NO14G00720.1, NO14G00720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00720.1
Unique NameNO14G00720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length834
Alignment locationchr14:257448..258745 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:257448..258745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00720.1 vs.
Match: EWM24716.1 (yippee-like protein [Nannochloropsis gaditana])

HSP 1 Score: 199.5 bits (506), Expect = 5.600e-48
Identity = 88/105 (83.81%), Postives = 98/105 (93.33%), Query Frame = 0 
Query:    7 RCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVNVTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYILERTRIIKDPD 112
            R LDGPQ+WCCS+C THLS+NDQIISKQFTGRGGRAFL+DKV+NVTTG HEKR+LITGLHTVADI+CLDC+ L+GWKYEEAFE SQKYKEGKYILE+T I KDPD
Sbjct:   15 RYLDGPQIWCCSQCWTHLSTNDQIISKQFTGRGGRAFLYDKVINVTTGQHEKRMLITGLHTVADIFCLDCQALLGWKYEEAFEESQKYKEGKYILEKTCITKDPD 119
The following BLAST results are available for this feature:
BLAST of NO14G00720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24716.15.600e-4883.81yippee-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00720NO14G00720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00720.1NO14G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00720.1.cds1NO14G00720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00720.1.cds2NO14G00720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00720.1.cds3NO14G00720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00720.1.cds4NO14G00720.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00720.1 ID=NO14G00720.1|Name=NO14G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
GGTTTGGATGCGATGATTAAAGCGTCGAATGTGGTGCGTGCGTAACAAGC
GGTAACAAGTGCTACAAAAACATCATCGATGTGGCGCCATGAGCTTCATG
GGCAGCACATACAAGAAATCAAGCCAGCAGAGAGTCGCACGGTTTTTAAG
GCTCGACTAAATCTTTTTCTCCTCCTCACACATACACCTCACCATCACGA
CGACGACAGGCACAAAGTACGTCAACACGTGTCGGGGCAGCAGCAGCAGA
GGACAAGTTTCCAACTTGCCTCCTCAAAGGTTCTCCAATCCCGCTATCTA
TAGCTTGCGCTCACGCACTTCTGTCCTCCCTACCCAAGGCAAGCGCACAA
CTCATTCAGTTCCTTGGGGGGATGGGACGCCTCTTCATAAGGTGCTTGGA
CGGTCCTCAGGTTTGGTGCTGCTCGCGATGCCAAACGCACTTGTCATCGA
ATGACCAAATTATAAGCAAGCAATTTACGGGCCGTGGGGGCCGCGCATTT
TTGTTTGACAAAGTGGTGAACGTCACCACGGGCCCTCATGAGAAGCGCGT
GCTCATCACAGGGCTGCACACCGTGGCGGATATATACTGCCTGGACTGCG
AGACGCTCGTAGGCTGGAAGTACGAAGAAGCGTTTGAGCGAAGCCAAAAA
TATAAGGAAGGCAAATATATCTTGGAAAGGACGCGGATCATCAAGGATCC
CGACGAAGGGTGGTAAGGGAAGGAGGAAGGGAAGGAGGGAGGCAGGGTAG
GATGGTGTATATGACGGCGGTCTTGAGAGTATACGAAGAGGGGAAGCATG
TTCCGGAGGCGCTGGCTGACAAGGACCTTGACGG
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protein sequence of NO14G00720.1

>NO14G00720.1-protein ID=NO14G00720.1-protein|Name=NO14G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVN
VTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYI
LERTRIIKDPDEGW*
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mRNA from alignment at chr14:257448..258745+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00720.1 ID=NO14G00720.1|Name=NO14G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp|location=Sequence derived from alignment at chr14:257448..258745+ (Nannochloropsis oceanica)
GGTTTGGATGCGATGATTAAAGCGTCGAATGTGGTGCGTGCGTAACAAGC
GGTAACAAGTGCTACAAAAACATCATCGATGTGGCGCCATGAGCTTCATG
GGCAGCACATACAAGAAATCAAGCCAGCAGAGAGTCGCACGGTTTTTAAG
GCTCGACTAAATCTTTTTCTCCTCCTCACACATACACCTCACCATCACGA
CGACGACAGGCACAAAGTACGTCAACACGTGTCGGGGCAGCAGCAGCAGA
GGACAAGTTTCCAACTTGCCTCCTCAAAGGTTCTCCAATCCCGCTATCTA
TAGCTTGCGCTCACGCACTTCTGTCCTCCCTACCCAAGGCAAGCGCACAA
CTCATTCAGTTCCTTGGGGGGATGGGACGCCTCTTCATAAGGTACGCCGC
AAACCGTATCTCACTCCCTCGAAAACCTCCCCACACTGACAGCTCCTCCC
TCTTTCCTTCCTCCTTCCCTCCCTCCCCTTCCTACATCCAAGGTGCTTGG
ACGGTCCTCAGGTTTGGTGCTGCTCGCGATGCCAAACGCACTTGTCATCG
AATGACCAAATTATAAGCAAGCAATTTACGGGCCGTGGGGGCCGCGCATT
TTTGTTTGACAAAGTGTAAGTTAGCGATTGAAAAAGAGGGAAGAAGGGAA
GAAAAAACCTGAGGCGAGGGAAGAGGAGGCGCTCAAACGTGCTTTGCAAG
CGAAAAGAGAAATTGTGTCATGATCCGTGATGATTTTATCATCGTTTCTT
TCCACACTCGAGGACTCAAATGAGTACCCACTCGCTCCTCCTAACCCTTT
TTGGATTGATAGGGTGAACGTCACCACGGGCCCTCATGAGAAGCGCGTGC
TCATCACAGGGCTGCACACCGTGGCGGATATATACTGCCTGGACTGCGAG
GTAGGTAGGTAGGAAATGGAGCAAAGCAGCGAAGGGGGGATGGAGTGGAG
GGCTACCGAGAGCAAGAGTTTTTAAGGGGTGGAAGAAGAGAGGCCTGCAT
ATTATCGCTTGACCCTTCTCTCCCCCCCCTCCCTCCCTCCCTCCTCCTCT
CTACCTAAATCTCAAGACGCTCGTAGGCTGGAAGTACGAAGAAGCGTTTG
AGCGAAGCCAAAAATATAAGGAAGGCAAATATATCTTGGAAAGGACGCGG
ATCATCAAGGATCCCGACGAAGGGTGGTAAGGGAAGGAGGAAGGGAAGGA
GGGAGGCAGGGTAGGATGGTGTATATGACGGCGGTCTTGAGAGTATACGA
AGAGGGGAAGCATGTTCCGGAGGCGCTGGCTGACAAGGACCTTGACGG
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Coding sequence (CDS) from alignment at chr14:257448..258745+

>NO14G00720.1 ID=NO14G00720.1|Name=NO14G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at chr14:257448..258745+ (Nannochloropsis oceanica)
ATGGGACGCCTCTTCATAAGGTGCTTGGACGGTCCTCAGGTTTGGTGCTG
CTCGCGATGCCAAACGCACTTGTCATCGAATGACCAAATTATAAGCAAGC
AATTTACGGGCCGTGGGGGCCGCGCATTTTTGTTTGACAAAGTGGTGAAC
GTCACCACGGGCCCTCATGAGAAGCGCGTGCTCATCACAGGGCTGCACAC
CGTGGCGGATATATACTGCCTGGACTGCGAGACGCTCGTAGGCTGGAAGT
ACGAAGAAGCGTTTGAGCGAAGCCAAAAATATAAGGAAGGCAAATATATC
TTGGAAAGGACGCGGATCATCAAGGATCCCGACGAAGGGTGGTAA
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Synonyms
Publications