NO14G00560.1, NO14G00560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00560.1
Unique NameNO14G00560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length546
Alignment locationchr14:219103..219648 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:219103..219648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00560.1 vs.
Match: XP_008394227.1 (PREDICTED: ferric reduction oxidase 7, chloroplastic-like isoform X1 [Malus domestica])

HSP 1 Score: 65.1 bits (157), Expect = 2.600e-7
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 0 
Query:    3 KNKNAPSAPPMSPPTLAVLVDGPYGRLSIDLQRYHQLVLVAGGIGLMPLTSLLSYISHCIRKGMMTSLKSITLVWALRDVALLEGFTTF-LDQINDELN 101
            + ++A S  P  P TL V V+GPYG        Y  LVLVAGGIG+ P  ++LS I HC+++G +  +++I +VWA++    L   +T  +D ++ +LN
Sbjct:  428 QQQSALSCTP--PTTLTVSVEGPYGHEIPYHLVYEHLVLVAGGIGISPFLAVLSDIVHCVKEGRLCQVRNILIVWAVKTSNELPLLSTIDMDSVSSKLN 524
The following BLAST results are available for this feature:
BLAST of NO14G00560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008394227.12.600e-738.38PREDICTED: ferric reduction oxidase 7, chloroplast... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00560NO14G00560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00560.1NO14G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00560.1.cds1NO14G00560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00560.1 ID=NO14G00560.1|Name=NO14G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=546bp
ATGGCGAAGAACAAAAATGCCCCAAGCGCGCCGCCCATGTCGCCGCCCAC
GTTGGCCGTTTTGGTGGATGGACCGTATGGCAGGCTTTCGATTGACCTAC
AGCGATACCATCAGCTGGTGTTAGTAGCAGGAGGAATCGGTCTCATGCCT
TTGACTTCATTGTTGTCGTATATTAGCCATTGCATTCGCAAAGGCATGAT
GACTAGTCTCAAAAGTATTACCCTTGTGTGGGCCTTACGGGATGTGGCCT
TACTTGAAGGCTTCACCACCTTCCTGGATCAGATCAATGATGAGCTGAAT
AAGCATCTGATTGAGCAACAACAGTCACAGCAGTCCTCACAGCGGCAGTG
TGTCCACTTTGGTATGCATATTTACGTGACAGCTGTCGGAGGAAATGTTG
TGCACGGGGTGAATAGCATCGGAATAGAGGATGAAAATAAGACCATGCAC
AAGGAAATAGGCGGTCGAATGCGCTTGGTGGACGGTGGGGGAGGAGGTCA
GAAGGACTTTCGCGTACTGTACGGCAGGCCCAAGATATTTTGGTAA
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protein sequence of NO14G00560.1

>NO14G00560.1-protein ID=NO14G00560.1-protein|Name=NO14G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MAKNKNAPSAPPMSPPTLAVLVDGPYGRLSIDLQRYHQLVLVAGGIGLMP
LTSLLSYISHCIRKGMMTSLKSITLVWALRDVALLEGFTTFLDQINDELN
KHLIEQQQSQQSSQRQCVHFGMHIYVTAVGGNVVHGVNSIGIEDENKTMH
KEIGGRMRLVDGGGGGQKDFRVLYGRPKIFW*
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mRNA from alignment at chr14:219103..219648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00560.1 ID=NO14G00560.1|Name=NO14G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=546bp|location=Sequence derived from alignment at chr14:219103..219648- (Nannochloropsis oceanica)
ATGGCGAAGAACAAAAATGCCCCAAGCGCGCCGCCCATGTCGCCGCCCAC
GTTGGCCGTTTTGGTGGATGGACCGTATGGCAGGCTTTCGATTGACCTAC
AGCGATACCATCAGCTGGTGTTAGTAGCAGGAGGAATCGGTCTCATGCCT
TTGACTTCATTGTTGTCGTATATTAGCCATTGCATTCGCAAAGGCATGAT
GACTAGTCTCAAAAGTATTACCCTTGTGTGGGCCTTACGGGATGTGGCCT
TACTTGAAGGCTTCACCACCTTCCTGGATCAGATCAATGATGAGCTGAAT
AAGCATCTGATTGAGCAACAACAGTCACAGCAGTCCTCACAGCGGCAGTG
TGTCCACTTTGGTATGCATATTTACGTGACAGCTGTCGGAGGAAATGTTG
TGCACGGGGTGAATAGCATCGGAATAGAGGATGAAAATAAGACCATGCAC
AAGGAAATAGGCGGTCGAATGCGCTTGGTGGACGGTGGGGGAGGAGGTCA
GAAGGACTTTCGCGTACTGTACGGCAGGCCCAAGATATTTTGGTAA
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Coding sequence (CDS) from alignment at chr14:219103..219648-

>NO14G00560.1 ID=NO14G00560.1|Name=NO14G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at chr14:219103..219648- (Nannochloropsis oceanica)
ATGGCGAAGAACAAAAATGCCCCAAGCGCGCCGCCCATGTCGCCGCCCAC
GTTGGCCGTTTTGGTGGATGGACCGTATGGCAGGCTTTCGATTGACCTAC
AGCGATACCATCAGCTGGTGTTAGTAGCAGGAGGAATCGGTCTCATGCCT
TTGACTTCATTGTTGTCGTATATTAGCCATTGCATTCGCAAAGGCATGAT
GACTAGTCTCAAAAGTATTACCCTTGTGTGGGCCTTACGGGATGTGGCCT
TACTTGAAGGCTTCACCACCTTCCTGGATCAGATCAATGATGAGCTGAAT
AAGCATCTGATTGAGCAACAACAGTCACAGCAGTCCTCACAGCGGCAGTG
TGTCCACTTTGGTATGCATATTTACGTGACAGCTGTCGGAGGAAATGTTG
TGCACGGGGTGAATAGCATCGGAATAGAGGATGAAAATAAGACCATGCAC
AAGGAAATAGGCGGTCGAATGCGCTTGGTGGACGGTGGGGGAGGAGGTCA
GAAGGACTTTCGCGTACTGTACGGCAGGCCCAAGATATTTTGGTAA
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Synonyms
Publications