NO14G00920.1, NO14G00920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00920.1
Unique NameNO14G00920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2208
Alignment locationchr14:315320..318159 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:315320..318159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G00920.1 vs.
Match: EWM24739.1 (hypothetical protein Naga_100272g7 [Nannochloropsis gaditana])

HSP 1 Score: 273.1 bits (697), Expect = 1.100e-69
Identity = 131/214 (61.21%), Postives = 166/214 (77.57%), Query Frame = 0
Query:   66 MTFTKESLANLTVKLAWAMTFPLVWVGLFTKGWYNFTYTGNSDTSTPAFRNDFSAKYGLFGIDFESQSSGLLSTGYHGWVIANGANPDALTGIHSSRITAILSAVACVLTGVAYYRANKSRSEISVFILGRCSWLAAIDLSLNLTTLGLWGVLVNNPVFLTVCEASGCFVLPGENVTASTVSYTWGLLFVRAVIQSLLLVGIVYLTLAKRASLS 280
            M  TKE LA+ TVK+AW +TFPL+WVGLFTKGW++F Y GN +  + AFRND++A+YGLFGIDFE+   G++ TGY GW +AN A+P+A   IH SR+TAI+SAVAC+LT V Y  + K+ +E SV+I+GRC+WLA +DL+LNLTTLGLW +  N+P F TVCE  GCF LP ENV+ ST+SYTWGLL VR   Q LL   IV++TLAKRASL+
Sbjct:    1 MAITKEILAHGTVKIAWLVTFPLIWVGLFTKGWFDFAYKGNPEDESLAFRNDYTAQYGLFGIDFETPE-GIVRTGYSGWAVANSAHPNAYLSIHGSRVTAIISAVACILTAVTYLHSKKAPAEASVYIMGRCAWLATLDLALNLTTLGLWSITANSPAFNTVCEHQGCFALPTENVSNSTLSYTWGLLLVRVAFQILLAAAIVHMTLAKRASLN 213          
The following BLAST results are available for this feature:
BLAST of NO14G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24739.11.100e-6961.21hypothetical protein Naga_100272g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00920NO14G00920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00920.1NO14G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00920.1.cds1NO14G00920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00920.1.cds2NO14G00920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00920.1.cds3NO14G00920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00920.1.cds4NO14G00920.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00920.1 ID=NO14G00920.1|Name=NO14G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp
GATCTCCTGTATGGTTTTGTAAAGGTATTTGTAAGAATGTGTCCGTGGCG
TCTCTTCGAGCTGATCGCGCTCGCTGAGCGAGGAGTCCGAAAGCCTTACA
TAACTTGACTAGCGTCACGGCCTGGACAATGACACAAGGCCCTGCATACG
CCATGCGTGACTTCTGCCAGATAATCACCATAGCACACACACAATCCAGG
CCTTAGGATTTGGAACCCGCAAGTCAAAAGAACAATGGGGAGTCCGCTTG
CCATGGGTGTCACGCCTAAGAATATCATGGAGGGCCAGAAAATGCAATGA
AACAACGCCACCACCGCTTTCCGTGAAGAACGTGGCAAACAGAACGTCTG
TATTGCAGTGTCGCTACGGGTTGGTGGGTCGTGTCCAGGTTTCAATTGAA
TGGCGGTATGAAATGGACATTGCAGACACGTCAACTTTCGGGCAATACTC
GCTCACAAGGAGGAGCGCCCAACCTCAAGGAGGGCCCTAGGCATCCCGCG
GCCCGCAGCCGAGATTATCGGGGGCCCTGTCATTACTTCTGAACGACTTT
TGGGGCAGATCTTACGGTACTTTCGATGAATTTGACGAATCAACCTTCTT
TCGTGCAATACAAGCTGCCCACACGGGAATTTCTTAGGGTCCCTTTACGT
TTATGTTGCAGTCCTGGCGGAGGAGGAAAGGCAAGAAGGCAAGCCAGCGT
ATGTTCTCCGATATCGATCCTTCTCCTTCCTTCCTTATTTCTACATACGC
AGCCCACAGAGACCACGATCATGACCTTTACGAAAGAGTCCCTTGCGAAC
CTCACAGTCAAGCTAGCATGGGCGATGACATTCCCGTTGGTCTGGGTGGG
CCTCTTCACCAAGGGCTGGTATAACTTTACCTATACGGGAAACTCTGATA
CCAGCACCCCTGCATTCCGCAACGACTTCAGTGCCAAGTACGGGCTTTTT
GGCATTGATTTTGAGTCGCAGTCGTCTGGCCTCCTCAGCACCGGGTATCA
CGGCTGGGTAATCGCCAATGGCGCCAACCCCGACGCACTCACTGGCATTC
ATAGCTCCCGAATCACGGCCATTCTGAGCGCTGTGGCTTGCGTTTTGACG
GGCGTGGCATACTACCGTGCGAACAAGTCCCGTTCCGAGATTTCTGTTTT
CATCCTCGGGCGTTGCTCATGGCTTGCGGCGATTGACTTGTCTTTGAACT
TAACGACGCTCGGCCTGTGGGGAGTCCTTGTCAACAATCCTGTCTTTTTG
ACCGTCTGCGAAGCCAGCGGCTGCTTCGTCTTGCCCGGCGAGAACGTCAC
TGCCTCTACTGTCTCCTACACTTGGGGCCTCCTTTTCGTCCGGGCGGTCA
TCCAGAGCCTGTTATTGGTCGGCATCGTGTACCTCACCTTGGCAAAACGC
GCCAGCTTGAGCTTTAGCACGACTAAGATAGGACCAAACAGATCTTTGGA
ACCCTCTGCACCCGAGCTGGTGGCTTCCCCGAACAAGATGGCGGTCTAAA
AATTATTGTTCCCTCGAAGAAGTAGACGGTGAAATGGAGGAGACGTTGAA
AAGTAATTAGGGATGGAAACGTGATAGAGGGGTGCTACGATTTCAGAAGT
ATACACATTGGGAGAGATAAGAGTGCAATGTGGAATCATTTCTGAGGTGG
AAGCAAGGACTAACGGGCGTATAACTCGATGTGGAGTGGGAAGGAAGAGG
AGGAAGAGGTATGGGCGTACGTACGTATACAGGGCCAAGGGCTTAGACAA
TTTACTTTTACCCTGCACCCTGCAAGTGACAACTCAGGATCAAAAATGTT
GCGATAGAATTGAATGCGAAGAGGAAAGCAGCACATTTTGACTCAAGTAC
ATGTAATTCCTATTTACAAGATTTTACATTTGTTAAGTGGTGATTTTAGT
GAATGTGCAAAGGAAAAAGGGAAGAAGAGAGGGAGAAAGGGGAAAAAAGA
TGTCACATCACATGAAAGAGAGGAGAACATGAACAGGAAAAGGCAATGGG
TGGCAAAAAGACGTATTTGAAGACAGATAAATGAACTCTACGGTAAGAAA
AGAGTCCTCCTTGGAAGACGAAGATTGCATCGAGACGTGAGCAGGACAGA
ATGGAATAGAGTAAAAAAAGGGAAATTGCACGACAATAAAAGAGAAAACA
AAGGTCCTTCTGACATACAACTTGAAAAGAAATTATGGCGTAAAGTGTCC
CTGAGTCT
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protein sequence of NO14G00920.1

>NO14G00920.1-protein ID=NO14G00920.1-protein|Name=NO14G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MNLTNQPSFVQYKLPTREFLRVPLRLCCSPGGGGKARRQASVCSPISILL
LPSLFLHTQPTETTIMTFTKESLANLTVKLAWAMTFPLVWVGLFTKGWYN
FTYTGNSDTSTPAFRNDFSAKYGLFGIDFESQSSGLLSTGYHGWVIANGA
NPDALTGIHSSRITAILSAVACVLTGVAYYRANKSRSEISVFILGRCSWL
AAIDLSLNLTTLGLWGVLVNNPVFLTVCEASGCFVLPGENVTASTVSYTW
GLLFVRAVIQSLLLVGIVYLTLAKRASLSFSTTKIGPNRSLEPSAPELVA
SPNKMAV*
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mRNA from alignment at chr14:315320..318159+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00920.1 ID=NO14G00920.1|Name=NO14G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2840bp|location=Sequence derived from alignment at chr14:315320..318159+ (Nannochloropsis oceanica)
GATCTCCTGTATGGTTTTGTAAAGGTATTTGTAAGAATGTGTCCGTGGCG TCTCTTCGAGCTGATCGCGCTCGCTGAGCGAGGAGTCCGAAAGCCTTACA TAACTTGACTAGCGTCACGGCCTGGACAATGACACAAGGCCCTGCATACG CCATGCGTGACTTCTGCCAGATAATCACCATAGCACACACACAATCCAGG CCTTAGGATTTGGAACCCGCAAGTCAAAAGAACAATGGGGAGTCCGCTTG CCATGGGTGTCACGCCTAAGAATATCATGGAGGGCCAGAAAATGCAATGA AACAACGCCACCACCGCTTTCCGTGAAGAACGTGGCAAACAGAACGTCTG TATTGCAGTGTCGCTACGGGTTGGTGGGTCGTGTCCAGGTTTCAATTGAA TGGCGGTATGAAATGGACATTGCAGACACGTCAACTTTCGGGCAATACTC GCTCACAAGGAGGAGCGCCCAACCTCAAGGAGGGCCCTAGGCATCCCGCG GCCCGCAGCCGAGATTATCGGGGGCCCTGTCATTACTTCTGAACGACTTT TGGGGCAGATCTTACGGTACTTTCGATGAATTTGACGAATCAACCTTCTT TCGTGCAATACAAGCTGCCCACACGGGAATTTCTTAGGGTCCCTTTACGT TTATGTTGCAGTCCTGGCGGAGGAGGAAAGGCAAGAAGGCAAGCCAGCGT ATGTTCTCCGATATCGATCCTTCTCCTTCCTTCCTTATTTCTACATACGC AGCCCACAGAGACCACGATCATGACCTTTACGAAAGAGTCCCTTGCGAAC CTCACAGGTAAGCTGCTGTGGAGCTGGGAGGAGGGAATGGGGGACGAGGG GACCTTGGGAGAAGCAGAAGAATGAGATGGGCCACGATCTGCCCGCTCTT CTACCGGAACTTGGCTGTCGGCAGGCCTCTGCCGCGATGCCGCCCAACAT TGCCTTGCGCTCCCAATCCACCCTTTTTACACATCTTTATATATGCTACA CAACCACAGTCAAGCTAGCATGGGCGATGACATTCCCGTTGGTCTGGGTG GGCCTCTTCACCAAGGGTAAGTGCATTTTACTATCGGATGGACTAGATTT CTTTTATGCCTTGGTGCTCGAGGCACGCGTATCGCTTCCTTAGAAAGCTT TCATATGTATGTAGTGCGATATTTTGCGAGAAAGCTGGAGCCGGGAGTGG GCGGCAGCGATCGGCCAGCCCAGACCCCCCTTTTGGCACACGGCTCAGTT ATCAGTCGAGCAAAAGATTGATAAATGATAGTAATCAAGGCCCTCTCCCA AATCCCACCAGGCTGGTATAACTTTACCTATACGGGAAACTCTGATACCA GCACCCCTGCATTCCGCAACGACTTCAGTGCCAAGTACGGGCTTTTTGGC ATTGATTTTGAGTCGCAGTCGTCTGGCCTCCTCAGCACCGGGTATCACGG CTGGGTAATCGCCAATGGCGCCAACCCCGACGCACTCACTGGCATTCATA GCTCCCGAATCACGGCCATTCTGAGCGCTGTGGCTTGCGTTTTGACGGGC GTGGCATACTACCGTGCGAACAAGTCCCGTTCCGAGATTTCTGTTTTCAT CCTCGGGCGTTGCTCATGGCTTGCGGCGATTGACTTGTCTTTGAACTTAA CGACGCTCGGCCTGTGGGGAGTCCTTGTGTAAGTATCCAGGGAAATGAAT CAGTTAGACCTCGTACTTATCCTTAAGTCGTAGGTTCATGCCTACTCGCA TATATCGACGAAGGTTCTAAAGCACCCTACGGCTAGCCTACCTTATAACA TCAAATTGCTCATATCAACTCCTCCTCTCACCTCCCACCCATGACGCGCT GAAACTACATTAGCAACAATCCTGTCTTTTTGACCGTCTGCGAAGCCAGC GGCTGCTTCGTCTTGCCCGGCGAGAACGTCACTGCCTCTACTGTCTCCTA CACTTGGGGCCTCCTTTTCGTCCGGGCGGTCATCCAGAGCCTGTTATTGG TCGGCATCGTGTACCTCACCTTGGCAAAACGCGCCAGCTTGAGCTTTAGC ACGACTAAGATAGGACCAAACAGATCTTTGGAACCCTCTGCACCCGAGCT GGTGGCTTCCCCGAACAAGATGGCGGTCTAAAAATTATTGTTCCCTCGAA GAAGTAGACGGTGAAATGGAGGAGACGTTGAAAAGTAATTAGGGATGGAA ACGTGATAGAGGGGTGCTACGATTTCAGAAGTATACACATTGGGAGAGAT AAGAGTGCAATGTGGAATCATTTCTGAGGTGGAAGCAAGGACTAACGGGC GTATAACTCGATGTGGAGTGGGAAGGAAGAGGAGGAAGAGGTATGGGCGT ACGTACGTATACAGGGCCAAGGGCTTAGACAATTTACTTTTACCCTGCAC CCTGCAAGTGACAACTCAGGATCAAAAATGTTGCGATAGAATTGAATGCG AAGAGGAAAGCAGCACATTTTGACTCAAGTACATGTAATTCCTATTTACA AGATTTTACATTTGTTAAGTGGTGATTTTAGTGAATGTGCAAAGGAAAAA GGGAAGAAGAGAGGGAGAAAGGGGAAAAAAGATGTCACATCACATGAAAG AGAGGAGAACATGAACAGGAAAAGGCAATGGGTGGCAAAAAGACGTATTT GAAGACAGATAAATGAACTCTACGGTAAGAAAAGAGTCCTCCTTGGAAGA CGAAGATTGCATCGAGACGTGAGCAGGACAGAATGGAATAGAGTAAAAAA AGGGAAATTGCACGACAATAAAAGAGAAAACAAAGGTCCTTCTGACATAC AACTTGAAAAGAAATTATGGCGTAAAGTGTCCCTGAGTCT
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Coding sequence (CDS) from alignment at chr14:315320..318159+

>NO14G00920.1 ID=NO14G00920.1|Name=NO14G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr14:315320..318159+ (Nannochloropsis oceanica)
ATGAATTTGACGAATCAACCTTCTTTCGTGCAATACAAGCTGCCCACACG
GGAATTTCTTAGGGTCCCTTTACGTTTATGTTGCAGTCCTGGCGGAGGAG
GAAAGGCAAGAAGGCAAGCCAGCGTATGTTCTCCGATATCGATCCTTCTC
CTTCCTTCCTTATTTCTACATACGCAGCCCACAGAGACCACGATCATGAC
CTTTACGAAAGAGTCCCTTGCGAACCTCACAGTCAAGCTAGCATGGGCGA
TGACATTCCCGTTGGTCTGGGTGGGCCTCTTCACCAAGGGCTGGTATAAC
TTTACCTATACGGGAAACTCTGATACCAGCACCCCTGCATTCCGCAACGA
CTTCAGTGCCAAGTACGGGCTTTTTGGCATTGATTTTGAGTCGCAGTCGT
CTGGCCTCCTCAGCACCGGGTATCACGGCTGGGTAATCGCCAATGGCGCC
AACCCCGACGCACTCACTGGCATTCATAGCTCCCGAATCACGGCCATTCT
GAGCGCTGTGGCTTGCGTTTTGACGGGCGTGGCATACTACCGTGCGAACA
AGTCCCGTTCCGAGATTTCTGTTTTCATCCTCGGGCGTTGCTCATGGCTT
GCGGCGATTGACTTGTCTTTGAACTTAACGACGCTCGGCCTGTGGGGAGT
CCTTGTCAACAATCCTGTCTTTTTGACCGTCTGCGAAGCCAGCGGCTGCT
TCGTCTTGCCCGGCGAGAACGTCACTGCCTCTACTGTCTCCTACACTTGG
GGCCTCCTTTTCGTCCGGGCGGTCATCCAGAGCCTGTTATTGGTCGGCAT
CGTGTACCTCACCTTGGCAAAACGCGCCAGCTTGAGCTTTAGCACGACTA
AGATAGGACCAAACAGATCTTTGGAACCCTCTGCACCCGAGCTGGTGGCT
TCCCCGAACAAGATGGCGGTCTAA
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Synonyms
Publications