NO14G00890.1, NO14G00890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00890.1
Unique NameNO14G00890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1173
Alignment locationchr14:304758..305930 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:304758..305930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00890.1 vs.
Match: EWM24731.1 (Ankyrin repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 5.500e-39
Identity = 135/368 (36.68%), Postives = 196/368 (53.26%), Query Frame = 0 
Query:   41 SRSSVNYQDEQGRSPLGVVATMAGRPMVDFVKMLVGP-LTKLRIKDARLRTPLLLAAENDRTEIFIYLLERLSQYETGWQLTEEKDCYQRGPLHYMCQHRNVAGVRALLAVAGAPPVGAKVREDGEEEKKKKERIKVVVNARTSSGETPLFWLAQS---STFSSQEKERMEGGGNRQKERSSRDCSSIDDKNTADAVEIAELLLAAGADPQVVNAMGQKPMDVLDEGEGDDGKEGGVKNRLQALLSPERISRGRGETEKEEEEKEEQEAERKVAEKKGCENSSIAINTPFPKTA-AVAPPGGMLSSFPTRGVGFDA-------GNSSRIGIGSGSRSGSS------GGSAPKRLKIKLKAPAARAKDK 391
            S   VNYQDEQGRSPLGV  T  G+   D VK LV      L ++DARLRTPLLLA+E ++T   +YLL++L      W+L +E+DC++RGPLHYMC+H NV GV+AL++VA A     +  E+G         + ++VN +TSSGETPLFWLAQS   +   S+EK       +   + +   C   D  +T D +EIA LL+ AGA+P+  NA+GQ P  ++++      KEG V+   + L +    + G+ E E+  E K+E          +   +S    ++  P  +    P    L+S P R  G  A       G    +G  +  R G++      GG+  K+L+IK++AP      K
Sbjct:   41 SLDEVNYQDEQGRSPLGVAVTREGQS--DLVKALVEEGNASLGLRDARLRTPLLLASEFNQTSNVLYLLKKLQAQNNKWRLADERDCFRRGPLHYMCKHWNVEGVQALVSVARAQASDVQNPENGNSSSV----LSLLVNEKTSSGETPLFWLAQSIADTNKKSKEKRFERAEAHDHTDEAVAHCHD-DKASTNDILEIARLLVGAGAEPRAGNALGQSPATLVNQMRA-RAKEGRVEELKEGLQALFLAAEGKCEDEEAWEVKKEDVRGASGVAVEASRDSPTGSSSTLPGVSQGPQPCRNSLASLPARREGSSATLSPGGVGLVRALGGQTNGRQGAAGGGRGPGGAVGKKLRIKMRAPTGEQDAK 400
The following BLAST results are available for this feature:
BLAST of NO14G00890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24731.15.500e-3936.68Ankyrin repeat-containing domain protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00890NO14G00890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00890.1NO14G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00890.1.cds1NO14G00890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00890.1 ID=NO14G00890.1|Name=NO14G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp
ATGAATACCTCCAATCCACCCGACTCTTTCTTGTTAGATTGTGTTCTCGG
CTTCCCAACGAAAACCCCTGCGGAAATCGACAGCTTCATGAACCTTTACG
CCAGGGAAGGTTACCATAGCAGCAGAAGTTCTGTCAACTACCAAGACGAG
CAAGGTCGAAGTCCCTTGGGAGTCGTGGCCACAATGGCCGGGCGCCCAAT
GGTAGACTTCGTGAAGATGTTGGTGGGACCGCTAACGAAGCTGCGCATAA
AAGATGCCCGGTTACGGACCCCTTTGTTGCTTGCCGCTGAGAATGACCGT
ACAGAGATTTTCATCTATCTACTGGAGAGACTCTCACAATATGAGACGGG
ATGGCAGCTGACAGAGGAAAAGGATTGCTATCAACGTGGGCCGCTGCATT
ACATGTGCCAACACCGAAATGTGGCAGGAGTGCGGGCCCTCCTTGCCGTG
GCAGGGGCACCACCCGTCGGCGCCAAGGTAAGAGAGGATGGGGAGGAAGA
GAAGAAGAAGAAGGAGAGGATCAAGGTCGTGGTCAATGCCAGGACAAGCA
GTGGGGAGACGCCCCTCTTCTGGTTGGCACAGTCATCAACCTTTTCGTCG
CAAGAGAAAGAAAGGATGGAGGGCGGGGGAAATAGACAGAAAGAGAGAAG
TAGCCGCGACTGCTCCTCCATTGACGACAAAAACACGGCTGATGCTGTGG
AGATCGCCGAGCTTCTCCTAGCGGCAGGTGCAGACCCCCAGGTGGTCAAC
GCCATGGGCCAGAAGCCTATGGATGTACTGGATGAGGGGGAGGGGGATGA
TGGGAAGGAGGGAGGGGTGAAGAATCGGCTGCAGGCATTGTTATCCCCTG
AGAGAATTTCAAGGGGGAGGGGAGAAACAGAGAAGGAGGAGGAGGAAAAG
GAGGAGCAGGAGGCTGAGAGGAAAGTCGCAGAGAAAAAAGGGTGTGAAAA
CAGTAGCATAGCGATCAATACGCCCTTTCCGAAGACGGCTGCCGTAGCAC
CACCAGGAGGCATGCTGTCCTCCTTCCCCACCCGAGGAGTGGGATTCGAT
GCTGGTAACAGCAGTCGCATCGGCATTGGTAGTGGTAGCAGGAGTGGCAG
CAGTGGAGGTAGTGCCCCCAAGAGGCTGAAGATAAAGCTAAAGGCACCTG
CGGCGAGAGCAAAAGATAAGTAA
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protein sequence of NO14G00890.1

>NO14G00890.1-protein ID=NO14G00890.1-protein|Name=NO14G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MNTSNPPDSFLLDCVLGFPTKTPAEIDSFMNLYAREGYHSSRSSVNYQDE
QGRSPLGVVATMAGRPMVDFVKMLVGPLTKLRIKDARLRTPLLLAAENDR
TEIFIYLLERLSQYETGWQLTEEKDCYQRGPLHYMCQHRNVAGVRALLAV
AGAPPVGAKVREDGEEEKKKKERIKVVVNARTSSGETPLFWLAQSSTFSS
QEKERMEGGGNRQKERSSRDCSSIDDKNTADAVEIAELLLAAGADPQVVN
AMGQKPMDVLDEGEGDDGKEGGVKNRLQALLSPERISRGRGETEKEEEEK
EEQEAERKVAEKKGCENSSIAINTPFPKTAAVAPPGGMLSSFPTRGVGFD
AGNSSRIGIGSGSRSGSSGGSAPKRLKIKLKAPAARAKDK*
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mRNA from alignment at chr14:304758..305930+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00890.1 ID=NO14G00890.1|Name=NO14G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp|location=Sequence derived from alignment at chr14:304758..305930+ (Nannochloropsis oceanica)
ATGAATACCTCCAATCCACCCGACTCTTTCTTGTTAGATTGTGTTCTCGG
CTTCCCAACGAAAACCCCTGCGGAAATCGACAGCTTCATGAACCTTTACG
CCAGGGAAGGTTACCATAGCAGCAGAAGTTCTGTCAACTACCAAGACGAG
CAAGGTCGAAGTCCCTTGGGAGTCGTGGCCACAATGGCCGGGCGCCCAAT
GGTAGACTTCGTGAAGATGTTGGTGGGACCGCTAACGAAGCTGCGCATAA
AAGATGCCCGGTTACGGACCCCTTTGTTGCTTGCCGCTGAGAATGACCGT
ACAGAGATTTTCATCTATCTACTGGAGAGACTCTCACAATATGAGACGGG
ATGGCAGCTGACAGAGGAAAAGGATTGCTATCAACGTGGGCCGCTGCATT
ACATGTGCCAACACCGAAATGTGGCAGGAGTGCGGGCCCTCCTTGCCGTG
GCAGGGGCACCACCCGTCGGCGCCAAGGTAAGAGAGGATGGGGAGGAAGA
GAAGAAGAAGAAGGAGAGGATCAAGGTCGTGGTCAATGCCAGGACAAGCA
GTGGGGAGACGCCCCTCTTCTGGTTGGCACAGTCATCAACCTTTTCGTCG
CAAGAGAAAGAAAGGATGGAGGGCGGGGGAAATAGACAGAAAGAGAGAAG
TAGCCGCGACTGCTCCTCCATTGACGACAAAAACACGGCTGATGCTGTGG
AGATCGCCGAGCTTCTCCTAGCGGCAGGTGCAGACCCCCAGGTGGTCAAC
GCCATGGGCCAGAAGCCTATGGATGTACTGGATGAGGGGGAGGGGGATGA
TGGGAAGGAGGGAGGGGTGAAGAATCGGCTGCAGGCATTGTTATCCCCTG
AGAGAATTTCAAGGGGGAGGGGAGAAACAGAGAAGGAGGAGGAGGAAAAG
GAGGAGCAGGAGGCTGAGAGGAAAGTCGCAGAGAAAAAAGGGTGTGAAAA
CAGTAGCATAGCGATCAATACGCCCTTTCCGAAGACGGCTGCCGTAGCAC
CACCAGGAGGCATGCTGTCCTCCTTCCCCACCCGAGGAGTGGGATTCGAT
GCTGGTAACAGCAGTCGCATCGGCATTGGTAGTGGTAGCAGGAGTGGCAG
CAGTGGAGGTAGTGCCCCCAAGAGGCTGAAGATAAAGCTAAAGGCACCTG
CGGCGAGAGCAAAAGATAAGTAA
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Coding sequence (CDS) from alignment at chr14:304758..305930+

>NO14G00890.1 ID=NO14G00890.1|Name=NO14G00890.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr14:304758..305930+ (Nannochloropsis oceanica)
ATGAATACCTCCAATCCACCCGACTCTTTCTTGTTAGATTGTGTTCTCGG
CTTCCCAACGAAAACCCCTGCGGAAATCGACAGCTTCATGAACCTTTACG
CCAGGGAAGGTTACCATAGCAGCAGAAGTTCTGTCAACTACCAAGACGAG
CAAGGTCGAAGTCCCTTGGGAGTCGTGGCCACAATGGCCGGGCGCCCAAT
GGTAGACTTCGTGAAGATGTTGGTGGGACCGCTAACGAAGCTGCGCATAA
AAGATGCCCGGTTACGGACCCCTTTGTTGCTTGCCGCTGAGAATGACCGT
ACAGAGATTTTCATCTATCTACTGGAGAGACTCTCACAATATGAGACGGG
ATGGCAGCTGACAGAGGAAAAGGATTGCTATCAACGTGGGCCGCTGCATT
ACATGTGCCAACACCGAAATGTGGCAGGAGTGCGGGCCCTCCTTGCCGTG
GCAGGGGCACCACCCGTCGGCGCCAAGGTAAGAGAGGATGGGGAGGAAGA
GAAGAAGAAGAAGGAGAGGATCAAGGTCGTGGTCAATGCCAGGACAAGCA
GTGGGGAGACGCCCCTCTTCTGGTTGGCACAGTCATCAACCTTTTCGTCG
CAAGAGAAAGAAAGGATGGAGGGCGGGGGAAATAGACAGAAAGAGAGAAG
TAGCCGCGACTGCTCCTCCATTGACGACAAAAACACGGCTGATGCTGTGG
AGATCGCCGAGCTTCTCCTAGCGGCAGGTGCAGACCCCCAGGTGGTCAAC
GCCATGGGCCAGAAGCCTATGGATGTACTGGATGAGGGGGAGGGGGATGA
TGGGAAGGAGGGAGGGGTGAAGAATCGGCTGCAGGCATTGTTATCCCCTG
AGAGAATTTCAAGGGGGAGGGGAGAAACAGAGAAGGAGGAGGAGGAAAAG
GAGGAGCAGGAGGCTGAGAGGAAAGTCGCAGAGAAAAAAGGGTGTGAAAA
CAGTAGCATAGCGATCAATACGCCCTTTCCGAAGACGGCTGCCGTAGCAC
CACCAGGAGGCATGCTGTCCTCCTTCCCCACCCGAGGAGTGGGATTCGAT
GCTGGTAACAGCAGTCGCATCGGCATTGGTAGTGGTAGCAGGAGTGGCAG
CAGTGGAGGTAGTGCCCCCAAGAGGCTGAAGATAAAGCTAAAGGCACCTG
CGGCGAGAGCAAAAGATAAGTAA
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Synonyms
Publications