NO14G00840.1, NO14G00840.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G00840.1
Unique Name	NO14G00840.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2094
Alignment location	chr14:294852..297668 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:294852..297668 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO14G00840.1 vs.
Match: EWM24721.1 (nedd8 activating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 708.0 bits (1826), Expect = 2.200e-200
Identity = 373/534 (69.85%), Postives = 431/534 (80.71%), Query Frame = 0

Query:    1 MKRKMDKDIPTADSAVDNTTTSSTTTMNDSAG-TATGDTNRSKILTRTPP---PSSSSFSSSSSFTTTSTSTSTTNK----RNGNIPHDEDDYYNDTTMDLDKVLLRPSPFGVESGSLALGEFEPGQDLKEMLAEARVLVVGAGGLGCEILKNLALSGVKDIDVIDLDTIELSNLNRQFLFREKDIGRPKAVVAAEFIMERVPGVTVRAHHGKIQEKDASFYKQFSIVIAGLDNIKARIWLNSTLFSLAERNEGWKEGGGEGGAGLQFDLASVVPLVDGGTEGFQGQARVVLPGLTACFHCTLDLFPPAHAFQLCTLADTPRQPEHCVAFAQLLLWPEAHPEGTVLDADDPEHVSWIFSKAQERANKFGIEGVTRRLTLGVIKNIIPAIASTNAIVAAVSVNEAIKVLTFMSQIMNNYMMYQGPDGIYTYTTAHTKKDDCPVCGSQEINLPLSPSLLLSEVLDLLRSHPSLQLAAPSLSCGDTVLYMQRPPALEIATRGNLGKKIGNLLPRSGEVLSITDPSVSQSVAVVLNYE 527
            MKRKMD +I T     ++ T +S    +++ G TA G+T R      T P   PSS   + S   + +       N+            E+   +D   D+D +LLRPSPF  +SGSLALGEFE G DLKEMLAEARVLVVGAGGLGCEILKNLALSGVKDID+IDLDT+ELSNLNRQFLFREKDIG+PKAVVAA+FIMERVPGV VR HHGKIQ+KDA+FYKQFSIVIAGLDNIKARIWLNSTLFSLAER+E  ++          +DLA+V+PLVDGGTEGFQGQARV+LPGLTACFHCTLDLFPPA +FQLCTLADTPRQPEHCVA+AQ+LLWPEAHPEGTVLD D PEHV+W++ KA+ERA +FGIEG+T RLTLGVIKNIIPA+ASTNA+VAAVSVNEAIK+LTFMSQ+MNNYMMYQGP+GIYTYTTAH +KDDC VCGS+E +L ++P+LLLS+VL LL+S+ SLQL APSL+CG+ VLYMQRPPALE ATR NL KKI  LLP SGE LS+TDPSV+Q V V+L YE
Sbjct:    1 MKRKMDMEITTVAKPSNDYTATSMHVGSEAVGETAAGNTQREGSSLPTMPIIDPSSGQATHSKCESMSQCRMGDKNESRQAEGERARESEEGACDDGMTDMDNLLLRPSPFAADSGSLALGEFEAGADLKEMLAEARVLVVGAGGLGCEILKNLALSGVKDIDLIDLDTVELSNLNRQFLFREKDIGQPKAVVAAKFIMERVPGVRVRPHHGKIQDKDAAFYKQFSIVIAGLDNIKARIWLNSTLFSLAERSESSEKDDSVP----PYDLATVIPLVDGGTEGFQGQARVILPGLTACFHCTLDLFPPAQSFQLCTLADTPRQPEHCVAYAQILLWPEAHPEGTVLDPDIPEHVAWVWGKAKERARQFGIEGITYRLTLGVIKNIIPAVASTNAVVAAVSVNEAIKILTFMSQVMNNYMMYQGPEGIYTYTTAHQRKDDCLVCGSRETHLSIAPTLLLSDVLHLLKSNASLQLTAPSLTCGNKVLYMQRPPALEAATRENLSKKISELLPLSGEALSVTDPSVNQPVTVILKYE 530

The following BLAST results are available for this feature:

BLAST of NO14G00840.1 vs.

BLAST of NO14G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24721.1	2.200e-200	69.85	nedd8 activating enzyme [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G00840	NO14G00840	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G00840.1	NO14G00840.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G00840.1.cds1	NO14G00840.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G00840.1.cds2	NO14G00840.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G00840.1.cds3	NO14G00840.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G00840.1.cds4	NO14G00840.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G00840.1.cds5	NO14G00840.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO14G00840.1.cds6	NO14G00840.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:294852..297668+
coding sequence from alignment at chr14:294852..297668+

mRNA sequence

>NO14G00840.1 ID=NO14G00840.1|Name=NO14G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp
GGAGAAAACCGGCGATCGATCGGAACGAGACAGTATGCTAGTCATGGAAA
CGAGGGCCGGAGGAAGAGAGACGTGTCATCCCGCCGCCGACGCAACCATA
CACAAATCGCTGCACACATAACAGGGCCGGACAGTGCGTGTATCCCTTGC
TGCAAGCAGTGAACAGCCTGGGCGTGCGCTTCGCGACGACTCTACTCCTT
CATTTTCCTTGCCCCCGGACACAAAAATAAAGCTTGCGCTGCCCTCACCA
CTCCCAAGACGACGGCAGTTTCAACGCTCTGACAACCCCTGTCTTGGCCT
AATGGGCCTCGTTAAAGAGTAATCTATTTTTTCTTGCGTTCTATCCTTAC
AACCTCCCCTCCCTGCCCCTCCTACCCTCATCCACCTCTCCCGATAGAAT
GAAAAGGAAGATGGACAAGGACATACCAACTGCTGACTCTGCTGTCGACA
ACACCACCACCTCCAGCACCACGACCATGAACGACAGCGCGGGCACGGCC
ACGGGCGACACAAACCGCAGTAAGATCCTCACGCGTACCCCTCCCCCTTC
TTCCTCGTCCTTCTCGTCCTCCTCCTCCTTCACAACCACCTCCACCTCCA
CCTCCACCACCAACAAGCGTAATGGCAACATTCCTCATGATGAGGATGAT
TACTACAATGACACCACAATGGATTTGGACAAGGTGTTGCTGCGGCCGAG
CCCTTTTGGGGTGGAGTCGGGCTCGCTAGCTCTGGGGGAATTCGAGCCCG
GACAAGACCTGAAGGAAATGTTGGCGGAGGCACGAGTGTTGGTAGTAGGC
GCCGGGGGCCTAGGGTGCGAAATTCTGAAGAACCTGGCCTTGTCGGGCGT
GAAAGACATAGATGTGATAGACTTGGACACGATCGAGCTCTCAAACCTCA
ACCGGCAGTTCCTGTTTCGTGAGAAAGACATCGGTCGGCCAAAAGCGGTG
GTGGCGGCCGAGTTCATCATGGAGCGCGTCCCGGGTGTCACAGTCCGCGC
TCACCACGGGAAGATCCAAGAGAAGGACGCATCATTCTACAAGCAATTCT
CCATCGTCATCGCCGGCCTCGACAACATTAAGGCTCGGATCTGGTTGAAC
AGCACCCTCTTTTCCCTGGCCGAAAGAAACGAGGGCTGGAAGGAGGGCGG
GGGGGAGGGTGGGGCGGGTCTTCAATTCGATCTGGCGAGTGTCGTTCCGT
TGGTCGATGGAGGGACGGAGGGGTTCCAAGGGCAGGCGCGGGTGGTGTTG
CCCGGCCTCACGGCATGTTTTCATTGCACCCTCGACCTGTTCCCCCCGGC
CCATGCGTTCCAATTGTGCACCTTGGCAGACACGCCGAGGCAGCCGGAGC
ATTGCGTGGCGTTCGCGCAATTGCTCTTGTGGCCCGAGGCGCACCCGGAG
GGGACCGTGTTGGACGCAGACGATCCCGAACACGTCTCCTGGATCTTCAG
CAAAGCCCAAGAACGCGCGAATAAATTCGGGATCGAAGGTGTCACCCGCA
GGCTCACCCTAGGGGTGATTAAAAATATCATCCCGGCTATCGCCAGCACC
AATGCCATCGTCGCTGCCGTGAGTGTCAACGAGGCAATTAAGGTCTTGAC
CTTCATGTCGCAGATCATGAACAACTACATGATGTATCAGGGACCAGACG
GTATCTACACTTATACTACCGCCCACACCAAGAAGGACGACTGCCCTGTC
TGCGGATCTCAGGAGATCAACCTACCCCTCTCCCCTTCCCTCCTCCTCTC
TGAGGTCCTTGACCTCCTTCGATCCCATCCCTCCCTCCAGCTCGCGGCAC
CCTCCTTGTCTTGCGGAGACACTGTTCTATACATGCAGAGACCCCCTGCC
CTAGAGATCGCCACGAGGGGTAACCTGGGGAAGAAGATAGGGAACTTGCT
ACCGCGGAGTGGGGAAGTGTTATCTATCACGGACCCGAGTGTGAGTCAAT
CGGTGGCAGTTGTGTTGAACTATGAATAGGATGGATATGGCTCAATAGGA
GAGAAAAGTGTGTATGATTGAAGGGGACGAGAGGGAAAGAGGGAGGAAGG
GACGGAGGGAGGGGAAGTGGGGGGGAAGGAAGGAGGGACGGGGG

protein sequence of NO14G00840.1

>NO14G00840.1-protein ID=NO14G00840.1-protein|Name=NO14G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MKRKMDKDIPTADSAVDNTTTSSTTTMNDSAGTATGDTNRSKILTRTPPP
SSSSFSSSSSFTTTSTSTSTTNKRNGNIPHDEDDYYNDTTMDLDKVLLRP
SPFGVESGSLALGEFEPGQDLKEMLAEARVLVVGAGGLGCEILKNLALSG
VKDIDVIDLDTIELSNLNRQFLFREKDIGRPKAVVAAEFIMERVPGVTVR
AHHGKIQEKDASFYKQFSIVIAGLDNIKARIWLNSTLFSLAERNEGWKEG
GGEGGAGLQFDLASVVPLVDGGTEGFQGQARVVLPGLTACFHCTLDLFPP
AHAFQLCTLADTPRQPEHCVAFAQLLLWPEAHPEGTVLDADDPEHVSWIF
SKAQERANKFGIEGVTRRLTLGVIKNIIPAIASTNAIVAAVSVNEAIKVL
TFMSQIMNNYMMYQGPDGIYTYTTAHTKKDDCPVCGSQEINLPLSPSLLL
SEVLDLLRSHPSLQLAAPSLSCGDTVLYMQRPPALEIATRGNLGKKIGNL
LPRSGEVLSITDPSVSQSVAVVLNYE*

mRNA from alignment at chr14:294852..297668+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G00840.1 ID=NO14G00840.1|Name=NO14G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2817bp|location=Sequence derived from alignment at chr14:294852..297668+ (Nannochloropsis oceanica)
GGAGAAAACCGGCGATCGATCGGAACGAGACAGTATGCTAGTCATGGAAA
CGAGGGCCGGAGGAAGAGAGACGTGTCATCCCGCCGCCGACGCAACCATA
CACAAATCGCTGCACACATAACAGGGCCGGACAGTGCGTGTATCCCTTGC
TGCAAGCAGTGAACAGCCTGGGCGTGCGCTTCGCGACGACTCTACTCCTT
CATTTTCCTTGCCCCCGGACACAAAAATAAAGCTTGCGCTGCCCTCACCA
CTCCCAAGACGACGGCAGTTTCAACGCTCTGACAACCCCTGTCTTGGCCT
AATGGGCCTCGTTAAAGAGTAATCTATTTTTTCTTGCGTTCTATCCTTAC
AACCTCCCCTCCCTGCCCCTCCTACCCTCATCCACCTCTCCCGATAGAAT
GAAAAGGAAGATGGACAAGGACATACCAACTGCTGACTCTGCTGTCGACA
ACACCACCACCTCCAGCACCACGACCATGAACGACAGCGCGGGCACGGCC
ACGGGCGACACAAACCGCAGTAAGATCCTCACGCGTACCCCTCCCCCTTC
TTCCTCGTCCTTCTCGTCCTCCTCCTCCTTCACAACCACCTCCACCTCCA
CCTCCACCACCAACAAGCGTAATGGCAACATTCCTCATGATGAGGATGAT
TACTACAATGACACCACAATGGATTTGGACAAGGTGTTGCTGCGGCCGAG
CCCTTTTGGGGTGGAGTCGGGCTCGCTAGCTCTGGGGGAATTCGAGCCCG
GACAAGACCTGAAGGAAATGTTGGCGGAGGTAGGGAGGGGGGAGGAGCTT
CCGGGGAGGTAAATACGGAAAATGGGAAAGGATAACCATTAGAAATTGTC
TATAAATGCATGGTATTCGTATACAATTTTTATGATGTCTTTCCTTTTCC
GCAGGCACGAGTGTTGGTAGTAGGCGCCGGGGGCCTAGGGTGCGAAATTC
TGAAGAACCTGGCCTTGTCGGGCGTGAAAGACATAGATGTGATAGACTTG
GACACGATCGAGCTCTCAAACCTCAACCGGCAGTTCCTGTTTCGTGAGAA
AGGTACTGCCCTTTCCCATTCGTCGCTCCCTCTTCCCTTGCTTGCCTCCC
TCCACTCCTCCTTAGGACCTCTCCCCCCCCTTCCTCCCTCCTTCTTTCCA
TCCCCTCTTATCTCCTTCAGACATCGGTCGGCCAAAAGCGGTGGTGGCGG
CCGAGTTCATCATGGAGCGCGTCCCGGGTGTCACAGTCCGCGCTCACCAC
GGGAAGATCCAAGAGAAGGACGCATCATTCTACAAGGTATCTCCCTCCCA
CCCTCCCTCCCTCTCTCTCTCCTTCCCTCCCTCTCCCCCCATCGCAACTC
AACATCATCATCGCTGGCCTCGAAACGGGAAAACTCGGTTTGACTCATCC
ACTTTCTCCCTCCCTCCCTCCCTCCCTCCCTTTCCCCAGCAATTCTCCAT
CGTCATCGCCGGCCTCGACAACATTAAGGCTCGGATCTGGTTGAACAGCA
CCCTCTTTTCCCTGGCCGAAAGAAACGAGGGCTGGAAGGAGGGCGGGGGG
GAGGGTGGGGCGGGTCTTCAATTCGATCTGGCGAGTGTCGTTCCGTTGGT
CGATGGAGGGACGGAGGGGTTCCAAGGGCAGGCGCGGGTGGTGTTGCCCG
GCCTCACGGCATGTTTTCATTGCACCCTCGACCTGTTCCCCCCGGCCCAT
GCGTTCCAATTGTGCACCTTGGCAGACACGCCGAGGCAGCCGGAGCATTG
CGTGGCGTTCGCGCAATTGCTCTTGTGGCCCGAGGCGCACCCGGAGGGGA
CCGTGTTGGACGCAGGTAAAGAAGGGAGGGAGGAAGGGAGGGAAGGAGGG
ATGGATGGTAGGGCCCGCGGCGCATCCGGAGGGGAAGGTAATAATCATAA
AAAAATAATTAAGTAAAACAATTGATATAGTTAAACACATAAATTAAACA
AATAATACACAATACAGACGATCCCGAACACGTCTCCTGGATCTTCAGCA
AAGCCCAAGAACGCGCGAATAAATTCGGGATCGAAGGTGTCACCCGCAGG
CTCACCCTAGGGGTGATTAAAAATATCATCCCGGCTATCGCCAGCACCAA
TGCCATCGTCGCTGCCGTGAGTGTCAACGAGGCAATTAAGGTCTTGACCT
TCATGTCGCAGGTACGCCCCCCCTTCCTTCCTTCCCTCCCTCTCTCCTTC
CCTCCCTCCCTTTCTCCCCCCCTTCTCTCCTACCTCCTTCCCTCCCTTCA
TCATATCTCCGCATCGAGTCCAACTCGTCAAGCGCGTCAAAATGACGTTC
CTCCTTCCCTCCTTCCTTCCCCCCCATCTCCCTTAGATCATGAACAACTA
CATGATGTATCAGGGACCAGACGGTATCTACACTTATACTACCGCCCACA
CCAAGAAGGACGACTGCCCTGTCTGCGGATCTCAGGAGATCAACCTACCC
CTCTCCCCTTCCCTCCTCCTCTCTGAGGTCCTTGACCTCCTTCGATCCCA
TCCCTCCCTCCAGCTCGCGGCACCCTCCTTGTCTTGCGGAGACACTGTTC
TATACATGCAGAGACCCCCTGCCCTAGAGATCGCCACGAGGGGTAACCTG
GGGAAGAAGATAGGGAACTTGCTACCGCGGAGTGGGGAAGTGTTATCTAT
CACGGACCCGAGTGTGAGTCAATCGGTGGCAGTTGTGTTGAACTATGAAT
AGGATGGATATGGCTCAATAGGAGAGAAAAGTGTGTATGATTGAAGGGGA
CGAGAGGGAAAGAGGGAGGAAGGGACGGAGGGAGGGGAAGTGGGGGGGAA
GGAAGGAGGGACGGGGG

Coding sequence (CDS) from alignment at chr14:294852..297668+

>NO14G00840.1 ID=NO14G00840.1|Name=NO14G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at chr14:294852..297668+ (Nannochloropsis oceanica)
ATGAAAAGGAAGATGGACAAGGACATACCAACTGCTGACTCTGCTGTCGA
CAACACCACCACCTCCAGCACCACGACCATGAACGACAGCGCGGGCACGG
CCACGGGCGACACAAACCGCAGTAAGATCCTCACGCGTACCCCTCCCCCT
TCTTCCTCGTCCTTCTCGTCCTCCTCCTCCTTCACAACCACCTCCACCTC
CACCTCCACCACCAACAAGCGTAATGGCAACATTCCTCATGATGAGGATG
ATTACTACAATGACACCACAATGGATTTGGACAAGGTGTTGCTGCGGCCG
AGCCCTTTTGGGGTGGAGTCGGGCTCGCTAGCTCTGGGGGAATTCGAGCC
CGGACAAGACCTGAAGGAAATGTTGGCGGAGGCACGAGTGTTGGTAGTAG
GCGCCGGGGGCCTAGGGTGCGAAATTCTGAAGAACCTGGCCTTGTCGGGC
GTGAAAGACATAGATGTGATAGACTTGGACACGATCGAGCTCTCAAACCT
CAACCGGCAGTTCCTGTTTCGTGAGAAAGACATCGGTCGGCCAAAAGCGG
TGGTGGCGGCCGAGTTCATCATGGAGCGCGTCCCGGGTGTCACAGTCCGC
GCTCACCACGGGAAGATCCAAGAGAAGGACGCATCATTCTACAAGCAATT
CTCCATCGTCATCGCCGGCCTCGACAACATTAAGGCTCGGATCTGGTTGA
ACAGCACCCTCTTTTCCCTGGCCGAAAGAAACGAGGGCTGGAAGGAGGGC
GGGGGGGAGGGTGGGGCGGGTCTTCAATTCGATCTGGCGAGTGTCGTTCC
GTTGGTCGATGGAGGGACGGAGGGGTTCCAAGGGCAGGCGCGGGTGGTGT
TGCCCGGCCTCACGGCATGTTTTCATTGCACCCTCGACCTGTTCCCCCCG
GCCCATGCGTTCCAATTGTGCACCTTGGCAGACACGCCGAGGCAGCCGGA
GCATTGCGTGGCGTTCGCGCAATTGCTCTTGTGGCCCGAGGCGCACCCGG
AGGGGACCGTGTTGGACGCAGACGATCCCGAACACGTCTCCTGGATCTTC
AGCAAAGCCCAAGAACGCGCGAATAAATTCGGGATCGAAGGTGTCACCCG
CAGGCTCACCCTAGGGGTGATTAAAAATATCATCCCGGCTATCGCCAGCA
CCAATGCCATCGTCGCTGCCGTGAGTGTCAACGAGGCAATTAAGGTCTTG
ACCTTCATGTCGCAGATCATGAACAACTACATGATGTATCAGGGACCAGA
CGGTATCTACACTTATACTACCGCCCACACCAAGAAGGACGACTGCCCTG
TCTGCGGATCTCAGGAGATCAACCTACCCCTCTCCCCTTCCCTCCTCCTC
TCTGAGGTCCTTGACCTCCTTCGATCCCATCCCTCCCTCCAGCTCGCGGC
ACCCTCCTTGTCTTGCGGAGACACTGTTCTATACATGCAGAGACCCCCTG
CCCTAGAGATCGCCACGAGGGGTAACCTGGGGAAGAAGATAGGGAACTTG
CTACCGCGGAGTGGGGAAGTGTTATCTATCACGGACCCGAGTGTGAGTCA
ATCGGTGGCAGTTGTGTTGAACTATGAATAG

Synonyms

Publications