NO14G00730.1, NO14G00730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00730.1
Unique NameNO14G00730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1622
Alignment locationchr14:258900..261002 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:258900..261002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00730.1 vs.
Match: EWM24727.1 (hypothetical protein Naga_100180g10 [Nannochloropsis gaditana])

HSP 1 Score: 358.2 bits (918), Expect = 2.500e-95
Identity = 207/312 (66.35%), Postives = 233/312 (74.68%), Query Frame = 0 
Query:    1 MLHRGTPPPVVLRRPIIGVMGSGREPHVELSEPLGTWLASTGCNLLTGGGRGVMECVSRTFSEVPGREGQIIGVIPALPGSQNDDNVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEEGDDVDIAVEEFEDIKIAKNLHEVQVYLEEALERRRLRITSS---FHSLGSPNISSSPNTTMGGGGGGGGGGGGGKEAVQQRQQQQQQQQGARQSPLSSPELVKGGVGEGREEG-MMRNGAAAAVGGGGGGGGGEQEKVIGNEKGREEGRR 309
            M  RGTPPPVVLRRPIIGVMGSGREPHV LS PLG+WLASTGCNLLTGGGRGVMECVSRTFSE PGREGQIIGVIPALPG+ N+D+VIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGE+GDD+D+A++  EDIK+AK++ EV++Y+EEALERRRLR TS    F S  S + SSSPN     G    G    G+E             G R+  +      KG +GE    G ++    A    G     GGE+++  G + GR E RR
Sbjct:    1 MPQRGTPPPVVLRRPIIGVMGSGREPHVGLSAPLGSWLASTGCNLLTGGGRGVMECVSRTFSETPGREGQIIGVIPALPGASNEDSVIPPAGYPNPYTEIVIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKPLILFLGEDGDDIDLAMDGVEDIKVAKSMGEVRLYVEEALERRRLRATSQPPLFASSSSYSSSSSPNAGAAAGEKSNGTAMSGEE-------------GEREGGVE-----KGRLGEEESTGHLLVKATAEGQPGKREEEGGERQEEKGGKDGRGEVRR 294
The following BLAST results are available for this feature:
BLAST of NO14G00730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24727.12.500e-9566.35hypothetical protein Naga_100180g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00730NO14G00730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00730.1NO14G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00730.1.cds1NO14G00730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00730.1.cds2NO14G00730.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00730.1.cds3NO14G00730.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00730.1 ID=NO14G00730.1|Name=NO14G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp
ACTACAGGCCCGCCGCCTGTGCTTCCCGTCTTCCTCCCCTCCTCCCCTTC
CTCCTCCCCCTCCGTCTTCCCCCTCCACCCCCTCTTCCAGTTCCTTTTTC
CTCCTTTTTCTTCCGCGCAGACCAAAAATGCTACACCGGGGGACTCCGCC
CCCGGTGGTCTTACGCAGACCGATTATTGGCGTGATGGGCTCAGGCCGGG
AACCGCACGTGGAGCTATCCGAACCTCTAGGTACCTGGCTGGCGTCCACG
GGCTGCAATCTCCTCACAGGTGGAGGACGTGGGGTGATGGAATGTGTGTC
CCGGACGTTCTCCGAAGTCCCGGGACGGGAAGGGCAGATTATTGGCGTGA
TTCCTGCGTTGCCCGGGTCGCAGAATGATGACAATGTCATTCCGCCGGCT
GGCTACCCAAATCCCTACACTGAGATCGTCATTCGGACTCAATGTCCACT
CTCCATGCACCCTCTCACGGGCACGGAGCTCACCTCAAGAAATCACATCA
ACATTTTATCTTCTGATATTGTGGTGGCCCTGCCTGGCTCTTCAGGCACA
TGGAGCGAGATCCAGCTAGCGATCAGGTACCGCAAGCCGCTCATCCTTTT
CCTCGGGGAAGAAGGCGACGACGTCGACATAGCCGTAGAGGAGTTTGAGG
ACATTAAGATAGCCAAGAACCTGCACGAGGTGCAGGTCTACTTGGAGGAG
GCACTGGAGCGACGGCGCCTCCGCATCACGTCCTCCTTCCACTCTCTGGG
GTCTCCCAATATCTCCTCCTCCCCGAACACGACGATGGGGGGAGGAGGAG
GAGGAGGGGGAGGAGGAGGGGGAGGGAAAGAGGCTGTTCAGCAACGGCAG
CAGCAACAACAACAGCAACAAGGAGCACGGCAATCACCCCTGTCTTCGCC
TGAACTGGTGAAGGGCGGGGTTGGGGAAGGGAGGGAAGAAGGGATGATGA
GGAATGGAGCAGCAGCAGCAGTGGGTGGAGGAGGGGGAGGAGGAGGAGGA
GAGCAGGAAAAGGTGATTGGGAATGAGAAAGGGAGGGAGGAGGGAAGGAG
GGAGGGGTAGATGCTTCTGCGTGATAGCGAGGGGTCCAAAAGGAGTAAAA
AGAGAATAAGACGAGAGAGCGGCAGCAACAGCAGCGGCACCAGCTGCAGC
AGCAGCAGCAACAGCAGCAGTAACAGCAGTAACAGCAGTAACAGCAGTAA
CAGCACAAGAAGGGGGAGACGGGATGAGAGAGATCTTTAGTCCGTTCCGA
CCTTCAATATTTTGAAAATTCTTGAAGGAGGGAGGGAGGGTAGGGAGTGG
GGAGGGAGGGACGTACGTCACAGACGAAGTAGGCCGTGGTTTTGTGTCGA
GGGGACAAAAGGAGTGGCTGCTTCTGCAGTAGCTGCAAATAGAGGAGAGG
GAGGAAGAGAAGGATGAGGAAGAGGGGTTGGGGGAAAAGGACGAACGGTG
GGAGGGAGGGAGGGAGGGACGGAGGCAGGGCGATTCTCTCTTTCTTCGTG
GTTGTCGGAGGTCCTCTTGACTCAATAAATCATGAATTAATGAACAAGAA
AAGAAACCAAAAATCAAGATAGAAAAATCATTTCGCAGAACGCAGAACAG
ACAGAGAGACACGCAGAGAGGG
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protein sequence of NO14G00730.1

>NO14G00730.1-protein ID=NO14G00730.1-protein|Name=NO14G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MLHRGTPPPVVLRRPIIGVMGSGREPHVELSEPLGTWLASTGCNLLTGGG
RGVMECVSRTFSEVPGREGQIIGVIPALPGSQNDDNVIPPAGYPNPYTEI
VIRTQCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIR
YRKPLILFLGEEGDDVDIAVEEFEDIKIAKNLHEVQVYLEEALERRRLRI
TSSFHSLGSPNISSSPNTTMGGGGGGGGGGGGGKEAVQQRQQQQQQQQGA
RQSPLSSPELVKGGVGEGREEGMMRNGAAAAVGGGGGGGGGEQEKVIGNE
KGREEGRREG*
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mRNA from alignment at chr14:258900..261002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00730.1 ID=NO14G00730.1|Name=NO14G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at chr14:258900..261002- (Nannochloropsis oceanica)
ACTACAGGCCCGCCGCCTGTGCTTCCCGTCTTCCTCCCCTCCTCCCCTTC
CTCCTCCCCCTCCGTCTTCCCCCTCCACCCCCTCTTCCAGTTCCTTTTTC
CTCCTTTTTCTTCCGCGCAGACCAAAAATGCTACACCGGGGGACTCCGCC
CCCGGTGGTCTTACGCAGACCGATTATTGGCGTGATGGGCTCAGGCCGGG
AACCGCACGTGGAGCTATCCGAACCTCTAGGTACCTGGCTGGCGTCCACG
GGCTGCAATCTCCTCACAGGTGGAGGACGTGGGGTGATGGAATGTGTGTC
CCGGACGTTCTCCGAAGTCCCGGGACGGGAAGGGCAGATTATTGGCGTGA
TTCCTGCGTTGCCCGGGTCGCAGAATGATGACAATGTCATTCCGCCGGCT
GGTACGTGGGTGGGAGAGGGTTGGGATCGGAGATGGGGAAGGAGGAGGGA
TGGGAGGAAGGAAAGGGATACAATAGCACGGTTTGATATGATCGAACGCG
TGGCTTCTGGATACATGCCTTGGCAAGCCTGAAACAGTGAAACAGTAGAG
CGCTACTTCTGGCTTATGCTCACCTTTCGTCCTCCCTCCCATTTCCCTCC
CTCCTTCCCCCCTCCCGTCTCATCAGGCTACCCAAATCCCTACACTGAGA
TCGTCATTCGGACTCAATGTCCACTCTCCATGCACCCTCTCACGGGCACG
GAGCTCACCTCAAGAAATCACATCAACATTTTATCTTCTGATATTGTGGT
GGCCCTGCCTGGCTCTTCAGGCACATGGAGCGAGATCCAGCTAGCGATCA
GGTAGGCCTTTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCCCCT
CCTTCTTTTCTCCTGTCCTGATATATACGATGTGGTGGCCTTGGCTGGCG
CCTCATATGTGTGAAGTAAGTTTCTGAAAGAGCAATGATCAGGTAGTTTT
TGCCCTCCCTCCCTCCCTCCTTCCCTCCCTCTCTCCCTCCCTCCCTCCTC
CCTTCATCCAACACCCCGCCTATTGCCCCCTTCCTCTCTCCCTCCGTTCC
TCCGCAGGTACCGCAAGCCGCTCATCCTTTTCCTCGGGGAAGAAGGCGAC
GACGTCGACATAGCCGTAGAGGAGTTTGAGGACATTAAGATAGCCAAGAA
CCTGCACGAGGTGCAGGTCTACTTGGAGGAGGCACTGGAGCGACGGCGCC
TCCGCATCACGTCCTCCTTCCACTCTCTGGGGTCTCCCAATATCTCCTCC
TCCCCGAACACGACGATGGGGGGAGGAGGAGGAGGAGGGGGAGGAGGAGG
GGGAGGGAAAGAGGCTGTTCAGCAACGGCAGCAGCAACAACAACAGCAAC
AAGGAGCACGGCAATCACCCCTGTCTTCGCCTGAACTGGTGAAGGGCGGG
GTTGGGGAAGGGAGGGAAGAAGGGATGATGAGGAATGGAGCAGCAGCAGC
AGTGGGTGGAGGAGGGGGAGGAGGAGGAGGAGAGCAGGAAAAGGTGATTG
GGAATGAGAAAGGGAGGGAGGAGGGAAGGAGGGAGGGGTAGATGCTTCTG
CGTGATAGCGAGGGGTCCAAAAGGAGTAAAAAGAGAATAAGACGAGAGAG
CGGCAGCAACAGCAGCGGCACCAGCTGCAGCAGCAGCAGCAACAGCAGCA
GTAACAGCAGTAACAGCAGTAACAGCAGTAACAGCACAAGAAGGGGGAGA
CGGGATGAGAGAGATCTTTAGTCCGTTCCGACCTTCAATATTTTGAAAAT
TCTTGAAGGAGGGAGGGAGGGTAGGGAGTGGGGAGGGAGGGACGTACGTC
ACAGACGAAGTAGGCCGTGGTTTTGTGTCGAGGGGACAAAAGGAGTGGCT
GCTTCTGCAGTAGCTGCAAATAGAGGAGAGGGAGGAAGAGAAGGATGAGG
AAGAGGGGTTGGGGGAAAAGGACGAACGGTGGGAGGGAGGGAGGGAGGGA
CGGAGGCAGGGCGATTCTCTCTTTCTTCGTGGTTGTCGGAGGTCCTCTTG
ACTCAATAAATCATGAATTAATGAACAAGAAAAGAAACCAAAAATCAAGA
TAGAAAAATCATTTCGCAGAACGCAGAACAGACAGAGAGACACGCAGAGA
GGG
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Coding sequence (CDS) from alignment at chr14:258900..261002-

>NO14G00730.1 ID=NO14G00730.1|Name=NO14G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr14:258900..261002- (Nannochloropsis oceanica)
ATGCTACACCGGGGGACTCCGCCCCCGGTGGTCTTACGCAGACCGATTAT
TGGCGTGATGGGCTCAGGCCGGGAACCGCACGTGGAGCTATCCGAACCTC
TAGGTACCTGGCTGGCGTCCACGGGCTGCAATCTCCTCACAGGTGGAGGA
CGTGGGGTGATGGAATGTGTGTCCCGGACGTTCTCCGAAGTCCCGGGACG
GGAAGGGCAGATTATTGGCGTGATTCCTGCGTTGCCCGGGTCGCAGAATG
ATGACAATGTCATTCCGCCGGCTGGCTACCCAAATCCCTACACTGAGATC
GTCATTCGGACTCAATGTCCACTCTCCATGCACCCTCTCACGGGCACGGA
GCTCACCTCAAGAAATCACATCAACATTTTATCTTCTGATATTGTGGTGG
CCCTGCCTGGCTCTTCAGGCACATGGAGCGAGATCCAGCTAGCGATCAGG
TACCGCAAGCCGCTCATCCTTTTCCTCGGGGAAGAAGGCGACGACGTCGA
CATAGCCGTAGAGGAGTTTGAGGACATTAAGATAGCCAAGAACCTGCACG
AGGTGCAGGTCTACTTGGAGGAGGCACTGGAGCGACGGCGCCTCCGCATC
ACGTCCTCCTTCCACTCTCTGGGGTCTCCCAATATCTCCTCCTCCCCGAA
CACGACGATGGGGGGAGGAGGAGGAGGAGGGGGAGGAGGAGGGGGAGGGA
AAGAGGCTGTTCAGCAACGGCAGCAGCAACAACAACAGCAACAAGGAGCA
CGGCAATCACCCCTGTCTTCGCCTGAACTGGTGAAGGGCGGGGTTGGGGA
AGGGAGGGAAGAAGGGATGATGAGGAATGGAGCAGCAGCAGCAGTGGGTG
GAGGAGGGGGAGGAGGAGGAGGAGAGCAGGAAAAGGTGATTGGGAATGAG
AAAGGGAGGGAGGAGGGAAGGAGGGAGGGGTAG
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Synonyms
Publications