NO14G00990.1, NO14G00990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00990.1
Unique NameNO14G00990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1024
Alignment locationchr14:333696..335055 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:333696..335055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00990.1 vs.
Match: EWM24741.1 (nascent polypeptide-associated complex subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 256.1 bits (653), Expect = 8.400e-65
Identity = 151/188 (80.32%), Postives = 160/188 (85.11%), Query Frame = 0 
Query:    5 QEPKVVEESEEEEEEESEEGSDEEEEAGGKGGKQSRSEKKSRKAVQKLGMKPVPGIARVTVKKSKNILFVIGQPDVFKSPVSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPMSMPQGAMAAAAAAAGGGGGIPSGVVEEEGDVDETGVEAKDIELVMSQAGCSRARAVGALKKNEGDIVNAIMELTI 193
            + PKV EE  EEEEEE E   + EE   G+GGKQSRSEKKSRKAVQKLGMKP+PGIARVTVKKSKNILFVIGQPDV+KSP SDTYIVFGEAKLEDLGAQAQSAAAAQFSREP  MPQG         GGGGG  + VVEEEG+VDETGVEAKDIELVMSQA CSRARAVGALKKN+GDIVNAIMELT+
Sbjct:   34 ENPKVEEEGSEEEEEEEESEEEGEETGAGRGGKQSRSEKKSRKAVQKLGMKPLPGIARVTVKKSKNILFVIGQPDVYKSPFSDTYIVFGEAKLEDLGAQAQSAAAAQFSREPTGMPQG------LGGGGGGGAGAPVVEEEGEVDETGVEAKDIELVMSQAACSRARAVGALKKNDGDIVNAIMELTV 215
The following BLAST results are available for this feature:
BLAST of NO14G00990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24741.18.400e-6580.32nascent polypeptide-associated complex subunit alp... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00990NO14G00990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00990.1NO14G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00990.1.cds1NO14G00990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00990.1.cds2NO14G00990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00990.1 ID=NO14G00990.1|Name=NO14G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1024bp
TGGACCGAGCGGCTGCGAAGCAATGTGGTGGTGGTGATGAAAACGCGCGC
TCCTTCCACTTCTGTGCTCGTGACCGAGGAATATGCGTACGCTCACGTCT
CGGTAGGCCTCTTAAGGGGTCGCGTGTGCATGCCAGTAGAACGCCCCGGC
CCCGGTTACGCGTTATCGTCGCTTTTATTAGCCTCCCCTCCCCTGTGCCC
GTGCCTAGGTTCTTCTCTCCTTCGCTGGGATACTCTCTTAAGTTGGACAC
CTGCAAACACTAACCACAACCCTCCACCCCCCCTTCACCGCACGCTAAAC
AACGACAGTACACACTAGGAAGACAACACAGAAAATCATGGCCAAGGAGC
AAGAGCCCAAGGTGGTGGAGGAGAGCGAAGAGGAGGAGGAGGAGGAGTCG
GAGGAGGGCTCCGATGAGGAAGAAGAGGCAGGTGGCAAGGGTGGCAAGCA
AAGCCGCAGCGAGAAGAAGAGCCGAAAGGCCGTCCAGAAGCTGGGCATGA
AACCAGTCCCTGGCATTGCCCGCGTCACGGTCAAGAAGAGCAAGAACATC
TTGTTCGTCATCGGTCAGCCTGACGTCTTTAAGTCCCCTGTCTCGGACAC
TTATATCGTGTTTGGTGAGGCCAAGCTCGAGGACCTGGGAGCTCAGGCCC
AAAGCGCTGCGGCCGCGCAGTTCTCCCGTGAGCCCATGTCTATGCCTCAG
GGTGCAATGGCGGCGGCGGCAGCTGCTGCTGGGGGTGGAGGGGGGATCCC
CTCGGGCGTAGTAGAGGAGGAAGGGGATGTAGACGAAACGGGGGTGGAAG
CCAAGGATATTGAGCTGGTCATGAGCCAAGCTGGGTGCTCGCGGGCGAGG
GCCGTGGGGGCATTGAAGAAGAACGAGGGGGATATCGTCAATGCCATCAT
GGAGCTGACAATTTAAGACGAATGTGAACCCGGCGAGCGCGAGGAGGATG
GGGGGAGGGAGGGGGAGGGAGAGTTAGGGAGAGCAAAAGAAGGAAACGAG
AGCAAAGAAAGGGGTCGGCGATTG
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protein sequence of NO14G00990.1

>NO14G00990.1-protein ID=NO14G00990.1-protein|Name=NO14G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MAKEQEPKVVEESEEEEEEESEEGSDEEEEAGGKGGKQSRSEKKSRKAVQ
KLGMKPVPGIARVTVKKSKNILFVIGQPDVFKSPVSDTYIVFGEAKLEDL
GAQAQSAAAAQFSREPMSMPQGAMAAAAAAAGGGGGIPSGVVEEEGDVDE
TGVEAKDIELVMSQAGCSRARAVGALKKNEGDIVNAIMELTI*
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mRNA from alignment at chr14:333696..335055+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00990.1 ID=NO14G00990.1|Name=NO14G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1360bp|location=Sequence derived from alignment at chr14:333696..335055+ (Nannochloropsis oceanica)
TGGACCGAGCGGCTGCGAAGCAATGTGGTGGTGGTGATGAAAACGCGCGC
TCCTTCCACTTCTGTGCTCGTGACCGAGGAATATGCGTACGCTCACGTCT
CGGTAGGCCTCTTAAGGGGTCGCGTGTGCATGCCAGTAGAACGCCCCGGC
CCCGGTTACGCGTTATCGTCGCTTTTATTAGCCTCCCCTCCCCTGTGCCC
GTGCCTAGGTTCTTCTCTCCTTCGCTGGGATACTCTCTTAAGTTGGACAC
CTGCAAACACTAACCACAACCCTCCACCCCCCCTTCACCGCACGCTAAAC
AACGACAGTACACACTAGGAAGACAACACAGAAAATCATGGCCAAGGAGC
AAGAGCCCAAGGTGGTGGAGGAGAGCGAAGAGGAGGAGGAGGAGGAGTCG
GAGGAGGGCTCCGATGAGGAAGAAGAGGCAGGTGGCAAGGGTGGCAAGCA
AAGCCGCAGCGAGAAGAAGAGCCGAAAGGCCGTCCAGAAGCTGGTACGTC
GTGAATAGAGAGAGGGAAAGGGGAAATTAAATGCGGAGTGCTTGGGTGTT
CAAGAGAGGCGGAGATGGGGATTCAGGAGGTCTGAAGGGCAGAGAGAAGG
GGAAAGGACATGTACCTTGCGTGGATTTTGTCCTTCCTTTGAGGTAGAGA
TGTTTGGTGGTTGACCTGCCTAGCCCTCCTCCTATTCATCACATATTTCG
TGTCTCGTATCTGCATGTTGTCTAGCTCGGTCGTACCAAATTTCGCCTTC
CATTCACGCTCCCTCCCTTTCTCCCTTTCCTCCCTCCCTTTCTTCCCTCC
CTCCCTTCATACCCTCCCTTGTACATCAGGGCATGAAACCAGTCCCTGGC
ATTGCCCGCGTCACGGTCAAGAAGAGCAAGAACATCTTGTTCGTCATCGG
TCAGCCTGACGTCTTTAAGTCCCCTGTCTCGGACACTTATATCGTGTTTG
GTGAGGCCAAGCTCGAGGACCTGGGAGCTCAGGCCCAAAGCGCTGCGGCC
GCGCAGTTCTCCCGTGAGCCCATGTCTATGCCTCAGGGTGCAATGGCGGC
GGCGGCAGCTGCTGCTGGGGGTGGAGGGGGGATCCCCTCGGGCGTAGTAG
AGGAGGAAGGGGATGTAGACGAAACGGGGGTGGAAGCCAAGGATATTGAG
CTGGTCATGAGCCAAGCTGGGTGCTCGCGGGCGAGGGCCGTGGGGGCATT
GAAGAAGAACGAGGGGGATATCGTCAATGCCATCATGGAGCTGACAATTT
AAGACGAATGTGAACCCGGCGAGCGCGAGGAGGATGGGGGGAGGGAGGGG
GAGGGAGAGTTAGGGAGAGCAAAAGAAGGAAACGAGAGCAAAGAAAGGGG
TCGGCGATTG
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Coding sequence (CDS) from alignment at chr14:333696..335055+

>NO14G00990.1 ID=NO14G00990.1|Name=NO14G00990.1|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at chr14:333696..335055+ (Nannochloropsis oceanica)
ATGGCCAAGGAGCAAGAGCCCAAGGTGGTGGAGGAGAGCGAAGAGGAGGA
GGAGGAGGAGTCGGAGGAGGGCTCCGATGAGGAAGAAGAGGCAGGTGGCA
AGGGTGGCAAGCAAAGCCGCAGCGAGAAGAAGAGCCGAAAGGCCGTCCAG
AAGCTGGGCATGAAACCAGTCCCTGGCATTGCCCGCGTCACGGTCAAGAA
GAGCAAGAACATCTTGTTCGTCATCGGTCAGCCTGACGTCTTTAAGTCCC
CTGTCTCGGACACTTATATCGTGTTTGGTGAGGCCAAGCTCGAGGACCTG
GGAGCTCAGGCCCAAAGCGCTGCGGCCGCGCAGTTCTCCCGTGAGCCCAT
GTCTATGCCTCAGGGTGCAATGGCGGCGGCGGCAGCTGCTGCTGGGGGTG
GAGGGGGGATCCCCTCGGGCGTAGTAGAGGAGGAAGGGGATGTAGACGAA
ACGGGGGTGGAAGCCAAGGATATTGAGCTGGTCATGAGCCAAGCTGGGTG
CTCGCGGGCGAGGGCCGTGGGGGCATTGAAGAAGAACGAGGGGGATATCG
TCAATGCCATCATGGAGCTGACAATTTAA
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Synonyms
Publications