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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:315320..318159 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00920.1 vs.
Match: EWM24739.1 (hypothetical protein Naga_100272g7 [Nannochloropsis gaditana]) HSP 1 Score: 273.1 bits (697), Expect = 1.100e-69 Identity = 131/214 (61.21%), Postives = 166/214 (77.57%), Query Frame = 0
Query: 66 MTFTKESLANLTVKLAWAMTFPLVWVGLFTKGWYNFTYTGNSDTSTPAFRNDFSAKYGLFGIDFESQSSGLLSTGYHGWVIANGANPDALTGIHSSRITAILSAVACVLTGVAYYRANKSRSEISVFILGRCSWLAAIDLSLNLTTLGLWGVLVNNPVFLTVCEASGCFVLPGENVTASTVSYTWGLLFVRAVIQSLLLVGIVYLTLAKRASLS 280
M TKE LA+ TVK+AW +TFPL+WVGLFTKGW++F Y GN + + AFRND++A+YGLFGIDFE+ G++ TGY GW +AN A+P+A IH SR+TAI+SAVAC+LT V Y + K+ +E SV+I+GRC+WLA +DL+LNLTTLGLW + N+P F TVCE GCF LP ENV+ ST+SYTWGLL VR Q LL IV++TLAKRASL+
Sbjct: 1 MAITKEILAHGTVKIAWLVTFPLIWVGLFTKGWFDFAYKGNPEDESLAFRNDYTAQYGLFGIDFETPE-GIVRTGYSGWAVANSAHPNAYLSIHGSRVTAIISAVACILTAVTYLHSKKAPAEASVYIMGRCAWLATLDLALNLTTLGLWSITANSPAFNTVCEHQGCFALPTENVSNSTLSYTWGLLLVRVAFQILLAAAIVHMTLAKRASLN 213
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00920.1 ID=NO14G00920.1|Name=NO14G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp GATCTCCTGTATGGTTTTGTAAAGGTATTTGTAAGAATGTGTCCGTGGCG TCTCTTCGAGCTGATCGCGCTCGCTGAGCGAGGAGTCCGAAAGCCTTACA TAACTTGACTAGCGTCACGGCCTGGACAATGACACAAGGCCCTGCATACG CCATGCGTGACTTCTGCCAGATAATCACCATAGCACACACACAATCCAGG CCTTAGGATTTGGAACCCGCAAGTCAAAAGAACAATGGGGAGTCCGCTTG CCATGGGTGTCACGCCTAAGAATATCATGGAGGGCCAGAAAATGCAATGA AACAACGCCACCACCGCTTTCCGTGAAGAACGTGGCAAACAGAACGTCTG TATTGCAGTGTCGCTACGGGTTGGTGGGTCGTGTCCAGGTTTCAATTGAA TGGCGGTATGAAATGGACATTGCAGACACGTCAACTTTCGGGCAATACTC GCTCACAAGGAGGAGCGCCCAACCTCAAGGAGGGCCCTAGGCATCCCGCG GCCCGCAGCCGAGATTATCGGGGGCCCTGTCATTACTTCTGAACGACTTT TGGGGCAGATCTTACGGTACTTTCGATGAATTTGACGAATCAACCTTCTT TCGTGCAATACAAGCTGCCCACACGGGAATTTCTTAGGGTCCCTTTACGT TTATGTTGCAGTCCTGGCGGAGGAGGAAAGGCAAGAAGGCAAGCCAGCGT ATGTTCTCCGATATCGATCCTTCTCCTTCCTTCCTTATTTCTACATACGC AGCCCACAGAGACCACGATCATGACCTTTACGAAAGAGTCCCTTGCGAAC CTCACAGTCAAGCTAGCATGGGCGATGACATTCCCGTTGGTCTGGGTGGG CCTCTTCACCAAGGGCTGGTATAACTTTACCTATACGGGAAACTCTGATA CCAGCACCCCTGCATTCCGCAACGACTTCAGTGCCAAGTACGGGCTTTTT GGCATTGATTTTGAGTCGCAGTCGTCTGGCCTCCTCAGCACCGGGTATCA CGGCTGGGTAATCGCCAATGGCGCCAACCCCGACGCACTCACTGGCATTC ATAGCTCCCGAATCACGGCCATTCTGAGCGCTGTGGCTTGCGTTTTGACG GGCGTGGCATACTACCGTGCGAACAAGTCCCGTTCCGAGATTTCTGTTTT CATCCTCGGGCGTTGCTCATGGCTTGCGGCGATTGACTTGTCTTTGAACT TAACGACGCTCGGCCTGTGGGGAGTCCTTGTCAACAATCCTGTCTTTTTG ACCGTCTGCGAAGCCAGCGGCTGCTTCGTCTTGCCCGGCGAGAACGTCAC TGCCTCTACTGTCTCCTACACTTGGGGCCTCCTTTTCGTCCGGGCGGTCA TCCAGAGCCTGTTATTGGTCGGCATCGTGTACCTCACCTTGGCAAAACGC GCCAGCTTGAGCTTTAGCACGACTAAGATAGGACCAAACAGATCTTTGGA ACCCTCTGCACCCGAGCTGGTGGCTTCCCCGAACAAGATGGCGGTCTAAA AATTATTGTTCCCTCGAAGAAGTAGACGGTGAAATGGAGGAGACGTTGAA AAGTAATTAGGGATGGAAACGTGATAGAGGGGTGCTACGATTTCAGAAGT ATACACATTGGGAGAGATAAGAGTGCAATGTGGAATCATTTCTGAGGTGG AAGCAAGGACTAACGGGCGTATAACTCGATGTGGAGTGGGAAGGAAGAGG AGGAAGAGGTATGGGCGTACGTACGTATACAGGGCCAAGGGCTTAGACAA TTTACTTTTACCCTGCACCCTGCAAGTGACAACTCAGGATCAAAAATGTT GCGATAGAATTGAATGCGAAGAGGAAAGCAGCACATTTTGACTCAAGTAC ATGTAATTCCTATTTACAAGATTTTACATTTGTTAAGTGGTGATTTTAGT GAATGTGCAAAGGAAAAAGGGAAGAAGAGAGGGAGAAAGGGGAAAAAAGA TGTCACATCACATGAAAGAGAGGAGAACATGAACAGGAAAAGGCAATGGG TGGCAAAAAGACGTATTTGAAGACAGATAAATGAACTCTACGGTAAGAAA AGAGTCCTCCTTGGAAGACGAAGATTGCATCGAGACGTGAGCAGGACAGA ATGGAATAGAGTAAAAAAAGGGAAATTGCACGACAATAAAAGAGAAAACA AAGGTCCTTCTGACATACAACTTGAAAAGAAATTATGGCGTAAAGTGTCC CTGAGTCT back to topprotein sequence of NO14G00920.1 >NO14G00920.1-protein ID=NO14G00920.1-protein|Name=NO14G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp MNLTNQPSFVQYKLPTREFLRVPLRLCCSPGGGGKARRQASVCSPISILL LPSLFLHTQPTETTIMTFTKESLANLTVKLAWAMTFPLVWVGLFTKGWYN FTYTGNSDTSTPAFRNDFSAKYGLFGIDFESQSSGLLSTGYHGWVIANGA NPDALTGIHSSRITAILSAVACVLTGVAYYRANKSRSEISVFILGRCSWL AAIDLSLNLTTLGLWGVLVNNPVFLTVCEASGCFVLPGENVTASTVSYTW GLLFVRAVIQSLLLVGIVYLTLAKRASLSFSTTKIGPNRSLEPSAPELVA SPNKMAV* back to topmRNA from alignment at chr14:315320..318159+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00920.1 ID=NO14G00920.1|Name=NO14G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2840bp|location=Sequence derived from alignment at chr14:315320..318159+ (Nannochloropsis oceanica) GATCTCCTGTATGGTTTTGTAAAGGTATTTGTAAGAATGTGTCCGTGGCG
TCTCTTCGAGCTGATCGCGCTCGCTGAGCGAGGAGTCCGAAAGCCTTACA
TAACTTGACTAGCGTCACGGCCTGGACAATGACACAAGGCCCTGCATACG
CCATGCGTGACTTCTGCCAGATAATCACCATAGCACACACACAATCCAGG
CCTTAGGATTTGGAACCCGCAAGTCAAAAGAACAATGGGGAGTCCGCTTG
CCATGGGTGTCACGCCTAAGAATATCATGGAGGGCCAGAAAATGCAATGA
AACAACGCCACCACCGCTTTCCGTGAAGAACGTGGCAAACAGAACGTCTG
TATTGCAGTGTCGCTACGGGTTGGTGGGTCGTGTCCAGGTTTCAATTGAA
TGGCGGTATGAAATGGACATTGCAGACACGTCAACTTTCGGGCAATACTC
GCTCACAAGGAGGAGCGCCCAACCTCAAGGAGGGCCCTAGGCATCCCGCG
GCCCGCAGCCGAGATTATCGGGGGCCCTGTCATTACTTCTGAACGACTTT
TGGGGCAGATCTTACGGTACTTTCGATGAATTTGACGAATCAACCTTCTT
TCGTGCAATACAAGCTGCCCACACGGGAATTTCTTAGGGTCCCTTTACGT
TTATGTTGCAGTCCTGGCGGAGGAGGAAAGGCAAGAAGGCAAGCCAGCGT
ATGTTCTCCGATATCGATCCTTCTCCTTCCTTCCTTATTTCTACATACGC
AGCCCACAGAGACCACGATCATGACCTTTACGAAAGAGTCCCTTGCGAAC
CTCACAGGTAAGCTGCTGTGGAGCTGGGAGGAGGGAATGGGGGACGAGGG
GACCTTGGGAGAAGCAGAAGAATGAGATGGGCCACGATCTGCCCGCTCTT
CTACCGGAACTTGGCTGTCGGCAGGCCTCTGCCGCGATGCCGCCCAACAT
TGCCTTGCGCTCCCAATCCACCCTTTTTACACATCTTTATATATGCTACA
CAACCACAGTCAAGCTAGCATGGGCGATGACATTCCCGTTGGTCTGGGTG
GGCCTCTTCACCAAGGGTAAGTGCATTTTACTATCGGATGGACTAGATTT
CTTTTATGCCTTGGTGCTCGAGGCACGCGTATCGCTTCCTTAGAAAGCTT
TCATATGTATGTAGTGCGATATTTTGCGAGAAAGCTGGAGCCGGGAGTGG
GCGGCAGCGATCGGCCAGCCCAGACCCCCCTTTTGGCACACGGCTCAGTT
ATCAGTCGAGCAAAAGATTGATAAATGATAGTAATCAAGGCCCTCTCCCA
AATCCCACCAGGCTGGTATAACTTTACCTATACGGGAAACTCTGATACCA
GCACCCCTGCATTCCGCAACGACTTCAGTGCCAAGTACGGGCTTTTTGGC
ATTGATTTTGAGTCGCAGTCGTCTGGCCTCCTCAGCACCGGGTATCACGG
CTGGGTAATCGCCAATGGCGCCAACCCCGACGCACTCACTGGCATTCATA
GCTCCCGAATCACGGCCATTCTGAGCGCTGTGGCTTGCGTTTTGACGGGC
GTGGCATACTACCGTGCGAACAAGTCCCGTTCCGAGATTTCTGTTTTCAT
CCTCGGGCGTTGCTCATGGCTTGCGGCGATTGACTTGTCTTTGAACTTAA
CGACGCTCGGCCTGTGGGGAGTCCTTGTGTAAGTATCCAGGGAAATGAAT
CAGTTAGACCTCGTACTTATCCTTAAGTCGTAGGTTCATGCCTACTCGCA
TATATCGACGAAGGTTCTAAAGCACCCTACGGCTAGCCTACCTTATAACA
TCAAATTGCTCATATCAACTCCTCCTCTCACCTCCCACCCATGACGCGCT
GAAACTACATTAGCAACAATCCTGTCTTTTTGACCGTCTGCGAAGCCAGC
GGCTGCTTCGTCTTGCCCGGCGAGAACGTCACTGCCTCTACTGTCTCCTA
CACTTGGGGCCTCCTTTTCGTCCGGGCGGTCATCCAGAGCCTGTTATTGG
TCGGCATCGTGTACCTCACCTTGGCAAAACGCGCCAGCTTGAGCTTTAGC
ACGACTAAGATAGGACCAAACAGATCTTTGGAACCCTCTGCACCCGAGCT
GGTGGCTTCCCCGAACAAGATGGCGGTCTAAAAATTATTGTTCCCTCGAA
GAAGTAGACGGTGAAATGGAGGAGACGTTGAAAAGTAATTAGGGATGGAA
ACGTGATAGAGGGGTGCTACGATTTCAGAAGTATACACATTGGGAGAGAT
AAGAGTGCAATGTGGAATCATTTCTGAGGTGGAAGCAAGGACTAACGGGC
GTATAACTCGATGTGGAGTGGGAAGGAAGAGGAGGAAGAGGTATGGGCGT
ACGTACGTATACAGGGCCAAGGGCTTAGACAATTTACTTTTACCCTGCAC
CCTGCAAGTGACAACTCAGGATCAAAAATGTTGCGATAGAATTGAATGCG
AAGAGGAAAGCAGCACATTTTGACTCAAGTACATGTAATTCCTATTTACA
AGATTTTACATTTGTTAAGTGGTGATTTTAGTGAATGTGCAAAGGAAAAA
GGGAAGAAGAGAGGGAGAAAGGGGAAAAAAGATGTCACATCACATGAAAG
AGAGGAGAACATGAACAGGAAAAGGCAATGGGTGGCAAAAAGACGTATTT
GAAGACAGATAAATGAACTCTACGGTAAGAAAAGAGTCCTCCTTGGAAGA
CGAAGATTGCATCGAGACGTGAGCAGGACAGAATGGAATAGAGTAAAAAA
AGGGAAATTGCACGACAATAAAAGAGAAAACAAAGGTCCTTCTGACATAC
AACTTGAAAAGAAATTATGGCGTAAAGTGTCCCTGAGTCT back to topCoding sequence (CDS) from alignment at chr14:315320..318159+ >NO14G00920.1 ID=NO14G00920.1|Name=NO14G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr14:315320..318159+ (Nannochloropsis oceanica) ATGAATTTGACGAATCAACCTTCTTTCGTGCAATACAAGCTGCCCACACG GGAATTTCTTAGGGTCCCTTTACGTTTATGTTGCAGTCCTGGCGGAGGAG GAAAGGCAAGAAGGCAAGCCAGCGTATGTTCTCCGATATCGATCCTTCTC CTTCCTTCCTTATTTCTACATACGCAGCCCACAGAGACCACGATCATGAC CTTTACGAAAGAGTCCCTTGCGAACCTCACAGTCAAGCTAGCATGGGCGA TGACATTCCCGTTGGTCTGGGTGGGCCTCTTCACCAAGGGCTGGTATAAC TTTACCTATACGGGAAACTCTGATACCAGCACCCCTGCATTCCGCAACGA CTTCAGTGCCAAGTACGGGCTTTTTGGCATTGATTTTGAGTCGCAGTCGT CTGGCCTCCTCAGCACCGGGTATCACGGCTGGGTAATCGCCAATGGCGCC AACCCCGACGCACTCACTGGCATTCATAGCTCCCGAATCACGGCCATTCT GAGCGCTGTGGCTTGCGTTTTGACGGGCGTGGCATACTACCGTGCGAACA AGTCCCGTTCCGAGATTTCTGTTTTCATCCTCGGGCGTTGCTCATGGCTT GCGGCGATTGACTTGTCTTTGAACTTAACGACGCTCGGCCTGTGGGGAGT CCTTGTCAACAATCCTGTCTTTTTGACCGTCTGCGAAGCCAGCGGCTGCT TCGTCTTGCCCGGCGAGAACGTCACTGCCTCTACTGTCTCCTACACTTGG GGCCTCCTTTTCGTCCGGGCGGTCATCCAGAGCCTGTTATTGGTCGGCAT CGTGTACCTCACCTTGGCAAAACGCGCCAGCTTGAGCTTTAGCACGACTA AGATAGGACCAAACAGATCTTTGGAACCCTCTGCACCCGAGCTGGTGGCT TCCCCGAACAAGATGGCGGTCTAA back to top
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