NO14G00930.2, NO14G00930.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00930.2
Unique NameNO14G00930.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2230
Alignment locationchr14:318678..321457 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:318678..321457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00930.2 vs.
Match: XP_005853446.1 (hypothetical protein NGA_0179202 [Nannochloropsis gaditana CCMP526]; EKU22912.1 hypothetical protein NGA_0179202 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 382.9 bits (982), Expect = 1.000e-102
Identity = 216/340 (63.53%), Postives = 245/340 (72.06%), Query Frame = 0 
Query:    1 MYSRSLQRSLALAACVTVSGEFAARVHRQQQQQQEESDHPYHLQHH---VLLHLPSSTASSLSTTASAPSLASFFLSSPSPAFCSAT-------AIPEYHQVPLPPTDASDTQAVISRMRKYLAAPSLDDVGKFKKEKAGVKIYTVKEGSIPDPGEGGTKTGLPVARIGEAVIKAPLDQVATLWWVFNGRILWDKANTLASEVVEEYGKNCRLVYIKGAPKPMISSRDFVFVSHKIPASDVGGRVGSQAFLQTNAATALPENSGAVRGNINSVVLLDSLDAYTTRVRYVCEIGPNGWLPNLVRREEGREGGREGGLSVEGGLEGGEAGSDKGGGEGGRVD 331
            MY+RSL RSLALAA VTV+G FAARV+RQQ+++ EE+  P  LQHH   +LL  P+     +      P L SFFLS   PA C+A         IPE+HQVP P TD +DT +++ RM+KY    SL++V KFKKEKAGVKIYTVKEGSIPDP  GG KTGLPVARIGEAVI APL+QVATLWWVFNGRILWDK NTLASEVVEEY KN RLVYIKG PKPMISSRDFVFVSHK+PA D+GG  G+QAF+QTNAA  LPENSGAVRGNINS++LL+ +D YTTRVRYVCEI P GWLP +    E       G L V       EA   K G   GR D
Sbjct:    1 MYNRSLHRSLALAASVTVTGAFAARVYRQQEEE-EEAGRPASLQHHHNSLLLQSPAPLTKHIHEPV--PCLPSFFLSPRPPAACAAAPAPGLPAGIPEFHQVPQPATDPADTDSIVFRMQKYFTTASLEEVAKFKKEKAGVKIYTVKEGSIPDPAIGGRKTGLPVARIGEAVINAPLEQVATLWWVFNGRILWDKVNTLASEVVEEY-KNARLVYIKGTPKPMISSRDFVFVSHKVPAGDLGGSFGAQAFVQTNAANTLPENSGAVRGNINSIILLEPVDGYTTRVRYVCEIEPKGWLPTMA--VEAAADDLPGVLGVMKAHLESEATGGKEGRRRGRAD 334
The following BLAST results are available for this feature:
BLAST of NO14G00930.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853446.11.000e-10263.53hypothetical protein NGA_0179202 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00930NO14G00930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00930.2NO14G00930.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00930.2.cds1NO14G00930.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00930.2.cds2NO14G00930.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00930.2.cds3NO14G00930.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00930.2 ID=NO14G00930.2|Name=NO14G00930.2|organism=Nannochloropsis oceanica|type=mRNA|length=2230bp
ATACACTTCACTCGTCCTCGTTGCTTCCACAAATCACTTTCTCCCTCTTC
AACTACTAAAGTTCCGCAGAACACTTCCACTCACAAATCCCACACAAAGC
TCCACACAAAACCGCAGCCAAACCCACCAAGGACAAGAATGTACAGCCGC
TCCCTGCAACGTTCTCTTGCCCTTGCAGCATGCGTTACGGTCAGCGGCGA
GTTTGCCGCCCGCGTGCACCGCCAGCAACAACAGCAACAGGAGGAAAGCG
ACCATCCCTACCACCTTCAACATCACGTTCTCCTCCACCTCCCTTCCTCC
ACCGCCTCCTCCTTGTCCACCACCGCCTCCGCCCCATCGCTCGCCTCCTT
TTTTCTTTCCTCTCCGTCGCCTGCCTTTTGCTCCGCTACCGCGATCCCGG
AATACCATCAAGTCCCCCTCCCCCCTACGGATGCCAGCGACACGCAAGCC
GTGATTTCCCGTATGAGAAAGTATCTGGCTGCCCCCTCGCTCGATGACGT
CGGGAAGTTCAAGAAAGAGAAGGCTGGGGTAAAGATTTACACGGTCAAGG
AAGGATCGATCCCGGATCCTGGGGAGGGAGGGACGAAGACTGGCCTGCCT
GTGGCGAGGATTGGGGAGGCGGTTATCAAGGCGCCGTTAGACCAGGTGGC
CACGCTATGGTGGGTGTTCAATGGCCGCATTCTTTGGGACAAGGCGAATA
CTCTTGCTTCGGAGGTGGTGGAGGAGTATGGGAAGAACTGCCGTCTGGTC
TACATCAAGGGGGCTCCGAAGCCGATGATTAGCTCGCGGGACTTTGTGTT
TGTCAGCCACAAGATCCCTGCCAGTGACGTGGGTGGGCGTGTGGGCTCCC
AGGCCTTCCTACAGACCAACGCTGCCACGGCCCTCCCTGAGAACAGCGGC
GCCGTGCGCGGGAACATCAACAGTGTGGTGCTCCTGGATAGCCTGGATGC
TTATACCACCCGCGTGCGGTATGTGTGTGAGATTGGGCCTAATGGCTGGC
TGCCCAACTTGGTGAGAAGGGAGGAGGGAAGGGAGGGAGGGAGGGAGGGA
GGGTTGAGTGTGGAAGGTGGACTTGAAGGAGGGGAGGCAGGTAGCGATAA
AGGGGGAGGGGAAGGAGGACGAGTCGATTGATTCATATTTATATTCTTTC
TCCTTCTCCCTCTTGATCTCTCTGTCGGCGTTTCTCGTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTCTCACCCAACCACCCACAT
CCTACCCATATAATATATCGTATATCGCAAACCCATGTACATCCACCTCC
ACCTCCACCCGCACCCCTATCCACATACACCTACACATATACCCTTACTC
CCATCTATTAACCCACTCACACAGGCGGTGGAGGCCGCGGCGGACGACTT
GCCAGGTGTGCTGGGTGTGATGAAGGCGCACTTGGAGTCAGCGGCAGCCT
CAGGTGAGTGAGCCGAGGTGGGAGGGAGGGATGGAAGGAATAAGAGAAGA
AGGAATAATAAAAGCGGAGCAGGGGCACACACGGAGATGGAAGGAAAGGG
AGGGGAGGGTAAGATGGCATTAAAATATAGGAGGAAAATATGATATGCCG
CATGTCTCTGTCTGCGTCCTTCCCCTAATGTATCCATCTCTTTTCCCGTC
TCTGTTCTCCCATCTCATTCTGTACTCTTCCCTCCCCTCCCCCCTCTTGT
TCCCTTCCTCACAAGCTTAGAGGATCCCGAGGCACTGGCCCGACGGAGGG
AGAGCATGGCAAGGTCTGACCTCGCGCATCCTCTCCTCGTCGACAGCGTC
ACGGCCAGCAGGGAGGATTTACTCGCCTTACGCACCCTTCTCCGTGCCAA
ATTAGAAGAAGCCAAACGGGACGAAAAGAAAATGAAATTGGACTTGGGAG
ACTTGAGAAAGAAGATTCAGGGAGATTTGAAGAAGGTGGAGGCACGCCTT
AGGACCGCGTGAGGAGAATGGAGGGAGGGGAGGAGGGAGGAAATGAAGAA
GGAGGGAGGGAGGGAGAGAGGGATGGGAGGGTGTATCATTTTGATTTTGG
CGTGAGAGGACACACACACTTTTGAGAGATGTTTCGATATAATCCAGCGA
ACGATACATCAATTTTGATGTGCGTTGGAAATGAGGGGAGAACCACGAAA
GAAGGAAGGAAATGAAAGACAGAAAGGCGGAGTTAGAGAGGGGAGACAGT
GCAATGAAGTGCCCCCCCCCCGGATAAAAT
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protein sequence of NO14G00930.2

>NO14G00930.2-protein ID=NO14G00930.2-protein|Name=NO14G00930.2|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MYSRSLQRSLALAACVTVSGEFAARVHRQQQQQQEESDHPYHLQHHVLLH
LPSSTASSLSTTASAPSLASFFLSSPSPAFCSATAIPEYHQVPLPPTDAS
DTQAVISRMRKYLAAPSLDDVGKFKKEKAGVKIYTVKEGSIPDPGEGGTK
TGLPVARIGEAVIKAPLDQVATLWWVFNGRILWDKANTLASEVVEEYGKN
CRLVYIKGAPKPMISSRDFVFVSHKIPASDVGGRVGSQAFLQTNAATALP
ENSGAVRGNINSVVLLDSLDAYTTRVRYVCEIGPNGWLPNLVRREEGREG
GREGGLSVEGGLEGGEAGSDKGGGEGGRVD*
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mRNA from alignment at chr14:318678..321457+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00930.2 ID=NO14G00930.2|Name=NO14G00930.2|organism=Nannochloropsis oceanica|type=mRNA|length=2780bp|location=Sequence derived from alignment at chr14:318678..321457+ (Nannochloropsis oceanica)
ATACACTTCACTCGTCCTCGTTGCTTCCACAAATCACTTTCTCCCTCTTC
AACTACTAAAGTTCCGCAGAACACTTCCACTCACAAATCCCACACAAAGC
TCCACACAAAACCGCAGCCAAACCCACCAAGGACAAGAATGTACAGCCGC
TCCCTGCAACGTTCTCTTGCCCTTGCAGCATGCGTTACGGTCAGCGGCGA
GTTTGCCGCCCGCGTGCACCGCCAGCAACAACAGCAACAGGAGGAAAGCG
ACCATCCCTACCACCTTCAACATCACGTTCTCCTCCACCTCCCTTCCTCC
ACCGCCTCCTCCTTGTCCACCACCGCCTCCGCCCCATCGCTCGCCTCCTT
TTTTCTTTCCTCTCCGTCGCCTGCCTTTTGCTCCGCTACCGCGATCCCGG
AATACCATCAAGTCCCCCTCCCCCCTACGGATGCCAGCGACACGCAAGCC
GTGATTTCCCGTATGAGAAAGTATCTGGCTGCCCCCTCGCTCGATGACGT
CGGGAAGTTCAAGAAAGAGAAGGCTGGGGTAAAGATTTACACGGTCAAGG
AAGGATCGATCCCGGATCCTGGGGAGGGAGGGACGAAGACTGGCCTGCCT
GTGGCGAGGATTGGGGAGGCGGTTATCAAGGCGCCGTTAGACCAGGTGAA
ACGGGCGGGAGGCTGGAATGAACGGAGGGCGCTACAGAAAAAGTCTCATC
TATATAATCCACTACCCTCTTCCCTCCTTTGATTTGCACCCTTTCTTCCA
GGTGGCCACGCTATGGTGGGTGTTCAATGGCCGCATTCTTTGGGACAAGG
CGAATACTCTTGCTTCGGAGGTGGTGGAGGAGTATGGGAAGAACTGCCGT
CTGGTCTACATCAAGGGGGCTCCGAAGCCGATGATTAGCTCGCGGGACTT
TGTGTTTGTCAGCCACAAGTAAGGAGGGGAGGGAGGAGAGGGAGGGAAGG
AGGGAAGGAGGGAGGGAATGAGTGAGAGAGAGGACGACGGTCCTGTGTCC
GATGGTCGCCTTACGAGAATGTGTGATTGTGCCATGAAGTGGCTCCCTCC
CTCCTCTCCTCTCCTCCATCAGTCCCTTCTTCCCTCCCTCCTTCCCTCCC
TCCTTCCCTCCCTCCGTTCCTGAACCAGAAGTTGGGATCTTGTCTAGTGC
TGCTTCTCTCTCTCGGACTCACATCTGCTTCTCTCCCTCTGTCCGTCCCT
CCCTCCGTCCCTCCCTCCCTTCCACCCTCAGGATCCCTGCCAGTGACGTG
GGTGGGCGTGTGGGCTCCCAGGCCTTCCTACAGACCAACGCTGCCACGGC
CCTCCCTGAGAACAGCGGCGCCGTGCGCGGGAACATCAACAGTGTGGTGC
TCCTGGATAGCCTGGATGCTTATACCACCCGCGTGCGGTATGTGTGTGAG
ATTGGGCCTAATGGCTGGCTGCCCAACTTGGTGAGAAGGGAGGAGGGAAG
GGAGGGAGGGAGGGAGGGAGGGTTGAGTGTGGAAGGTGGACTTGAAGGAG
GGGAGGCAGGTAGCGATAAAGGGGGAGGGGAAGGAGGACGAGTCGATTGA
TTCATATTTATATTCTTTCTCCTTCTCCCTCTTGATCTCTCTGTCGGCGT
TTCTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCT
CTCACCCAACCACCCACATCCTACCCATATAATATATCGTATATCGCAAA
CCCATGTACATCCACCTCCACCTCCACCCGCACCCCTATCCACATACACC
TACACATATACCCTTACTCCCATCTATTAACCCACTCACACAGGCGGTGG
AGGCCGCGGCGGACGACTTGCCAGGTGTGCTGGGTGTGATGAAGGCGCAC
TTGGAGTCAGCGGCAGCCTCAGGTGAGTGAGCCGAGGTGGGAGGGAGGGA
TGGAAGGAATAAGAGAAGAAGGAATAATAAAAGCGGAGCAGGGGCACACA
CGGAGATGGAAGGAAAGGGAGGGGAGGGTAAGATGGCATTAAAATATAGG
AGGAAAATATGATATGCCGCATGTCTCTGTCTGCGTCCTTCCCCTAATGT
ATCCATCTCTTTTCCCGTCTCTGTTCTCCCATCTCATTCTGTACTCTTCC
CTCCCCTCCCCCCTCTTGTTCCCTTCCTCACAAGCTTAGAGGATCCCGAG
GCACTGGCCCGACGGAGGGAGAGCATGGCAAGGTCTGACCTCGCGGTACG
TGCATTCCTTCCCTCCTTTCCCCTTTCTCCCTTTCTCCCTTCCTCGATCG
CCTTGCCCATGCATAATCCCCGCTATTCTTACCCTCCCTTACCCTTCCTC
TTTCCACCCTCCCCCCCTTCGCTCAGCATCCTCTCCTCGTCGACAGCGTC
ACGGCCAGCAGGGAGGATTTACTCGCCTTACGCACCCTTCTCCGTGCCAA
ATTAGAAGAAGCCAAACGGGACGAAAAGAAAATGAAATTGGACTTGGGAG
ACTTGAGAAAGAAGATTCAGGGAGATTTGAAGAAGGTGGAGGCACGCCTT
AGGACCGCGTGAGGAGAATGGAGGGAGGGGAGGAGGGAGGAAATGAAGAA
GGAGGGAGGGAGGGAGAGAGGGATGGGAGGGTGTATCATTTTGATTTTGG
CGTGAGAGGACACACACACTTTTGAGAGATGTTTCGATATAATCCAGCGA
ACGATACATCAATTTTGATGTGCGTTGGAAATGAGGGGAGAACCACGAAA
GAAGGAAGGAAATGAAAGACAGAAAGGCGGAGTTAGAGAGGGGAGACAGT
GCAATGAAGTGCCCCCCCCCCGGATAAAAT
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Coding sequence (CDS) from alignment at chr14:318678..321457+

>NO14G00930.2 ID=NO14G00930.2|Name=NO14G00930.2|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr14:318678..321457+ (Nannochloropsis oceanica)
ATGTACAGCCGCTCCCTGCAACGTTCTCTTGCCCTTGCAGCATGCGTTAC
GGTCAGCGGCGAGTTTGCCGCCCGCGTGCACCGCCAGCAACAACAGCAAC
AGGAGGAAAGCGACCATCCCTACCACCTTCAACATCACGTTCTCCTCCAC
CTCCCTTCCTCCACCGCCTCCTCCTTGTCCACCACCGCCTCCGCCCCATC
GCTCGCCTCCTTTTTTCTTTCCTCTCCGTCGCCTGCCTTTTGCTCCGCTA
CCGCGATCCCGGAATACCATCAAGTCCCCCTCCCCCCTACGGATGCCAGC
GACACGCAAGCCGTGATTTCCCGTATGAGAAAGTATCTGGCTGCCCCCTC
GCTCGATGACGTCGGGAAGTTCAAGAAAGAGAAGGCTGGGGTAAAGATTT
ACACGGTCAAGGAAGGATCGATCCCGGATCCTGGGGAGGGAGGGACGAAG
ACTGGCCTGCCTGTGGCGAGGATTGGGGAGGCGGTTATCAAGGCGCCGTT
AGACCAGGTGGCCACGCTATGGTGGGTGTTCAATGGCCGCATTCTTTGGG
ACAAGGCGAATACTCTTGCTTCGGAGGTGGTGGAGGAGTATGGGAAGAAC
TGCCGTCTGGTCTACATCAAGGGGGCTCCGAAGCCGATGATTAGCTCGCG
GGACTTTGTGTTTGTCAGCCACAAGATCCCTGCCAGTGACGTGGGTGGGC
GTGTGGGCTCCCAGGCCTTCCTACAGACCAACGCTGCCACGGCCCTCCCT
GAGAACAGCGGCGCCGTGCGCGGGAACATCAACAGTGTGGTGCTCCTGGA
TAGCCTGGATGCTTATACCACCCGCGTGCGGTATGTGTGTGAGATTGGGC
CTAATGGCTGGCTGCCCAACTTGGTGAGAAGGGAGGAGGGAAGGGAGGGA
GGGAGGGAGGGAGGGTTGAGTGTGGAAGGTGGACTTGAAGGAGGGGAGGC
AGGTAGCGATAAAGGGGGAGGGGAAGGAGGACGAGTCGATTGA
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Synonyms
Publications