NO14G01020.1, NO14G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01020.1
Unique NameNO14G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length849
Alignment locationchr14:338980..339828 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:338980..339828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01020.1 vs.
Match: KXZ49816.1 (hypothetical protein GPECTOR_19g267 [Gonium pectorale])

HSP 1 Score: 98.2 bits (243), Expect = 4.300e-17
Identity = 63/169 (37.28%), Postives = 88/169 (52.07%), Query Frame = 0 
Query:   10 QAHVSKAQSSMTRLTYEAHHPSLDKQRVGAQGMHKIDQVGRNILRKDKPIQCLEAVMVAAHLTTRL-PVHRLPLSFTTRVLQTGQTHKHIVLALTSESHQRWGAMGMSRSSELMDKALIFASFSALVEEYQRSYSMCGHILESVLVGLPFSSKASCTLPVVWQALNIDL 178
            Q  ++  Q  +  L Y  H P        A+   +I +  R  LR   PI+CLEAV + A LT     + RLPL+F + V   GQT++HIVL +     ++WGA+G+SR  ELMDK L++ S + LV EY+ +Y    H L  V  GLP         PV W+ L + L
Sbjct:   71 QQRLTAVQQVINSLQYN-HTPGYYYNVSKARPFSRIMETARETLRSALPIKCLEAVFLGALLTAGWHDLDRLPLAFKSTV--QGQTYRHIVLVVYHAPSRKWGALGLSRRPELMDKDLVYDSLADLVSEYKAAYERWWHALIRVYAGLPLEHDTFYQGPVCWRFLTLSL 236
The following BLAST results are available for this feature:
BLAST of NO14G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KXZ49816.14.300e-1737.28hypothetical protein GPECTOR_19g267 [Gonium pector... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01020NO14G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01020.1NO14G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01020.1.cds1NO14G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01020.1 ID=NO14G01020.1|Name=NO14G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
ATGCCATTGCGTGCACTAGATGAGATTCAAGCCCACGTCTCGAAGGCGCA
GTCCAGCATGACCCGTTTGACTTACGAGGCCCACCATCCGTCCCTCGACA
AGCAGCGAGTCGGGGCACAAGGCATGCACAAGATAGACCAGGTGGGACGC
AATATATTAAGAAAGGACAAGCCGATACAATGCCTTGAAGCTGTTATGGT
GGCGGCGCACCTTACGACCAGATTACCCGTTCACCGACTGCCTCTAAGTT
TCACGACGCGTGTGCTTCAGACGGGCCAGACACACAAGCACATTGTCCTT
GCGCTGACCTCCGAGAGCCATCAGCGATGGGGAGCTATGGGAATGAGCCG
ATCTTCAGAGCTCATGGACAAAGCTTTGATATTCGCGTCCTTCTCGGCAC
TGGTGGAGGAATACCAACGTTCCTATTCTATGTGCGGGCACATCCTCGAA
TCGGTTCTCGTGGGGCTGCCATTCTCTTCGAAGGCATCCTGCACACTACC
TGTTGTCTGGCAGGCCCTCAACATCGACTTGAAAGCACAGGGCGAAGACA
AGAGAAACACACCGTCTTCCGTTCCCTCTACTTGGAAAGCAGTGCTCGAT
CATTACGGGCAAAGCGTGCAGGCCTTGCTTGCGTTTCACCAACGGCACCC
AGACAGCAACCTGCCAAGTAGCCGTCTTTATGCGTGGCTTCAAGGCAAGA
AGGCACGGTTATGTTTCAAAGACTTGCTTATAATAAAAAACGGGGGGAAA
GGAGACCGGGGGGATGGTTGTGGTCGAATCAGCACGGGGAGAGGGAAGGG
CGGGAAGAGGAAGAGAGCGTGGCATGTGCCTTCCCCCTCGGGTGCATGA
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protein sequence of NO14G01020.1

>NO14G01020.1-protein ID=NO14G01020.1-protein|Name=NO14G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MPLRALDEIQAHVSKAQSSMTRLTYEAHHPSLDKQRVGAQGMHKIDQVGR
NILRKDKPIQCLEAVMVAAHLTTRLPVHRLPLSFTTRVLQTGQTHKHIVL
ALTSESHQRWGAMGMSRSSELMDKALIFASFSALVEEYQRSYSMCGHILE
SVLVGLPFSSKASCTLPVVWQALNIDLKAQGEDKRNTPSSVPSTWKAVLD
HYGQSVQALLAFHQRHPDSNLPSSRLYAWLQGKKARLCFKDLLIIKNGGK
GDRGDGCGRISTGRGKGGKRKRAWHVPSPSGA*
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mRNA from alignment at chr14:338980..339828+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01020.1 ID=NO14G01020.1|Name=NO14G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp|location=Sequence derived from alignment at chr14:338980..339828+ (Nannochloropsis oceanica)
ATGCCATTGCGTGCACTAGATGAGATTCAAGCCCACGTCTCGAAGGCGCA
GTCCAGCATGACCCGTTTGACTTACGAGGCCCACCATCCGTCCCTCGACA
AGCAGCGAGTCGGGGCACAAGGCATGCACAAGATAGACCAGGTGGGACGC
AATATATTAAGAAAGGACAAGCCGATACAATGCCTTGAAGCTGTTATGGT
GGCGGCGCACCTTACGACCAGATTACCCGTTCACCGACTGCCTCTAAGTT
TCACGACGCGTGTGCTTCAGACGGGCCAGACACACAAGCACATTGTCCTT
GCGCTGACCTCCGAGAGCCATCAGCGATGGGGAGCTATGGGAATGAGCCG
ATCTTCAGAGCTCATGGACAAAGCTTTGATATTCGCGTCCTTCTCGGCAC
TGGTGGAGGAATACCAACGTTCCTATTCTATGTGCGGGCACATCCTCGAA
TCGGTTCTCGTGGGGCTGCCATTCTCTTCGAAGGCATCCTGCACACTACC
TGTTGTCTGGCAGGCCCTCAACATCGACTTGAAAGCACAGGGCGAAGACA
AGAGAAACACACCGTCTTCCGTTCCCTCTACTTGGAAAGCAGTGCTCGAT
CATTACGGGCAAAGCGTGCAGGCCTTGCTTGCGTTTCACCAACGGCACCC
AGACAGCAACCTGCCAAGTAGCCGTCTTTATGCGTGGCTTCAAGGCAAGA
AGGCACGGTTATGTTTCAAAGACTTGCTTATAATAAAAAACGGGGGGAAA
GGAGACCGGGGGGATGGTTGTGGTCGAATCAGCACGGGGAGAGGGAAGGG
CGGGAAGAGGAAGAGAGCGTGGCATGTGCCTTCCCCCTCGGGTGCATGA
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Coding sequence (CDS) from alignment at chr14:338980..339828+

>NO14G01020.1 ID=NO14G01020.1|Name=NO14G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr14:338980..339828+ (Nannochloropsis oceanica)
ATGCCATTGCGTGCACTAGATGAGATTCAAGCCCACGTCTCGAAGGCGCA
GTCCAGCATGACCCGTTTGACTTACGAGGCCCACCATCCGTCCCTCGACA
AGCAGCGAGTCGGGGCACAAGGCATGCACAAGATAGACCAGGTGGGACGC
AATATATTAAGAAAGGACAAGCCGATACAATGCCTTGAAGCTGTTATGGT
GGCGGCGCACCTTACGACCAGATTACCCGTTCACCGACTGCCTCTAAGTT
TCACGACGCGTGTGCTTCAGACGGGCCAGACACACAAGCACATTGTCCTT
GCGCTGACCTCCGAGAGCCATCAGCGATGGGGAGCTATGGGAATGAGCCG
ATCTTCAGAGCTCATGGACAAAGCTTTGATATTCGCGTCCTTCTCGGCAC
TGGTGGAGGAATACCAACGTTCCTATTCTATGTGCGGGCACATCCTCGAA
TCGGTTCTCGTGGGGCTGCCATTCTCTTCGAAGGCATCCTGCACACTACC
TGTTGTCTGGCAGGCCCTCAACATCGACTTGAAAGCACAGGGCGAAGACA
AGAGAAACACACCGTCTTCCGTTCCCTCTACTTGGAAAGCAGTGCTCGAT
CATTACGGGCAAAGCGTGCAGGCCTTGCTTGCGTTTCACCAACGGCACCC
AGACAGCAACCTGCCAAGTAGCCGTCTTTATGCGTGGCTTCAAGGCAAGA
AGGCACGGTTATGTTTCAAAGACTTGCTTATAATAAAAAACGGGGGGAAA
GGAGACCGGGGGGATGGTTGTGGTCGAATCAGCACGGGGAGAGGGAAGGG
CGGGAAGAGGAAGAGAGCGTGGCATGTGCCTTCCCCCTCGGGTGCATGA
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Synonyms
Publications