NO14G01070.1, NO14G01070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01070.1
Unique NameNO14G01070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1764
Alignment locationchr14:359976..362808 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:359976..362808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01070.1 vs.
Match: EWM24709.1 (Oligosaccharyl transferase complex, subunit OST3/OST6 [Nannochloropsis gaditana])

HSP 1 Score: 465.7 bits (1197), Expect = 1.500e-127
Identity = 221/402 (54.98%), Postives = 296/402 (73.63%), Query Frame = 0 
Query:   22 WASLSLLLLLLPSF------AKTAAKSSSDSAGSSSTNGAFQKYYKKMASSPSHVIELDDGKFEALLLTPGSKRSFPVVIYFTATNPKYGCQPCHVLGEYFASLADSYVLANARKPAEKQSPPVIFAAADVDTAPTTIHQYMQLDTVPHVFFFPANEAPELPPQPAMRLSLEGGGSALLEELEERIGLVLTPIPDIETTIDVAVFFALGLALLLYLVLDQWEWTKSVVFSRGIWLALSYLVFMTATGGMIYCLIRTPPPYGVYLQKVQLFMNRDSSDQFVAEGLVMGSIQLCAGLSFVGMYWFASQKRNGIAQWLGINLSLAAALYFLHRLFAFYATKTRWYDVNSTLDPNLSTFLFGNMKKGSGLFRRVLRVTQLWLYEYKDWGVFRRTASSLMAKYVKKM 418
            W   SL+  ++ +F      +    K S+ + G+ ++  AFQKYY KM  SPSHV+ELDD KF+A+L+ PG KRSFPVVI FTA NPKYGCQ CH++G  F  +A++Y+  NAR+P++ Q PP+IFA ADV+TAP  +H+  QL TVPH+FFFPA++A  LP +    LS+  GG+A+ EELE+RIGL L  +P++  T+  AV FA+  A+  Y ++DQW WTK++ F R +WL  SYLVF  ATGGMIYC+IR PPP+G+  QKV+L   RD+SD FV EGL+MG +QL AGL+FV  Y+FAS++R  + QW+GINLSLAAALYFLH++F FY+ K RWY +   +DP ++ FLFGNMKKGSGLFRR++R+TQLWLYE+KD   FRR+A S + KY+K++
Sbjct:    9 WGHKSLVSRIIVAFFVFSLPSAQTVKPSTATEGTRASTTAFQKYYAKMVESPSHVLELDDSKFDAMLIKPGQKRSFPVVILFTAANPKYGCQACHIVGNEFEGMANTYLQRNARRPSDNQLPPLIFARADVETAPAVVHEKFQLQTVPHLFFFPAHQALSLPARNLDELSVTSGGTAIAEELEDRIGLTLKRVPNVRATVKGAVLFAVLAAVAAYFLMDQWSWTKTLPFRRPLWLCFSYLVFAIATGGMIYCIIRRPPPFGITQQKVKLISTRDTSDMFVFEGLLMGFLQLAAGLAFVLTYFFASRRRQTLLQWIGINLSLAAALYFLHQIFGFYSEKARWYRIQHIVDPMMANFLFGNMKKGSGLFRRLVRLTQLWLYEFKDLVSFRRSAMSYLGKYIKRL 410
The following BLAST results are available for this feature:
BLAST of NO14G01070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24709.11.500e-12754.98Oligosaccharyl transferase complex, subunit OST3/O... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01070NO14G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01070.1NO14G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01070.1.cds1NO14G01070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01070.1.cds2NO14G01070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01070.1.cds3NO14G01070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01070.1.cds4NO14G01070.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01070.1.cds5NO14G01070.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01070.1 ID=NO14G01070.1|Name=NO14G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp
GCCTCTTTCAAAGAAGAAAGGAAGGCGCTATGGCAAGCGAAGACAAGGAC
ATGTATTTGAGGATTTTAGTGAAAGGGCAACAGAGGCTGTGATGGGGCAA
GGAGTAGTATTGCACATCCAATAGACTGGGATTTCTTGCCTCTACATGGA
AATAACAAGACGTTTCAAGCATTATCTTGACTCCTTTCATTCAAACCATT
CCCGCACGGCGACAGGCTTGCACGTAAACAAACCATAAGGCCTCTCGCCT
GTTGGTTCCCTCCCAGACAAGGTAGACGACATGACCTTGACGGCATTATT
GTCTAGGCGACGGGCAGCCTCAAGGCAGAGTTTCGCTGTCTTCTGGGCTA
GCCTGTCCCTGCTCCTGCTCCTTCTTCCTTCCTTCGCCAAGACGGCGGCC
AAGAGCAGCAGCGACAGTGCTGGCAGTAGCAGTACGAATGGCGCCTTTCA
AAAGTATTACAAGAAGATGGCCTCCTCGCCCTCCCATGTCATTGAGCTAG
ACGACGGTAAATTCGAGGCATTACTTCTCACGCCCGGGTCCAAACGCAGT
TTTCCTGTCGTGATTTATTTCACGGCTACCAACCCCAAATATGGATGTCA
ACCATGCCACGTCCTCGGCGAGTACTTCGCCAGCCTTGCTGATTCCTACG
TGCTGGCCAATGCTCGCAAACCCGCAGAAAAGCAATCGCCCCCCGTCATC
TTCGCTGCGGCCGACGTGGACACTGCCCCGACCACCATCCACCAGTACAT
GCAGCTCGATACAGTGCCCCACGTTTTCTTCTTCCCGGCGAACGAGGCTC
CCGAACTACCGCCCCAGCCGGCGATGCGGTTGAGTCTTGAGGGTGGGGGA
AGTGCGCTTTTGGAGGAGTTGGAAGAGAGGATCGGGTTGGTATTAACCCC
GATCCCGGATATCGAGACGACGATCGACGTGGCGGTATTCTTTGCGTTGG
GGCTGGCGCTGTTGCTTTATCTGGTGTTGGACCAGTGGGAGTGGACAAAA
AGCGTTGTATTCTCGAGGGGCATCTGGCTGGCGTTGTCGTACCTGGTGTT
CATGACGGCCACGGGGGGAATGATATATTGCTTGATTCGAACCCCGCCGC
CTTACGGGGTGTATCTGCAAAAGGTGCAGTTGTTTATGAACCGAGACAGC
AGCGACCAATTCGTGGCGGAGGGCTTGGTGATGGGCAGCATTCAGCTGTG
TGCGGGGCTGTCGTTCGTGGGCATGTACTGGTTTGCAAGCCAGAAGAGGA
ATGGGATCGCGCAGTGGCTAGGCATCAATCTCTCCCTCGCCGCTGCCCTC
TACTTTCTCCATCGTCTTTTCGCCTTTTATGCCACTAAGACGCGGTGGTA
TGACGTCAATTCCACCCTCGACCCCAACCTTTCTACCTTCCTCTTCGGGA
ACATGAAGAAGGGCAGTGGGTTGTTTCGTCGCGTCTTGCGCGTGACGCAA
TTGTGGCTGTACGAGTACAAGGACTGGGGGGTATTCCGACGCACGGCCTC
GTCATTAATGGCCAAATACGTGAAGAAAATGACTGGGAGGTAAACAGTGA
TGGATTGGGAAGAAGAGTGGGAAGGAAGTGTATCATCAGTAGTTTTGTGA
TGAGTGAACGAAGCAAGCAGGGCATGTGCTTAAGAAATCACTTTCAAAAA
GAAATGAGGAAAAGCCGCTGTCGTATGAGTATAATTAGAAAGAATCAGAA
AGGAGCAAAGACAAAACAGAAAAGCAAAAATTATCCAAAGAAAGAAAACG
ATGGAAATTCGGAC
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protein sequence of NO14G01070.1

>NO14G01070.1-protein ID=NO14G01070.1-protein|Name=NO14G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MTLTALLSRRRAASRQSFAVFWASLSLLLLLLPSFAKTAAKSSSDSAGSS
STNGAFQKYYKKMASSPSHVIELDDGKFEALLLTPGSKRSFPVVIYFTAT
NPKYGCQPCHVLGEYFASLADSYVLANARKPAEKQSPPVIFAAADVDTAP
TTIHQYMQLDTVPHVFFFPANEAPELPPQPAMRLSLEGGGSALLEELEER
IGLVLTPIPDIETTIDVAVFFALGLALLLYLVLDQWEWTKSVVFSRGIWL
ALSYLVFMTATGGMIYCLIRTPPPYGVYLQKVQLFMNRDSSDQFVAEGLV
MGSIQLCAGLSFVGMYWFASQKRNGIAQWLGINLSLAAALYFLHRLFAFY
ATKTRWYDVNSTLDPNLSTFLFGNMKKGSGLFRRVLRVTQLWLYEYKDWG
VFRRTASSLMAKYVKKMTGR*
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mRNA from alignment at chr14:359976..362808+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01070.1 ID=NO14G01070.1|Name=NO14G01070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2833bp|location=Sequence derived from alignment at chr14:359976..362808+ (Nannochloropsis oceanica)
GCCTCTTTCAAAGAAGAAAGGAAGGCGCTATGGCAAGCGAAGACAAGGAC
ATGTATTTGAGGATTTTAGTGAAAGGGCAACAGAGGCTGTGATGGGGCAA
GGAGTAGTATTGCACATCCAATAGACTGGGATTTCTTGCCTCTACATGGA
AATAACAAGACGTTTCAAGCATTATCTTGACTCCTTTCATTCAAACCATT
CCCGCACGGCGACAGGCTTGCACGTAAACAAACCATAAGGCCTCTCGCCT
GTTGGTTCCCTCCCAGACAAGGTAGACGACATGACCTTGACGGCATTATT
GTCTAGGCGACGGGCAGCCTCAAGGCAGAGTTTCGCTGTCTTCTGGGCTA
GCCTGTCCCTGCTCCTGCTCCTTCTTCCTTCCTTCGCCAAGACGGCGGCC
AAGAGCAGCAGCGACAGTGCTGGCAGTAGCAGTACGAATGGCGCCTTTCA
AAAGGTAAGCAGGACGCATAAAACTTCAACGATATTGTGTGAGCGCGCGC
GTGCAACGCCGGTCAGCGCATAAGAGACGCAGGACCTAAGGGTATTACTT
CTCTGACTCCTCCTCCTCTTCCTTCTCCCTAATTCTGGCATTTGTCGGGC
CGAGCAATCATTACAGCATGATATTCTGAAGACTTACATGTACATATGTT
TATATTACTACGTCTATTTTTTCTTTTGGGCCCTCCATTCTTATCTTTAC
CATGCTCTTTTTCGCCTCTTCGCCCCCCCCCCCCAACAGTATTACAAGAA
GATGGCCTCCTCGCCCTCCCATGTCATTGAGCTAGACGACGGTAAATTCG
AGGCATTACTTCTCACGCCCGGGTCCAAACGCAGTTTTCCTGTCGTGATT
TATTTCACGGCTACCAACCCCAAATATGGATGTCAACCATGCCAGTAAGT
AGCGTCGAGTGAGGGGAGGGAGGGAGGAAGGGAGGGAGAGAGGGAGGGAG
GAACAGTGTGTAATACTTGATTTCTGGTTCATGTGACGCCCTCATGAACG
TGTGGTGCTGCTCTGTTATGGCATCCTCCAAAGATTCTGCCCAGAAATGT
TGACATCATGTGAGCCTTGCCAGTCCGAGCGGAGGAAGGGGAGGGAGAAA
GGGGATGGAGGGAGGGAGAGAAGACAAGGGAAAAAGAGAAAAGGAGTAAG
TGGGACCGGAGTACTTTCCTTTCATCCATTGTCCTTCAGCCCGCACACAA
GCTGCCCTCTTTGCCGGTCTGTGCTATCGATGACGTCACAGACCCCGAGA
CTCATCTCCAATACATGCACAACTCACTCTCCTCCCTCCCTCACTCCCTT
CTCCCTTCCTCAGCGTCCTCGGCGAGTACTTCGCCAGCCTTGCTGATTCC
TACGTGCTGGCCAATGCTCGCAAACCCGCAGAAAAGCAATCGCCCCCCGT
CATCTTCGCTGCGGCCGACGTGGACACTGCCCCGACCACCATCCACCAGT
ACATGCAGCTCGATACAGTGCCCCACGTTTTCTTCTTCCCGGCGAACGAG
GCTCCCGAACTACCGCCCCAGCCGGCGATGCGGTTGAGTCTTGAGGGTGG
GGGAAGTGCGCTTTTGGAGGAGTTGGAAGAGAGGATCGGGTTGGTATTAA
CCCCGATCCCGGATATCGAGACGACGATCGACGTGGCGGTATTCTTTGCG
TTGGGGCTGGCGCTGTTGCTTTATCTGGTGTTGGACCAGTGGGAGTGGAC
AAAAAGCGTTGTATTCTCGAGGGGCATCTGGCTGGCGTTGTCGTACCTGG
TGTTCATGACGGCCACGGGGGGAATGATATATTGCTTGATTCGAACCCCG
CCGCCTTACGGGGTGTATCTGCAAAAGGTGCAGTTGTTTATGAACCGAGA
CAGCAGCGACCAATTCGTGGCGGAGGGCTTGGTGATGGGCAGCATTCAGC
TGTGTGCGGGGCTGTCGTTCGTGGGCATGTACTGGTTTGCAAGCCAGAAG
AGGAATGGGATCGCGCAGTGGCTAGGTACTTACCCCCCTTTCCACCCTCC
CCCCTTCCCACCCTCCCTTCATCAAGACTTGACAAGCATCTCTCTGCCTT
AAAACATTTTTATCATTCAGACGCCCATCCCTCATGTTATTCTGATCCCA
CCCTTCCTCCCACTCTTCCTCCCCTCCTATTTCCCTTTTCCCCCCCAAGG
CATCAATCTCTCCCTCGCCGCTGCCCTCTACTTTCTCCATCGTCTTTTCG
CCTTTTATGCCACTAAGACGCGGTGGTATGACGTCAATTCCACCCTCGAC
CCCAACGTATGTAGCCTGCCCTCCCTTCCTCCCTCCCTCCCTCCCTTCCT
CCCTCCGTCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CATCGTTTTTTTCCTGCTCCTTCACCTCGCGTACCATCATCATCCTTCCA
CTTACTCAATCCTTCTTGGCTGCCTCGATCTCGTCTTCTTTCTACAGCTT
TCTACCTTCCTCTTCGGGAACATGAAGAAGGGCAGTGGGTTGTTTCGTCG
CGTCTTGCGCGTGACGCAATTGTGGCTGTACGAGTACAAGGACTGGGGGG
TATTCCGACGCACGGCCTCGTCATTAATGGCCAAATACGTGAAGAAAATG
ACTGGGAGGTAAACAGTGATGGATTGGGAAGAAGAGTGGGAAGGAAGTGT
ATCATCAGTAGTTTTGTGATGAGTGAACGAAGCAAGCAGGGCATGTGCTT
AAGAAATCACTTTCAAAAAGAAATGAGGAAAAGCCGCTGTCGTATGAGTA
TAATTAGAAAGAATCAGAAAGGAGCAAAGACAAAACAGAAAAGCAAAAAT
TATCCAAAGAAAGAAAACGATGGAAATTCGGAC
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Coding sequence (CDS) from alignment at chr14:359976..362808+

>NO14G01070.1 ID=NO14G01070.1|Name=NO14G01070.1|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at chr14:359976..362808+ (Nannochloropsis oceanica)
ATGACCTTGACGGCATTATTGTCTAGGCGACGGGCAGCCTCAAGGCAGAG
TTTCGCTGTCTTCTGGGCTAGCCTGTCCCTGCTCCTGCTCCTTCTTCCTT
CCTTCGCCAAGACGGCGGCCAAGAGCAGCAGCGACAGTGCTGGCAGTAGC
AGTACGAATGGCGCCTTTCAAAAGTATTACAAGAAGATGGCCTCCTCGCC
CTCCCATGTCATTGAGCTAGACGACGGTAAATTCGAGGCATTACTTCTCA
CGCCCGGGTCCAAACGCAGTTTTCCTGTCGTGATTTATTTCACGGCTACC
AACCCCAAATATGGATGTCAACCATGCCACGTCCTCGGCGAGTACTTCGC
CAGCCTTGCTGATTCCTACGTGCTGGCCAATGCTCGCAAACCCGCAGAAA
AGCAATCGCCCCCCGTCATCTTCGCTGCGGCCGACGTGGACACTGCCCCG
ACCACCATCCACCAGTACATGCAGCTCGATACAGTGCCCCACGTTTTCTT
CTTCCCGGCGAACGAGGCTCCCGAACTACCGCCCCAGCCGGCGATGCGGT
TGAGTCTTGAGGGTGGGGGAAGTGCGCTTTTGGAGGAGTTGGAAGAGAGG
ATCGGGTTGGTATTAACCCCGATCCCGGATATCGAGACGACGATCGACGT
GGCGGTATTCTTTGCGTTGGGGCTGGCGCTGTTGCTTTATCTGGTGTTGG
ACCAGTGGGAGTGGACAAAAAGCGTTGTATTCTCGAGGGGCATCTGGCTG
GCGTTGTCGTACCTGGTGTTCATGACGGCCACGGGGGGAATGATATATTG
CTTGATTCGAACCCCGCCGCCTTACGGGGTGTATCTGCAAAAGGTGCAGT
TGTTTATGAACCGAGACAGCAGCGACCAATTCGTGGCGGAGGGCTTGGTG
ATGGGCAGCATTCAGCTGTGTGCGGGGCTGTCGTTCGTGGGCATGTACTG
GTTTGCAAGCCAGAAGAGGAATGGGATCGCGCAGTGGCTAGGCATCAATC
TCTCCCTCGCCGCTGCCCTCTACTTTCTCCATCGTCTTTTCGCCTTTTAT
GCCACTAAGACGCGGTGGTATGACGTCAATTCCACCCTCGACCCCAACCT
TTCTACCTTCCTCTTCGGGAACATGAAGAAGGGCAGTGGGTTGTTTCGTC
GCGTCTTGCGCGTGACGCAATTGTGGCTGTACGAGTACAAGGACTGGGGG
GTATTCCGACGCACGGCCTCGTCATTAATGGCCAAATACGTGAAGAAAAT
GACTGGGAGGTAA
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Synonyms
Publications