCTCT
CCTGCCGGCAGCCGACGCGCTTTACCGCTACCTCTGTTACGGGGACTAGA
CCACAAGCCTCGACTCTGTCATTGTCGTCCTCGTCCTCCTTTTCCTTCTC
CTTCCCCACGGCACTCTACCCCTCGTCTCTAAACTGCAAGAGCAGCAGCC
ATTCTCTAACCAGCCTGCGCGCCATTGAAATCGTCGATGGCACGACAGGA
CAAGACGAAGAAGATGACACGCCGGCACCTACAGGCACGTTTGCTTGGTT
CAAAAAGTGGTGGCAAAAGACCGCCAAAATCGACCGGAAGAAGCTCGCTG
GTACGTCGTCCTCCTCTCCTGCCCTTCTTCCCTCCCTTCCTCTCTTCCTC
GTTCAATTCCCCTCCTCCAAGCCAACCATGAACATGTATCTCTTTTACAG
CCGACCCACTAACGTTTCCTCTTTCCCCTTCACCCGTCTATCCCTCCAGC
CCTCGGCGCCAGTGCCCTTTGTTCATACGGCCTAGTCAGCAACATCAACT
ACTGCGGCACCTTATGCGCATCTTTCATCATCTTCACCAAAAGATACAAT
GTATCGCCTCTCGCGCCTGGTCAATGGAAGACATTCCTGGGCGTGTACGG
TACACTGTGGGTAGGGATGAATTTCCTGAGACCCTTGCGGGTGTGGCTCG
CCCTCGGCATAACGCCCATCTTTGACAAGTGCGTGGAAAGGATCCGGGAA
AGGCTCAATGTAAAGAAGAGCGTGGCGCTGGGCATCACTATTTTTCTGGT
GAATATCTGTGGTACTTTCTCTTTCTTGGGCACCGGGTTGTATTTGAGTT
CGTTGTACACTGGCGTGCCGCTGTTTCCGCCTAAGCTATAGTAGCAGCAG
CAGCAGCAGCAGCAGTAGTAACAGATGTAGTCATAAAAATGCCGCTCGAG
CACGTTTCATACAAGTATGGTGATCTCTCGCGACAGAATCACACGCGTGC
GTGTGCGGGACGTGGCTTGGGGAGACCTAGGGCCAGCACCCAAGCGCAAG
CATACGCGCTAACCACATGAACCAAAACTAGAAAGAACAAAAGAGACGGG
AAATAACCCAACAAGAACGACACGAACTACAACAATCCCTTCATAGAAAG
CAGTGGCATTGG

Coding sequence (CDS) from alignment at chr14:377660..381171-

>NO14G01130.1 ID=NO14G01130.1|Name=NO14G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr14:377660..381171- (Nannochloropsis oceanica)
ATGATGGCTTCATCATTACCACAACGCCTCCCCGGCCTCCTTGTAGTGTC
CCTCTTCTTCGCTCTTGTCACCGACGCACTTGTGTTGCCAGCATCTCTCT
CCTGCCGGCAGCCGACGCGCTTTACCGCTACCTCTGTTACGGGGACTAGA
CCACAAGCCTCGACTCTGTCATTGTCGTCCTCGTCCTCCTTTTCCTTCTC
CTTCCCCACGGCACTCTACCCCTCGTCTCTAAACTGCAAGAGCAGCAGCC
ATTCTCTAACCAGCCTGCGCGCCATTGAAATCGTCGATGGCACGACAGGA
CAAGACGAAGAAGATGACACGCCGGCACCTACAGGCACGTTTGCTTGGTT
CAAAAAGTGGTGGCAAAAGACCGCCAAAATCGACCGGAAGAAGCTCGCTG
CCCTCGGCGCCAGTGCCCTTTGTTCATACGGCCTAGTCAGCAACATCAAC
TACTGCGGCACCTTATGCGCATCTTTCATCATCTTCACCAAAAGATACAA
TGTATCGCCTCTCGCGCCTGGTCAATGGAAGACATTCCTGGGCGTGTACG
GTACACTGTGGGTAGGGATGAATTTCCTGAGACCCTTGCGGGTGTGGCTC
GCCCTCGGCATAACGCCCATCTTTGACAAGTGCGTGGAAAGGATCCGGGA
AAGGCTCAATGTAAAGAAGAGCGTGGCGCTGGGCATCACTATTTTTCTGG
TGAATATCTGTGGTACTTTCTCTTTCTTGGGCACCGGGTTGTATTTGAGT
TCGTTGTACACTGGCGTGCCGCTGTTTCCGCCTAAGCTATAG

Synonyms

Publications