NO14G01000.1, NO14G01000.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G01000.1
Unique Name	NO14G01000.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1719
Alignment location	chr14:335253..337165 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:335253..337165 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO14G01000.1 vs.
Match: EWM24694.1 (protein of unknown function DUF2088 [Nannochloropsis gaditana])

HSP 1 Score: 812.0 bits (2096), Expect = 1.200e-231
Identity = 406/506 (80.24%), Postives = 445/506 (87.94%), Query Frame = 0

Query:    1 MVLHYEWGSTIEALSDEDLRTAVRSVFDQLGAKQNVLIVPPDFTRFNSKAGVLTQHAYEYYGEALKDVLPALGTHDPVSGHQRERMFGAVPESLFRVHDWRNDVVTIGHVPAEMVRAASDGKLDQPWPAQLNKLMVEGGHDLVLSIGQVVPHEVLGMANYNKNLFVGIGGAEAINLSHFIGAVYGMERMMGVADNPLRRVLNHASEKFLAGTYPLLYILTVIGPSLENPRELKTRGLFIGDDAECFFKAAALSIQVNFTLLEKPVKKVVAYLDEEEFLSTWLGNKAIYRTRMLIEDGGELLVLAPGVKKFGEDEAIDALIRKYGYRTTPELMSLLKANDELQHNLSAVAHLVHGSSEGRFTITYATNPDEGGLTQGEVEGVGYGWRDYREAIKLYDPHTMTQGVNVM---RKEGGEGGGGEEEEVYFVQAPALGLWAAKTRFQRDLDGGGGGGKVGTGGGEGTAGLEGGKE---EERIPATASTLSPVRERPTKRTKGGEGEEKEE 501
            MVL+YEWGST EAL+D DLRTAVRSVFD+LG K+ VL+VPPDFTRFNSKAG+LTQH YEYYGEALKD+LPALGTHDPVSGHQRERMFGAVPESLFR+HDWRNDV+TIGHVPA+MVRAASDGKLDQPWPAQLNKLMVEGGHDL+LSIGQVVPHEVLGMANYNKNLFVGIGGAEAINLSHFIGAVYGMERMMGVADNPLRRVLNHASE+FLAG YPL+YILTVIGPS E+PR L+TRGL+IGDDAECFFKAAALSIQVNFTLLEKPV+KVVA+LD+EEF STWLGNKAIYRTRMLIEDGGELLVLAPGV+KFGEDEAIDALIRKYGYRTTPELM+ L  NDEL+ +LSA+AHLVHGSSE RF ITYAT+P +GGLT+ EVEGVGY WRDYREAI+ +DP TMT GVN +   R+EG EG   EE+EVYFVQAPALGLWAAKTRFQR+L   G       GG EG  G EGG E    +     +  +SP RE P+KR+KG +   KEE
Sbjct:    1 MVLYYEWGSTTEALADNDLRTAVRSVFDRLGEKKKVLVVPPDFTRFNSKAGLLTQHTYEYYGEALKDILPALGTHDPVSGHQRERMFGAVPESLFRIHDWRNDVITIGHVPADMVRAASDGKLDQPWPAQLNKLMVEGGHDLILSIGQVVPHEVLGMANYNKNLFVGIGGAEAINLSHFIGAVYGMERMMGVADNPLRRVLNHASEQFLAGVYPLIYILTVIGPSAEDPRVLRTRGLYIGDDAECFFKAAALSIQVNFTLLEKPVRKVVAFLDKEEFQSTWLGNKAIYRTRMLIEDGGELLVLAPGVRKFGEDEAIDALIRKYGYRTTPELMAFLDGNDELRGSLSAIAHLVHGSSENRFKITYATDPSQGGLTKEEVEGVGYAWRDYREAIREFDPQTMTAGVNRVQKKREEGSEGRKEEEDEVYFVQAPALGLWAAKTRFQRELGQEGRNEGGAEGGAEG--GAEGGAEGATRKVGEGPSGAVSPTREPPSKRSKGLDDAGKEE 504

The following BLAST results are available for this feature:

BLAST of NO14G01000.1 vs.

BLAST of NO14G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24694.1	1.200e-231	80.24	protein of unknown function DUF2088 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G01000	NO14G01000	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G01000.1	NO14G01000.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G01000.1.cds1	NO14G01000.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G01000.1.cds2	NO14G01000.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:335253..337165-
coding sequence from alignment at chr14:335253..337165-

mRNA sequence

>NO14G01000.1 ID=NO14G01000.1|Name=NO14G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp
ATGGTCCTTCACTACGAATGGGGCAGCACCATCGAAGCCTTGAGCGACGA
GGACCTGCGCACGGCCGTACGGAGCGTTTTTGACCAGCTGGGGGCGAAGC
AAAACGTCCTCATCGTGCCCCCGGACTTCACTCGCTTCAATTCCAAGGCA
GGAGTGCTGACTCAGCATGCCTACGAGTACTATGGCGAGGCTTTGAAGGA
TGTCCTTCCTGCCTTGGGGACGCATGACCCCGTCTCGGGACACCAGCGCG
AGCGAATGTTTGGAGCAGTGCCCGAGAGTTTGTTTCGTGTGCATGACTGG
CGCAACGACGTGGTTACCATTGGTCATGTCCCTGCCGAGATGGTACGGGC
CGCAAGCGATGGCAAATTGGACCAGCCTTGGCCGGCCCAATTGAATAAGC
TGATGGTAGAGGGAGGGCATGACCTGGTCTTGTCCATCGGGCAGGTGGTG
CCACACGAAGTGCTGGGCATGGCCAATTACAATAAGAACTTGTTCGTGGG
GATTGGCGGAGCGGAAGCGATAAATTTGAGTCATTTCATTGGGGCGGTGT
ATGGGATGGAGAGGATGATGGGGGTGGCAGATAATCCGTTGCGGCGTGTG
TTGAACCATGCTTCCGAAAAGTTCCTGGCTGGGACTTACCCCCTCTTGTA
TATCCTCACCGTCATCGGACCTTCGCTGGAAAACCCTCGAGAGTTAAAGA
CTCGTGGTTTATTCATCGGTGACGATGCCGAGTGCTTTTTCAAGGCGGCC
GCGTTGTCGATTCAGGTTAATTTTACACTGTTGGAAAAACCGGTAAAGAA
GGTCGTGGCCTATCTGGATGAGGAGGAGTTTCTATCGACTTGGCTAGGGA
ATAAGGCTATCTATAGGACTCGAATGCTCATCGAGGATGGAGGGGAGTTG
TTGGTGTTGGCGCCGGGGGTGAAAAAGTTTGGGGAGGACGAGGCGATTGA
CGCGTTGATCCGCAAGTACGGTTATCGGACCACGCCGGAGCTGATGTCCC
TCCTCAAAGCCAATGATGAGCTCCAGCACAACCTCTCTGCGGTCGCTCAC
CTCGTTCACGGCTCCAGCGAAGGCCGTTTCACGATCACATACGCCACTAA
TCCCGACGAGGGGGGCCTGACCCAGGGGGAGGTAGAAGGTGTGGGGTATG
GATGGAGGGACTACAGGGAAGCGATCAAACTTTATGACCCTCACACTATG
ACACAAGGAGTGAATGTCATGCGGAAGGAGGGAGGGGAAGGAGGCGGAGG
GGAGGAGGAAGAGGTGTATTTTGTTCAGGCTCCCGCGTTGGGCTTGTGGG
CGGCCAAAACGAGGTTTCAACGAGATTTGGATGGTGGCGGTGGTGGTGGA
AAAGTAGGAACAGGAGGAGGAGAAGGAACAGCGGGATTGGAGGGAGGAAA
GGAGGAAGAGAGGATACCTGCCACGGCCTCGACGTTGTCGCCTGTGCGAG
AGCGGCCGACCAAGAGAACCAAGGGCGGAGAGGGGGAAGAGAAGGAGGAA
GAGGGAGGGGGGGGGGTCGTGTCGGTTCTAGTGGCACTGCTGTGTAGAAA
GAGGCAGAAGCGCGAGGAGGAGCGTAGGGAAGGAGGGGAGGAGGCGGACG
GACGGAAGGAGGGTGCTTTGATTCACTGTGCATCGGCTAGGCTTCCTCTT
CTCTTCTTCCTCTTTTTCGTCATTCCGAAGTATGACACCCGTTCCCACGG
CCGGAAGAAGGAAAAATGA

protein sequence of NO14G01000.1

>NO14G01000.1-protein ID=NO14G01000.1-protein|Name=NO14G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MVLHYEWGSTIEALSDEDLRTAVRSVFDQLGAKQNVLIVPPDFTRFNSKA
GVLTQHAYEYYGEALKDVLPALGTHDPVSGHQRERMFGAVPESLFRVHDW
RNDVVTIGHVPAEMVRAASDGKLDQPWPAQLNKLMVEGGHDLVLSIGQVV
PHEVLGMANYNKNLFVGIGGAEAINLSHFIGAVYGMERMMGVADNPLRRV
LNHASEKFLAGTYPLLYILTVIGPSLENPRELKTRGLFIGDDAECFFKAA
ALSIQVNFTLLEKPVKKVVAYLDEEEFLSTWLGNKAIYRTRMLIEDGGEL
LVLAPGVKKFGEDEAIDALIRKYGYRTTPELMSLLKANDELQHNLSAVAH
LVHGSSEGRFTITYATNPDEGGLTQGEVEGVGYGWRDYREAIKLYDPHTM
TQGVNVMRKEGGEGGGGEEEEVYFVQAPALGLWAAKTRFQRDLDGGGGGG
KVGTGGGEGTAGLEGGKEEERIPATASTLSPVRERPTKRTKGGEGEEKEE
EGGGGVVSVLVALLCRKRQKREEERREGGEEADGRKEGALIHCASARLPL
LFFLFFVIPKYDTRSHGRKKEK*

mRNA from alignment at chr14:335253..337165-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G01000.1 ID=NO14G01000.1|Name=NO14G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp|location=Sequence derived from alignment at chr14:335253..337165- (Nannochloropsis oceanica)
ATGGTCCTTCACTACGAATGGGGCAGCACCATCGAAGCCTTGAGCGACGA
GGACCTGCGCACGGCCGTACGGAGCGTTTTTGACCAGCTGGGGGCGAAGC
AAAACGTCCTCATCGTGCCCCCGGACTTCACTCGCTTCAATTCCAAGGCA
GGAGTGCTGACTCAGCATGCCTACGAGTACTATGGCGAGGCTTTGAAGGA
TGTCCTTCCTGCCTTGGGGACGCATGACCCCGTCTCGGGACACCAGCGCG
AGCGAATGTTTGGAGCAGTGCCCGAGAGTTTGTTTCGTGTGCATGACTGG
CGCAACGACGTGGTTACCATTGGTCATGTCCCTGCCGAGATGGTACGGGC
CGCAAGCGATGGCAAATTGGACCAGCCTTGGCCGGCCCAATTGAATAAGC
TGATGGTAGAGGGAGGGCATGACCTGGTCTTGTCCATCGGGCAGGTGGTG
CCACACGAAGTGCTGGGCATGGCCAATTACAATAAGAACTTGTTCGTGGG
GATTGGCGGAGCGGAAGCGATAAATTTGAGTCATTTCATTGGGGCGGTGT
ATGGGATGGAGAGGATGATGGGGGTGGCAGATAATCCGTTGCGGCGTGTG
TTGAACCATGCTTCCGAAAAGTTCCTGGCTGGGACTTACCCCCTCTTGTA
TATCCTCACCGTCATCGGACCTTCGCTGGAAAACCCTCGAGAGTTAAAGA
CTCGTGGTTTATTCATCGGTGACGATGCCGAGTGCTTTTTCAAGGCGGCC
GCGTTGTCGATTCAGGTTAATTTTACACTGTTGGAAAAACCGGTAAAGAA
GGTCGTGGCCTATCTGGATGAGGAGGAGTTTCTATCGACTTGGCTAGGGA
ATAAGGCTATCTATAGGACTCGAATGCTCATCGAGGATGGAGGGGAGTTG
TTGGTGTTGGCGCCGGGGGTGAAAAAGTTTGGGGAGGACGAGGCGATTGA
CGCGTTGATCCGGTAAATGCAAGGGAGGGGTGAAGGAAGGGTGGGAGGGT
AGAGGAGTAAAAAGAAAGGGTTTGTGGGCCTTAAAATACCGATCGCTTTT
CCGATCATCCATGTAAACGATACTGAGTTACGTGCATTTAATCATACCTC
CCTCCCTCCCTTTTCCTCTTCCTTCCTTTTTGTTTCCCTTTCTCCCCATC
CTCTAGCAAGTACGGTTATCGGACCACGCCGGAGCTGATGTCCCTCCTCA
AAGCCAATGATGAGCTCCAGCACAACCTCTCTGCGGTCGCTCACCTCGTT
CACGGCTCCAGCGAAGGCCGTTTCACGATCACATACGCCACTAATCCCGA
CGAGGGGGGCCTGACCCAGGGGGAGGTAGAAGGTGTGGGGTATGGATGGA
GGGACTACAGGGAAGCGATCAAACTTTATGACCCTCACACTATGACACAA
GGAGTGAATGTCATGCGGAAGGAGGGAGGGGAAGGAGGCGGAGGGGAGGA
GGAAGAGGTGTATTTTGTTCAGGCTCCCGCGTTGGGCTTGTGGGCGGCCA
AAACGAGGTTTCAACGAGATTTGGATGGTGGCGGTGGTGGTGGAAAAGTA
GGAACAGGAGGAGGAGAAGGAACAGCGGGATTGGAGGGAGGAAAGGAGGA
AGAGAGGATACCTGCCACGGCCTCGACGTTGTCGCCTGTGCGAGAGCGGC
CGACCAAGAGAACCAAGGGCGGAGAGGGGGAAGAGAAGGAGGAAGAGGGA
GGGGGGGGGGTCGTGTCGGTTCTAGTGGCACTGCTGTGTAGAAAGAGGCA
GAAGCGCGAGGAGGAGCGTAGGGAAGGAGGGGAGGAGGCGGACGGACGGA
AGGAGGGTGCTTTGATTCACTGTGCATCGGCTAGGCTTCCTCTTCTCTTC
TTCCTCTTTTTCGTCATTCCGAAGTATGACACCCGTTCCCACGGCCGGAA
GAAGGAAAAATGA

Coding sequence (CDS) from alignment at chr14:335253..337165-

>NO14G01000.1 ID=NO14G01000.1|Name=NO14G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr14:335253..337165- (Nannochloropsis oceanica)
ATGGTCCTTCACTACGAATGGGGCAGCACCATCGAAGCCTTGAGCGACGA
GGACCTGCGCACGGCCGTACGGAGCGTTTTTGACCAGCTGGGGGCGAAGC
AAAACGTCCTCATCGTGCCCCCGGACTTCACTCGCTTCAATTCCAAGGCA
GGAGTGCTGACTCAGCATGCCTACGAGTACTATGGCGAGGCTTTGAAGGA
TGTCCTTCCTGCCTTGGGGACGCATGACCCCGTCTCGGGACACCAGCGCG
AGCGAATGTTTGGAGCAGTGCCCGAGAGTTTGTTTCGTGTGCATGACTGG
CGCAACGACGTGGTTACCATTGGTCATGTCCCTGCCGAGATGGTACGGGC
CGCAAGCGATGGCAAATTGGACCAGCCTTGGCCGGCCCAATTGAATAAGC
TGATGGTAGAGGGAGGGCATGACCTGGTCTTGTCCATCGGGCAGGTGGTG
CCACACGAAGTGCTGGGCATGGCCAATTACAATAAGAACTTGTTCGTGGG
GATTGGCGGAGCGGAAGCGATAAATTTGAGTCATTTCATTGGGGCGGTGT
ATGGGATGGAGAGGATGATGGGGGTGGCAGATAATCCGTTGCGGCGTGTG
TTGAACCATGCTTCCGAAAAGTTCCTGGCTGGGACTTACCCCCTCTTGTA
TATCCTCACCGTCATCGGACCTTCGCTGGAAAACCCTCGAGAGTTAAAGA
CTCGTGGTTTATTCATCGGTGACGATGCCGAGTGCTTTTTCAAGGCGGCC
GCGTTGTCGATTCAGGTTAATTTTACACTGTTGGAAAAACCGGTAAAGAA
GGTCGTGGCCTATCTGGATGAGGAGGAGTTTCTATCGACTTGGCTAGGGA
ATAAGGCTATCTATAGGACTCGAATGCTCATCGAGGATGGAGGGGAGTTG
TTGGTGTTGGCGCCGGGGGTGAAAAAGTTTGGGGAGGACGAGGCGATTGA
CGCGTTGATCCGCAAGTACGGTTATCGGACCACGCCGGAGCTGATGTCCC
TCCTCAAAGCCAATGATGAGCTCCAGCACAACCTCTCTGCGGTCGCTCAC
CTCGTTCACGGCTCCAGCGAAGGCCGTTTCACGATCACATACGCCACTAA
TCCCGACGAGGGGGGCCTGACCCAGGGGGAGGTAGAAGGTGTGGGGTATG
GATGGAGGGACTACAGGGAAGCGATCAAACTTTATGACCCTCACACTATG
ACACAAGGAGTGAATGTCATGCGGAAGGAGGGAGGGGAAGGAGGCGGAGG
GGAGGAGGAAGAGGTGTATTTTGTTCAGGCTCCCGCGTTGGGCTTGTGGG
CGGCCAAAACGAGGTTTCAACGAGATTTGGATGGTGGCGGTGGTGGTGGA
AAAGTAGGAACAGGAGGAGGAGAAGGAACAGCGGGATTGGAGGGAGGAAA
GGAGGAAGAGAGGATACCTGCCACGGCCTCGACGTTGTCGCCTGTGCGAG
AGCGGCCGACCAAGAGAACCAAGGGCGGAGAGGGGGAAGAGAAGGAGGAA
GAGGGAGGGGGGGGGGTCGTGTCGGTTCTAGTGGCACTGCTGTGTAGAAA
GAGGCAGAAGCGCGAGGAGGAGCGTAGGGAAGGAGGGGAGGAGGCGGACG
GACGGAAGGAGGGTGCTTTGATTCACTGTGCATCGGCTAGGCTTCCTCTT
CTCTTCTTCCTCTTTTTCGTCATTCCGAAGTATGACACCCGTTCCCACGG
CCGGAAGAAGGAAAAATGA

Synonyms

Publications