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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr14 | genome | chr14:246526..248760 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00660.1 vs.
Match: EWM24714.1 (autophagy regulatory protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 484.6 bits (1246), Expect = 4.800e-133 Identity = 247/335 (73.73%), Postives = 289/335 (86.27%), Query Frame = 0
Query: 309 EAPIEELVLRVRLLPLRVYVDQHTLDFLSAFFTLAESSSSSSSSSSSSSHPRDQPSEALAVLPSLAFFQSILIRPVKIKLDTQTRPLDVREVQRGNYAELLNLCPLKNVKLQLTAVSLRGVSGWAAVGIGIRESWVRDVTQKQIYRILMGPSAIRSMYNVGQGMADLVIVPLEQYRRDGRLLRGLRKGAIKCLRNITIEALNASVGLTKVVASTLNDLVTIEGGREGGRER-------LIQPELQPKGMREGLEHAYDSLSKGLGTAAHTIIAIPIQEMERSGPKGSMRAVIRALPIAVVKPVVGVSEALSITLLGVRNKLDPVSRREEEELWRV 637
EAP+EEL LRVRLLPLRV VD+HT+DF+S FF L ++S+ +S S+ + P L LAFFQS+L+RPVK+KLDTQTRPL++REVQRGNYAELLNLCPLKNVKLQL AV+LRG+SGWAA+G G+RESWVRDVT+KQ+YR+LMGPS IRS++N+G G+ADL+++PLE YRRDGR+ RGLRKG I+CLRN++IEALNASVG+T+ VASTLNDLV +EGGREGGRE +Q +LQPKGMREGLEHAYD+LSKG T AHTIIA+PIQEMERSGP+GS+RAVIRALPIAVVKPVVGVSEALSITLLGVRNKLDP SRREEEELWRV
Sbjct: 193 EAPVEELTLRVRLLPLRVLVDRHTIDFVSNFFALVDASARTSPPPSAGTSPA-------LPLEHLAFFQSVLVRPVKVKLDTQTRPLNLREVQRGNYAELLNLCPLKNVKLQLAAVTLRGISGWAAIGEGVRESWVRDVTEKQMYRLLMGPSPIRSVFNMGSGVADLILLPLEHYRRDGRVFRGLRKGVIRCLRNVSIEALNASVGITRAVASTLNDLVALEGGREGGREGGREGGQVWVQADLQPKGMREGLEHAYDTLSKGFSTVAHTIIAVPIQEMERSGPQGSVRAVIRALPIAVVKPVVGVSEALSITLLGVRNKLDPGSRREEEELWRV 520
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00660.1 ID=NO14G00660.1|Name=NO14G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2235bp
ATGTTCGCCGGGAGGGACTGGGGGGAGAGGGAGGACGGGAGGGGAGGGAT
GGAGGGGAGGGTGGCCGGTGCTAGGAGTGAGGAGGAAAGGCATGTGCCGA
GCTCGAAGCACTTGCAGGGTCTTTTTGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGGAGAAGGAGGAAGAGGAGGAGGAGGCACAGCTGCGGC
TACTGCTGGTTCCAGCTCTCCCTCCAAATGTAGCAGGACTGGGATTACAA
AGATGAAGAGGAGGAGGACGAGGATGGGGAGAAAGAGGAAGGGTCGTCGC
GTAGACTGCATGGTCGAGGTTTGCCTTTCGCATGCCAGTGCCCGTCTGGA
CACGCATCTCCCTCCCTCCCCCTCGCCTGCTTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCGTCTTCCTATCGTTCCTCCACCCTCATCATTCATGTC
TTGGATTTGTATGTCCTCGATCGCATCTTCTCGGTGCAGCCTCGACGGAT
TCTGGGGTATTGGAGATCAGATTCCGAGCATCCAAGGGACGGGAGTGCGC
CTATGATAGAGGTGGAAATGGCGGTTGTATGTCCATTGTACGATGCAACG
GTAGGCATGGGACGAGGAAAGGAGGGAGGGAGGGAGGGAGGGAGAGAGGG
AGGGAGGCTACCTGTTGCGTTGGAGGTGTCGGATGCCATTCCTGTGCATG
ACGTGTCTGGTGTGAGGGAGGGAGGGACGAAGGGAGGGAAGGAGGGACTC
CCTGCACAGGCGCTCCTTCCTCCCCTCCCTGGAGCGACGGAGGAGGACGA
GGGAGAAGATAACATAAAGGGTGCCGTGAAGGAGGGACAAACGAGTGCAC
AAGCAGCAACAGTGTCACCAGCACCAGCACTACCACCACCACCACAAGCA
GCACTAGCAGCAACAGCAGCACCGGAAGCGCCCATTGAAGAGCTCGTCCT
TCGCGTTCGCCTCCTCCCCCTCCGGGTCTACGTCGATCAGCACACTCTTG
ATTTCCTCTCGGCCTTCTTCACCCTTGCTGAGTCCTCCTCCTCTTCCTCC
TCATCCTCCTCCTCTTCCTCCCACCCCCGGGATCAACCTTCCGAAGCTCT
CGCCGTCCTTCCCTCCCTCGCCTTCTTCCAATCCATTCTCATCCGCCCCG
TGAAAATTAAATTGGACACCCAAACTCGTCCCTTGGACGTTCGTGAAGTC
CAACGCGGCAATTATGCCGAGCTCCTCAACCTCTGCCCGTTGAAAAACGT
TAAGTTGCAATTAACGGCTGTGTCTCTCCGGGGCGTCAGTGGATGGGCGG
CCGTGGGCATAGGCATCCGAGAGTCGTGGGTGCGTGACGTCACGCAAAAG
CAGATTTACCGGATTCTGATGGGACCTAGCGCGATTCGATCCATGTATAA
TGTGGGGCAGGGCATGGCCGACTTGGTCATTGTCCCGTTGGAGCAATATC
GGAGGGACGGCCGGTTGTTGCGCGGCTTGCGTAAAGGCGCGATTAAGTGT
TTGAGGAACATCACGATTGAGGCCTTGAACGCTTCGGTTGGTTTGACGAA
AGTGGTGGCGTCGACGCTGAACGATTTGGTGACGATCGAGGGAGGGAGGG
AGGGAGGGAGGGAGAGGTTGATCCAGCCTGAACTGCAGCCAAAGGGGATG
CGGGAGGGGTTAGAGCACGCGTACGATTCCTTGTCGAAGGGGCTGGGGAC
GGCAGCGCATACGATCATTGCGATTCCAATTCAGGAGATGGAGAGGAGTG
GGCCGAAGGGGAGTATGAGAGCGGTAATTCGCGCGCTGCCTATTGCGGTG
GTGAAGCCGGTTGTGGGCGTGTCGGAGGCGCTGTCGATCACGTTGTTGGG
AGTGAGGAATAAGCTGGACCCGGTGAGTCGGAGGGAGGAGGAGGAGTTAT
GGCGTGTATAGCTTCGTGTGCTTGAACGTTCCTGAACGTTCCTTCCTTCA
CGTATATATATACATGTAAATATCTATGAATGTAGACACACGTCCGATAA
GAAGCAGAAAAGAGAATTTTTTTTTTGAAAGATCTAGTGTAGCAAAGGTG
TGGATTGAAGGAGTAGACGGGCAGGCAGGCGGAATAGATAAAAGCAAAGA
AACAGAAATGCATTGCATGACGTGTGTTTGTGTAAATGAGAATCATTAAA
CAGGCAGCGATCGACAAGCTTCTCCCTTGTAAAGACGAAGCAACGAAGAG
GAAAGATAATTGAGTTACTTATGGGTCAACATGCT back to topprotein sequence of NO14G00660.1 >NO14G00660.1-protein ID=NO14G00660.1-protein|Name=NO14G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=637bp
MFAGRDWGEREDGRGGMEGRVAGARSEEERHVPSSKHLQGLFGGGGGGGG
GGGGGEGGRGGGGTAAATAGSSSPSKCSRTGITKMKRRRTRMGRKRKGRR
VDCMVEVCLSHASARLDTHLPPSPSPASSSSSSSSSSSSSYRSSTLIIHV
LDLYVLDRIFSVQPRRILGYWRSDSEHPRDGSAPMIEVEMAVVCPLYDAT
VGMGRGKEGGREGGREGGRLPVALEVSDAIPVHDVSGVREGGTKGGKEGL
PAQALLPPLPGATEEDEGEDNIKGAVKEGQTSAQAATVSPAPALPPPPQA
ALAATAAPEAPIEELVLRVRLLPLRVYVDQHTLDFLSAFFTLAESSSSSS
SSSSSSSHPRDQPSEALAVLPSLAFFQSILIRPVKIKLDTQTRPLDVREV
QRGNYAELLNLCPLKNVKLQLTAVSLRGVSGWAAVGIGIRESWVRDVTQK
QIYRILMGPSAIRSMYNVGQGMADLVIVPLEQYRRDGRLLRGLRKGAIKC
LRNITIEALNASVGLTKVVASTLNDLVTIEGGREGGRERLIQPELQPKGM
REGLEHAYDSLSKGLGTAAHTIIAIPIQEMERSGPKGSMRAVIRALPIAV
VKPVVGVSEALSITLLGVRNKLDPVSRREEEELWRV* back to topmRNA from alignment at chr14:246526..248760- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00660.1 ID=NO14G00660.1|Name=NO14G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2235bp|location=Sequence derived from alignment at chr14:246526..248760- (Nannochloropsis oceanica)
ATGTTCGCCGGGAGGGACTGGGGGGAGAGGGAGGACGGGAGGGGAGGGAT
GGAGGGGAGGGTGGCCGGTGCTAGGAGTGAGGAGGAAAGGCATGTGCCGA
GCTCGAAGCACTTGCAGGGTCTTTTTGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGGAGAAGGAGGAAGAGGAGGAGGAGGCACAGCTGCGGC
TACTGCTGGTTCCAGCTCTCCCTCCAAATGTAGCAGGACTGGGATTACAA
AGATGAAGAGGAGGAGGACGAGGATGGGGAGAAAGAGGAAGGGTCGTCGC
GTAGACTGCATGGTCGAGGTTTGCCTTTCGCATGCCAGTGCCCGTCTGGA
CACGCATCTCCCTCCCTCCCCCTCGCCTGCTTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCGTCTTCCTATCGTTCCTCCACCCTCATCATTCATGTC
TTGGATTTGTATGTCCTCGATCGCATCTTCTCGGTGCAGCCTCGACGGAT
TCTGGGGTATTGGAGATCAGATTCCGAGCATCCAAGGGACGGGAGTGCGC
CTATGATAGAGGTGGAAATGGCGGTTGTATGTCCATTGTACGATGCAACG
GTAGGCATGGGACGAGGAAAGGAGGGAGGGAGGGAGGGAGGGAGAGAGGG
AGGGAGGCTACCTGTTGCGTTGGAGGTGTCGGATGCCATTCCTGTGCATG
ACGTGTCTGGTGTGAGGGAGGGAGGGACGAAGGGAGGGAAGGAGGGACTC
CCTGCACAGGCGCTCCTTCCTCCCCTCCCTGGAGCGACGGAGGAGGACGA
GGGAGAAGATAACATAAAGGGTGCCGTGAAGGAGGGACAAACGAGTGCAC
AAGCAGCAACAGTGTCACCAGCACCAGCACTACCACCACCACCACAAGCA
GCACTAGCAGCAACAGCAGCACCGGAAGCGCCCATTGAAGAGCTCGTCCT
TCGCGTTCGCCTCCTCCCCCTCCGGGTCTACGTCGATCAGCACACTCTTG
ATTTCCTCTCGGCCTTCTTCACCCTTGCTGAGTCCTCCTCCTCTTCCTCC
TCATCCTCCTCCTCTTCCTCCCACCCCCGGGATCAACCTTCCGAAGCTCT
CGCCGTCCTTCCCTCCCTCGCCTTCTTCCAATCCATTCTCATCCGCCCCG
TGAAAATTAAATTGGACACCCAAACTCGTCCCTTGGACGTTCGTGAAGTC
CAACGCGGCAATTATGCCGAGCTCCTCAACCTCTGCCCGTTGAAAAACGT
TAAGTTGCAATTAACGGCTGTGTCTCTCCGGGGCGTCAGTGGATGGGCGG
CCGTGGGCATAGGCATCCGAGAGTCGTGGGTGCGTGACGTCACGCAAAAG
CAGATTTACCGGATTCTGATGGGACCTAGCGCGATTCGATCCATGTATAA
TGTGGGGCAGGGCATGGCCGACTTGGTCATTGTCCCGTTGGAGCAATATC
GGAGGGACGGCCGGTTGTTGCGCGGCTTGCGTAAAGGCGCGATTAAGTGT
TTGAGGAACATCACGATTGAGGCCTTGAACGCTTCGGTTGGTTTGACGAA
AGTGGTGGCGTCGACGCTGAACGATTTGGTGACGATCGAGGGAGGGAGGG
AGGGAGGGAGGGAGAGGTTGATCCAGCCTGAACTGCAGCCAAAGGGGATG
CGGGAGGGGTTAGAGCACGCGTACGATTCCTTGTCGAAGGGGCTGGGGAC
GGCAGCGCATACGATCATTGCGATTCCAATTCAGGAGATGGAGAGGAGTG
GGCCGAAGGGGAGTATGAGAGCGGTAATTCGCGCGCTGCCTATTGCGGTG
GTGAAGCCGGTTGTGGGCGTGTCGGAGGCGCTGTCGATCACGTTGTTGGG
AGTGAGGAATAAGCTGGACCCGGTGAGTCGGAGGGAGGAGGAGGAGTTAT
GGCGTGTATAGCTTCGTGTGCTTGAACGTTCCTGAACGTTCCTTCCTTCA
CGTATATATATACATGTAAATATCTATGAATGTAGACACACGTCCGATAA
GAAGCAGAAAAGAGAATTTTTTTTTTGAAAGATCTAGTGTAGCAAAGGTG
TGGATTGAAGGAGTAGACGGGCAGGCAGGCGGAATAGATAAAAGCAAAGA
AACAGAAATGCATTGCATGACGTGTGTTTGTGTAAATGAGAATCATTAAA
CAGGCAGCGATCGACAAGCTTCTCCCTTGTAAAGACGAAGCAACGAAGAG
GAAAGATAATTGAGTTACTTATGGGTCAACATGCT back to topCoding sequence (CDS) from alignment at chr14:246526..248760- >NO14G00660.1 ID=NO14G00660.1|Name=NO14G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=1911bp|location=Sequence derived from alignment at chr14:246526..248760- (Nannochloropsis oceanica)
ATGTTCGCCGGGAGGGACTGGGGGGAGAGGGAGGACGGGAGGGGAGGGAT
GGAGGGGAGGGTGGCCGGTGCTAGGAGTGAGGAGGAAAGGCATGTGCCGA
GCTCGAAGCACTTGCAGGGTCTTTTTGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGGAGAAGGAGGAAGAGGAGGAGGAGGCACAGCTGCGGC
TACTGCTGGTTCCAGCTCTCCCTCCAAATGTAGCAGGACTGGGATTACAA
AGATGAAGAGGAGGAGGACGAGGATGGGGAGAAAGAGGAAGGGTCGTCGC
GTAGACTGCATGGTCGAGGTTTGCCTTTCGCATGCCAGTGCCCGTCTGGA
CACGCATCTCCCTCCCTCCCCCTCGCCTGCTTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCGTCTTCCTATCGTTCCTCCACCCTCATCATTCATGTC
TTGGATTTGTATGTCCTCGATCGCATCTTCTCGGTGCAGCCTCGACGGAT
TCTGGGGTATTGGAGATCAGATTCCGAGCATCCAAGGGACGGGAGTGCGC
CTATGATAGAGGTGGAAATGGCGGTTGTATGTCCATTGTACGATGCAACG
GTAGGCATGGGACGAGGAAAGGAGGGAGGGAGGGAGGGAGGGAGAGAGGG
AGGGAGGCTACCTGTTGCGTTGGAGGTGTCGGATGCCATTCCTGTGCATG
ACGTGTCTGGTGTGAGGGAGGGAGGGACGAAGGGAGGGAAGGAGGGACTC
CCTGCACAGGCGCTCCTTCCTCCCCTCCCTGGAGCGACGGAGGAGGACGA
GGGAGAAGATAACATAAAGGGTGCCGTGAAGGAGGGACAAACGAGTGCAC
AAGCAGCAACAGTGTCACCAGCACCAGCACTACCACCACCACCACAAGCA
GCACTAGCAGCAACAGCAGCACCGGAAGCGCCCATTGAAGAGCTCGTCCT
TCGCGTTCGCCTCCTCCCCCTCCGGGTCTACGTCGATCAGCACACTCTTG
ATTTCCTCTCGGCCTTCTTCACCCTTGCTGAGTCCTCCTCCTCTTCCTCC
TCATCCTCCTCCTCTTCCTCCCACCCCCGGGATCAACCTTCCGAAGCTCT
CGCCGTCCTTCCCTCCCTCGCCTTCTTCCAATCCATTCTCATCCGCCCCG
TGAAAATTAAATTGGACACCCAAACTCGTCCCTTGGACGTTCGTGAAGTC
CAACGCGGCAATTATGCCGAGCTCCTCAACCTCTGCCCGTTGAAAAACGT
TAAGTTGCAATTAACGGCTGTGTCTCTCCGGGGCGTCAGTGGATGGGCGG
CCGTGGGCATAGGCATCCGAGAGTCGTGGGTGCGTGACGTCACGCAAAAG
CAGATTTACCGGATTCTGATGGGACCTAGCGCGATTCGATCCATGTATAA
TGTGGGGCAGGGCATGGCCGACTTGGTCATTGTCCCGTTGGAGCAATATC
GGAGGGACGGCCGGTTGTTGCGCGGCTTGCGTAAAGGCGCGATTAAGTGT
TTGAGGAACATCACGATTGAGGCCTTGAACGCTTCGGTTGGTTTGACGAA
AGTGGTGGCGTCGACGCTGAACGATTTGGTGACGATCGAGGGAGGGAGGG
AGGGAGGGAGGGAGAGGTTGATCCAGCCTGAACTGCAGCCAAAGGGGATG
CGGGAGGGGTTAGAGCACGCGTACGATTCCTTGTCGAAGGGGCTGGGGAC
GGCAGCGCATACGATCATTGCGATTCCAATTCAGGAGATGGAGAGGAGTG
GGCCGAAGGGGAGTATGAGAGCGGTAATTCGCGCGCTGCCTATTGCGGTG
GTGAAGCCGGTTGTGGGCGTGTCGGAGGCGCTGTCGATCACGTTGTTGGG
AGTGAGGAATAAGCTGGACCCGGTGAGTCGGAGGGAGGAGGAGGAGTTAT
GGCGTGTATAG back to top
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