NO14G00610.2, NO14G00610.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00610.2
Unique NameNO14G00610.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2000
Alignment locationchr14:233546..236187 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:233546..236187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00610.2 vs.
Match: WP_104738084.1 (2OG-Fe(II) oxygenase [Pseudomonas oceani]; POB03766.1 2OG-Fe(II) oxygenase [Pseudomonas oceani])

HSP 1 Score: 228.0 bits (580), Expect = 5.100e-56
Identity = 147/356 (41.29%), Postives = 191/356 (53.65%), Query Frame = 0 
Query:   58 YIPIIDLSPLHDGSMAGKQKVAQAIKLACEDVGFFIITHHGVPPSIIHNAWAAATEFFDLPTEEKEKSVKMEGSQYPYGYSGFGGEVLSHSKAYEHAHHSSSSSSSSSSLPPSLPDPKESFSIGPSD-PASGM-----------PAVRWPPSPPSFAPAIAAYYQAMETLSSSLLELFALALSLPPSFFTSLMIGHCSALRLLNYPPLPPSFPPS-LRASPHTDYGILTLLRSGGR--GLEVLRRREGEREGGGEWVAVPEVGDSFVVNLGDLMGRWTNDWWVSTMHRVVEEGEGEGGGKRRQTMAFFCNLPARVMVECLETCRREGEAEPRHKPINAMEFLLQKHHAAT--GGEK 397
            Y+PIIDL P   G+  GK +VA+A+  AC D+GF +IT H +P  +I   +A  ++FFDLP  EK K+ +        GYS    E LS+S                 + P  L   KESFSIGP+D PA              P V WP   P F  A A Y++AM  L+ +L+ +FALAL LP +FF   +  H S  R L YP L        LRA  HTDYG LT+++  G   GL+V  R        GEWV VP V D FVVN+GDLM +WTND W+ST+HRV+   E   G ++RQ++ FF      VMVECL +C  EGE  PR+ P+++ + L  K    T  GG K
Sbjct:    5 YVPIIDLGPYFGGTAEGKAEVAKAVNQACRDIGFLVITEHQIPKELIERVYALTSQFFDLPMAEKRKADRPRPDMVR-GYSAVAEESLSYSM--------------EEAAPGDL---KESFSIGPTDVPAEPYYSEAMAGPHFAPNV-WPADLPGFQQAYAEYFEAMGDLARTLMRIFALALELPETFFDDKIDKHISMFRSLRYPHLKEGIEEGQLRAGAHTDYGSLTIVKPDGAQGGLQVCNR-------DGEWVDVPYVEDGFVVNIGDLMMQWTNDQWISTLHRVINPPEDAAGDQQRQSLVFFHQPNYDVMVECLPSCLAEGET-PRYAPVSSGDHLKSKFVRQTTFGGSK 333
The following BLAST results are available for this feature:
BLAST of NO14G00610.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_104738084.15.100e-5641.292OG-Fe(II) oxygenase [Pseudomonas oceani]; POB0376... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00610NO14G00610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00610.2NO14G00610.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00610.2.cds1NO14G00610.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00610.2.cds2NO14G00610.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00610.2.cds3NO14G00610.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00610.2.cds4NO14G00610.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00610.2.cds5NO14G00610.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00610.2 ID=NO14G00610.2|Name=NO14G00610.2|organism=Nannochloropsis oceanica|type=mRNA|length=2000bp
TTGCTGATGCGTTGGTGGGTCTGTGTAATGCAATTTAAAGATGTAAGTGT
AAATGGCTGTGGGTGTAGAAGCGAGCAAAGTGCAAGTCCACGCACGAGGC
ACGCCGCGCCGTCACAAAATCAGGCGTTCGTTGCACTCAGCTGCTGCTGG
TGCTGCCCCTGCACCTGCCTTGTGCTTGTAGTTGTTTTTTTTCTCCTTCA
GCCCCAACTCCCAAGCCAGACTTTCTTGTAATCCTTTCTTAAACATGCCA
CATTCCTCTCCACGTACAACAGGCATCGGCCACGGCCGTAGCATGACCTC
CACCCTCCAAGGCGAGAGCTCGAACGAGCAGCCGCCACAGCAACACAGGG
AACAACTACCCCCTCCCCTGCTTTCTTCCTCTTCTTCCTCCTCCTCTTCT
TCGGAATACGCCTCGTATATTCCTATCATCGACCTCTCCCCTCTTCACGA
CGGCTCCATGGCAGGCAAGCAAAAAGTCGCCCAAGCCATCAAGCTCGCCT
GTGAAGATGTGGGTTTCTTCATCATCACACACCACGGCGTCCCTCCCTCC
ATTATCCACAATGCGTGGGCGGCAGCCACCGAGTTTTTCGACCTGCCTAC
GGAGGAAAAGGAAAAATCGGTCAAGATGGAGGGGAGCCAATACCCTTACG
GCTACTCTGGCTTTGGCGGCGAAGTCCTCTCTCACAGCAAGGCCTATGAA
CATGCCCACCACTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCTTCCTCC
CTCCCTTCCTGACCCCAAAGAGTCCTTCTCCATCGGTCCCTCTGACCCTG
CTTCCGGCATGCCGGCCGTTAGATGGCCACCCTCGCCCCCCTCCTTCGCG
CCCGCCATCGCCGCCTACTATCAGGCCATGGAAACCCTCTCCTCCTCCCT
CTTGGAGCTGTTCGCCCTCGCCCTCTCCCTCCCACCTTCCTTCTTCACCT
CCCTCATGATCGGCCACTGCTCTGCCCTCCGCCTCCTCAACTACCCCCCC
CTCCCTCCCTCCTTCCCTCCCTCCCTCCGCGCCTCCCCGCACACGGACTA
TGGGATCTTGACCCTCCTGCGCTCGGGCGGGAGGGGCTTGGAAGTCCTGC
GGAGGAGGGAGGGAGAGAGGGAGGGAGGGGGGGAATGGGTGGCGGTTCCG
GAGGTGGGGGATTCCTTTGTGGTTAATTTGGGCGATCTGATGGGGAGGTG
GACGAACGACTGGTGGGTCTCGACGATGCATAGAGTAGTGGAGGAGGGAG
AGGGGGAGGGAGGGGGGAAGAGGAGGCAGACCATGGCGTTTTTTTGCAAT
TTGCCGGCGAGAGTGATGGTGGAGTGCTTGGAGACGTGCCGGAGGGAGGG
GGAGGCAGAACCGAGGCACAAGCCGATTAATGCAATGGAGTTTTTGCTTC
AAAAACATCATGCGGCGACAGGCGGGGAAAAGAAGGAGTAGGGAGGGAGG
GAAGGAGGGAGAGAGGGAGGGAGGAAGCGTGTGTGTGGCACACTCGACTG
CAGGTTTTGCTGAGAAATGAATGTCATGGACAGATAGAGATGTAAATCAA
TCAAATACTCCAAGCACTGCCAGTACGAGAAACATCCAGCCCCTCGACGT
GTGAGTGTGTGTGACGTGACGTTATTGTTCTTATTGTGTTAGAAAGGTCG
TCAGGGGTGGGGCAAATGAGGCCCTGGAAACTCCCATTCTCCTTCCTTCC
TCTGATATGTGACAATAGCGGTGGCTGTTGTTTGCGTTTCGATTGCCGTA
CGTGTGGTGATGGAGGTGGTAGTCGACATTGTGGTACTTGTCATTCCTCT
CGTTAACGTTGTTGTTGCTGTGGTCATTTTTTTCTCATCTACAGTGAGTC
AGGTGGCTATTGTTGTTTTGCTTTACGTCGTTCATTCTATTATACATACA
CATCATCTTCCTCTCTTCCTCTCTTCATCCTCTTCCCCTCCCCTCTCCTC
TCCTTGTGCCCTCCCTTTGCCTTCCCCCCCACACATCGACGTCTGGCCCG
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protein sequence of NO14G00610.2

>NO14G00610.2-protein ID=NO14G00610.2-protein|Name=NO14G00610.2|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MPHSSPRTTGIGHGRSMTSTLQGESSNEQPPQQHREQLPPPLLSSSSSSS
SSSEYASYIPIIDLSPLHDGSMAGKQKVAQAIKLACEDVGFFIITHHGVP
PSIIHNAWAAATEFFDLPTEEKEKSVKMEGSQYPYGYSGFGGEVLSHSKA
YEHAHHSSSSSSSSSSLPPSLPDPKESFSIGPSDPASGMPAVRWPPSPPS
FAPAIAAYYQAMETLSSSLLELFALALSLPPSFFTSLMIGHCSALRLLNY
PPLPPSFPPSLRASPHTDYGILTLLRSGGRGLEVLRRREGEREGGGEWVA
VPEVGDSFVVNLGDLMGRWTNDWWVSTMHRVVEEGEGEGGGKRRQTMAFF
CNLPARVMVECLETCRREGEAEPRHKPINAMEFLLQKHHAATGGEKKE*
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mRNA from alignment at chr14:233546..236187-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00610.2 ID=NO14G00610.2|Name=NO14G00610.2|organism=Nannochloropsis oceanica|type=mRNA|length=2642bp|location=Sequence derived from alignment at chr14:233546..236187- (Nannochloropsis oceanica)
TTGCTGATGCGTTGGTGGGTCTGTGTAATGCAATTTAAAGATGTAAGTGT
AAATGGCTGTGGGTGTAGAAGCGAGCAAAGTGCAAGTCCACGCACGAGGC
ACGCCGCGCCGTCACAAAATCAGGCGTTCGTTGCACTCAGCTGCTGCTGG
TGCTGCCCCTGCACCTGCCTTGTGCTTGTAGTTGTTTTTTTTCTCCTTCA
GCCCCAACTCCCAAGCCAGACTTTCTTGTAATCCTTTCTTAAACATGCCA
CATTCCTCTCCACGTACAACAGGCATCGGCCACGGCCGTAGCATGACCTC
CACCCTCCAAGGCGAGAGCTCGAACGAGCAGCCGCCACAGCAACACAGGG
AACAACTACCCCCTCCCCTGCTTTCTTCCTCTTCTTCCTCCTCCTCTTCT
TCGGAATACGCCTCGTATATTCCTATCATCGACCTCTCCCCTCTTCACGA
CGGCTCCATGGCAGGCAAGCAAAAAGTCGCCCAAGCCATCAAGCTGTACG
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
CCTCCTACCTGGTACTACCCTTGCATCCTCCCTCCTCTCCCTCCCTTCCT
CCCTCTCTCAGCGCCTGTGAAGATGTGGGTTTCTTCATCATCACACACCA
CGGCGTCCCTCCCTCCATTATCCACAATGCGTGGGCGGCAGCCACCGAGT
TTTTCGACCTGCCTACGGAGGAAAAGGAAAAATCGGTCAAGATGGAGGGG
AGCCAATACCCTTACGGTAAGAACGAGGGCAGGAAGCAGGGAGGGAGGGA
GATAGGAAGGGAGGGATATTTATCAATTGATTTACTCACGATTCTTTAAG
TTACTCACTATTCCCTAATTTATCACAACTCCCCATCTCTTCCTCCCTCC
CTCCCTCCCTCCTTCCCTCAGGCTACTCTGGCTTTGGCGGCGAAGTCCTC
TCTCACAGCAAGGCCTATGAACATGCCCACCACTCCTCCTCCTCCTCCTC
CTCCTCCTCTTCCCTTCCTCCCTCCCTTCCTGACCCCAAAGAGTCCTTCT
CCATCGGTCCCTCTGACCCTGCTTCCGGCATGCCGGCCGTTAGATGGCCA
CCCTCGCCCCCCTCCTTCGCGCCCGCCATCGCCGCCTACTATCAGGTACC
TCGCTTCCTCCCTCCCTTCCTCATTCCTTCCTCCCCTCCCTCCCTCCCTC
TCTCCCTCCCTCCCACCTTTCTTTTTATCCCCCCGCTTTTCCCTCTCTCC
CTCCCTCCCTCCCTTCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCT
CCCTCTTTCTCCGGCTGTTTGTCGCAATCCATTCGTTCCATCCCTTCCCT
TTTCACCCTCCCTACTTCCCTCCTTCCTCCCTCCCTTCCTCGTTCCCTCC
AGGCCATGGAAACCCTCTCCTCCTCCCTCTTGGAGCTGTTCGCCCTCGCC
CTCTCCCTCCCACCTTCCTTCTTCACCTCCCTCATGATCGGCCACTGCTC
TGCCCTCCGCCTCCTCAACTACCCCCCCCTCCCTCCCTCCTTCCCTCCCT
CCCTCCGCGCCTCCCCGCACACGGACTATGGGATCTTGACCCTCCTGCGC
TCGGGCGGGAGGGGCTTGGAAGTCCTGCGGAGGAGGGAGGGAGAGAGGGA
GGGAGGGGGGGAATGGGTGGCGGTTCCGGAGGTGGGGGATTCCTTTGTGG
TTAATTTGGGCGATCTGATGGGGAGGTGGACGAACGACTGGTGGGTCTCG
ACGATGCATAGAGTAGTGGAGGAGGGAGAGGGGGAGGGAGGGGGGAAGAG
GAGGCAGACCATGGCGTTTTTTTGCAATTTGCCGGCGAGAGTGATGGTGG
AGTGCTTGGAGACGTGCCGGAGGGAGGGGGAGGCAGAACCGAGGTAGGAA
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGTGGGACAAACATCTTGTTGTACATGGTCTGATTCACATGCACCCACC
GCGATAGGCACAAGCCGATTAATGCAATGGAGTTTTTGCTTCAAAAACAT
CATGCGGCGACAGGCGGGGAAAAGAAGGAGTAGGGAGGGAGGGAAGGAGG
GAGAGAGGGAGGGAGGAAGCGTGTGTGTGGCACACTCGACTGCAGGTTTT
GCTGAGAAATGAATGTCATGGACAGATAGAGATGTAAATCAATCAAATAC
TCCAAGCACTGCCAGTACGAGAAACATCCAGCCCCTCGACGTGTGAGTGT
GTGTGACGTGACGTTATTGTTCTTATTGTGTTAGAAAGGTCGTCAGGGGT
GGGGCAAATGAGGCCCTGGAAACTCCCATTCTCCTTCCTTCCTCTGATAT
GTGACAATAGCGGTGGCTGTTGTTTGCGTTTCGATTGCCGTACGTGTGGT
GATGGAGGTGGTAGTCGACATTGTGGTACTTGTCATTCCTCTCGTTAACG
TTGTTGTTGCTGTGGTCATTTTTTTCTCATCTACAGTGAGTCAGGTGGCT
ATTGTTGTTTTGCTTTACGTCGTTCATTCTATTATACATACACATCATCT
TCCTCTCTTCCTCTCTTCATCCTCTTCCCCTCCCCTCTCCTCTCCTTGTG
CCCTCCCTTTGCCTTCCCCCCCACACATCGACGTCTGGCCCG
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Coding sequence (CDS) from alignment at chr14:233546..236187-

>NO14G00610.2 ID=NO14G00610.2|Name=NO14G00610.2|organism=Nannochloropsis oceanica|type=CDS|length=1197bp|location=Sequence derived from alignment at chr14:233546..236187- (Nannochloropsis oceanica)
ATGCCACATTCCTCTCCACGTACAACAGGCATCGGCCACGGCCGTAGCAT
GACCTCCACCCTCCAAGGCGAGAGCTCGAACGAGCAGCCGCCACAGCAAC
ACAGGGAACAACTACCCCCTCCCCTGCTTTCTTCCTCTTCTTCCTCCTCC
TCTTCTTCGGAATACGCCTCGTATATTCCTATCATCGACCTCTCCCCTCT
TCACGACGGCTCCATGGCAGGCAAGCAAAAAGTCGCCCAAGCCATCAAGC
TCGCCTGTGAAGATGTGGGTTTCTTCATCATCACACACCACGGCGTCCCT
CCCTCCATTATCCACAATGCGTGGGCGGCAGCCACCGAGTTTTTCGACCT
GCCTACGGAGGAAAAGGAAAAATCGGTCAAGATGGAGGGGAGCCAATACC
CTTACGGCTACTCTGGCTTTGGCGGCGAAGTCCTCTCTCACAGCAAGGCC
TATGAACATGCCCACCACTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCT
TCCTCCCTCCCTTCCTGACCCCAAAGAGTCCTTCTCCATCGGTCCCTCTG
ACCCTGCTTCCGGCATGCCGGCCGTTAGATGGCCACCCTCGCCCCCCTCC
TTCGCGCCCGCCATCGCCGCCTACTATCAGGCCATGGAAACCCTCTCCTC
CTCCCTCTTGGAGCTGTTCGCCCTCGCCCTCTCCCTCCCACCTTCCTTCT
TCACCTCCCTCATGATCGGCCACTGCTCTGCCCTCCGCCTCCTCAACTAC
CCCCCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCGCGCCTCCCCGCACAC
GGACTATGGGATCTTGACCCTCCTGCGCTCGGGCGGGAGGGGCTTGGAAG
TCCTGCGGAGGAGGGAGGGAGAGAGGGAGGGAGGGGGGGAATGGGTGGCG
GTTCCGGAGGTGGGGGATTCCTTTGTGGTTAATTTGGGCGATCTGATGGG
GAGGTGGACGAACGACTGGTGGGTCTCGACGATGCATAGAGTAGTGGAGG
AGGGAGAGGGGGAGGGAGGGGGGAAGAGGAGGCAGACCATGGCGTTTTTT
TGCAATTTGCCGGCGAGAGTGATGGTGGAGTGCTTGGAGACGTGCCGGAG
GGAGGGGGAGGCAGAACCGAGGCACAAGCCGATTAATGCAATGGAGTTTT
TGCTTCAAAAACATCATGCGGCGACAGGCGGGGAAAAGAAGGAGTAG
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Synonyms
Publications