NO14G00410.1, NO14G00410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00410.1
Unique NameNO14G00410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1598
Alignment locationchr14:165552..167839 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:165552..167839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G00410.1 vs.
Match: XP_005853365.1 (endonuclease exonuclease phosphatase [Nannochloropsis gaditana CCMP526]; EKU22995.1 endonuclease exonuclease phosphatase [Nannochloropsis gaditana CCMP526]; EWM24760.1 endonuclease exonuclease phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 543.5 bits (1399), Expect = 5.800e-151
Identity = 261/395 (66.08%), Postives = 308/395 (77.97%), Query Frame = 0 
Query:    9 LLLSLLAITLPLSRAYGDNYTCHFAPSVPEDRRPNPNRLRLVQYNVDFFFLDQSSGGLVCPGTDCPWPDAATAQAHALRVATVLKELRPDIVNLCEVEGCDEMQWLARHLNDAESEEEMERGDGGRERQGGFYNYYLLKGQDTFTGQNTALLTRVDPSMNLNRSISTYPYPLPGTQCGWEGGREGGRERLRLRQQYGDRIVGSGGEGEGGGGGEEGKEGHAGVSKHYFTTFELEVEGERVKLAVVGIHFLARPTDPQRCAEREAQAMVVREVVEGLVVEGYEVVVLGDFNDYDGSIPDVNNNEPTSRVLDIMKGGDNLLGSAASFVPQSDRWTDWWDRNGNCRVDAPQELDMIDHVFLTQRLMGQVVAVYIYHAYDEFCGSLDSDHYPIVVDLEW 404
            LL + L + L  + AY +NYTCHFAPS+PEDRRP+P RLR+VQ+NV+FFFLDQS GGLVCPG DCPWPDA TA AHALR+A VLKELRPDIVNLCEVEGCDE+ WLA  LN+  SE   E        Q   YNY+LLKGQDTFTGQNTALLTR+DPS +L+RS    PYPLPG+QCGWE  R         RQQ+GDR       G  GG      +G AGVSKHYFTTF L+  G  VK+A+VGIH LARP DP+RCAEREAQA V+R VV+G + EGYEVVVLGDFND+DGS+PD+NNN PTSRV++I+KG D  L   A+F+PQ++R+TDWWDRNGNC+VDAP+ELDMIDHV LT+ L  +V+AVY+YHAYDE+CG+LDSDHYP+V+DLEW
Sbjct:   31 LLFATLLLFLSSAHAYRENYTCHFAPSIPEDRRPSPYRLRIVQFNVEFFFLDQSEGGLVCPGPDCPWPDAETAHAHALRIANVLKELRPDIVNLCEVEGCDEINWLATRLNEEASERVQEEAGPDTPTQAFGYNYFLLKGQDTFTGQNTALLTRIDPSTDLDRSTDRVPYPLPGSQCGWETRRASAWAGGNFRQQFGDRT-----NGHIGGSA----DGQAGVSKHYFTTFHLQEVG--VKIAIVGIHLLARPIDPERCAEREAQATVLRGVVDGFIAEGYEVVVLGDFNDFDGSVPDINNNLPTSRVMEILKGTD--LFPTATFLPQAERYTDWWDRNGNCQVDAPEELDMIDHVLLTKGLQERVIAVYVYHAYDEYCGTLDSDHYPVVIDLEW 412
The following BLAST results are available for this feature:
BLAST of NO14G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853365.15.800e-15166.08endonuclease exonuclease phosphatase [Nannochlorop... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00410NO14G00410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00410.1NO14G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00410.1.cds1NO14G00410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00410.1.cds2NO14G00410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00410.1.cds3NO14G00410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00410.1.cds4NO14G00410.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00410.1 ID=NO14G00410.1|Name=NO14G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp
TCTTGCATGTCTTCAACCTCCCGTCCGATTCACCGCCAGTCCAACGGCCC
ACCAGGACATGTTCCCTGTCCTCCATTTGACTTCACACATGACACATACA
GCGACAAGGGGCAAGTAGTCCTTTCTCTCCAGCAAGAATTCCTTTCCCTC
TCACAAAGCTCCTTCCCACGATTTCTTGTCACAGTGTACACACAACGCTT
TCCCTGCTTTACATACCTTTCTGTACCTTTCCCCACTGGAGAGCCCTAAA
CTCTTCCGTCTTTGCTGTCGTGGTCGCCTGCCCTGGCCCGCTCAAGCGAG
TGGCCCCGTGCTCATCGTAAAAGCAGCGCATAATGAAACTTCTCCGCCAA
TTCCCCCTCCTCCTTTCCCTCCTCGCCATTACCCTCCCCCTCTCGCGCGC
TTACGGTGACAACTACACCTGCCACTTCGCGCCATCCGTTCCTGAAGACC
GTCGGCCAAACCCGAATCGCCTCCGCCTCGTGCAGTATAATGTCGACTTC
TTTTTTCTTGATCAGAGCAGTGGGGGCTTGGTGTGTCCTGGCACCGACTG
TCCCTGGCCCGACGCTGCCACAGCGCAAGCCCATGCTTTGCGAGTGGCGA
CCGTGCTGAAGGAGCTGAGGCCCGACATCGTAAATTTGTGTGAGGTGGAA
GGCTGCGATGAGATGCAGTGGCTCGCGCGGCATTTAAATGATGCGGAAAG
CGAGGAAGAGATGGAGAGGGGGGATGGAGGTAGGGAGCGCCAAGGTGGGT
TCTACAACTACTATTTACTCAAGGGACAGGACACGTTCACGGGACAAAAC
ACAGCTCTTCTAACGCGAGTGGACCCCTCCATGAATCTCAATAGGTCTAT
ATCCACCTATCCTTATCCCTTGCCGGGCACGCAGTGCGGGTGGGAAGGAG
GGAGGGAGGGAGGGAGGGAGAGGCTGCGTCTTCGGCAGCAGTACGGGGAT
CGAATTGTTGGAAGTGGAGGAGAAGGAGAGGGAGGAGGAGGAGGGGAGGA
AGGGAAGGAGGGACATGCCGGGGTGTCGAAGCATTATTTTACGACGTTCG
AATTGGAGGTAGAGGGGGAGAGGGTGAAGCTTGCGGTGGTGGGAATTCAC
TTTCTGGCGCGACCAACGGATCCCCAGAGGTGTGCAGAAAGGGAGGCTCA
GGCGATGGTGGTGAGGGAAGTGGTAGAAGGGCTGGTGGTGGAGGGGTATG
AAGTCGTCGTGCTTGGTGACTTTAACGACTATGATGGGTCCATCCCTGAC
GTGAACAACAACGAGCCCACGTCCCGCGTCCTCGACATCATGAAGGGAGG
AGATAACCTTCTTGGCAGTGCTGCCTCCTTTGTGCCTCAGTCCGACCGTT
GGACGGATTGGTGGGATCGTAACGGCAACTGCCGGGTAGATGCCCCGCAG
GAGCTGGACATGATCGACCATGTCTTCCTAACCCAACGGCTGATGGGCCA
GGTGGTGGCGGTATACATCTATCATGCCTACGACGAGTTCTGTGGGAGCC
TGGATTCCGATCACTACCCCATAGTGGTCGACCTGGAGTGGGGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGCCGGCTCTCTCTCTCGTCTAG
back to top

protein sequence of NO14G00410.1

>NO14G00410.1-protein ID=NO14G00410.1-protein|Name=NO14G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MKLLRQFPLLLSLLAITLPLSRAYGDNYTCHFAPSVPEDRRPNPNRLRLV
QYNVDFFFLDQSSGGLVCPGTDCPWPDAATAQAHALRVATVLKELRPDIV
NLCEVEGCDEMQWLARHLNDAESEEEMERGDGGRERQGGFYNYYLLKGQD
TFTGQNTALLTRVDPSMNLNRSISTYPYPLPGTQCGWEGGREGGRERLRL
RQQYGDRIVGSGGEGEGGGGGEEGKEGHAGVSKHYFTTFELEVEGERVKL
AVVGIHFLARPTDPQRCAEREAQAMVVREVVEGLVVEGYEVVVLGDFNDY
DGSIPDVNNNEPTSRVLDIMKGGDNLLGSAASFVPQSDRWTDWWDRNGNC
RVDAPQELDMIDHVFLTQRLMGQVVAVYIYHAYDEFCGSLDSDHYPIVVD
LEWGEGGREGGREGGPALSLV*
back to top

mRNA from alignment at chr14:165552..167839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00410.1 ID=NO14G00410.1|Name=NO14G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2288bp|location=Sequence derived from alignment at chr14:165552..167839+ (Nannochloropsis oceanica)
TCTTGCATGTCTTCAACCTCCCGTCCGATTCACCGCCAGTCCAACGGCCC
ACCAGGACATGTTCCCTGTCCTCCATTTGACTTCACACATGACACATACA
GCGACAAGGGGCAAGTAGTCCTTTCTCTCCAGCAAGAATTCCTTTCCCTC
TCACAAAGCTCCTTCCCACGATTTCTTGTCACAGTGTACACACAACGCTT
TCCCTGCTTTACATACCTTTCTGTACCTTTCCCCACTGGAGAGCCCTAAA
CTCTTCCGTCTTTGCTGTCGTGGTCGCCTGCCCTGGCCCGCTCAAGCGAG
TGGCCCCGTGCTCATCGTAAAAGCAGCGCATAATGAAACTTCTCCGCCAA
TTCCCCCTCCTCCTTTCCCTCCTCGCCATTACCCTCCCCCTCTCGCGCGC
TTACGGTGACAACTACACCTGCCACTTCGCGCCATCCGTTCCTGAAGACC
GTCGGCCAAACCCGAATCGCCTCCGCCTCGTGCAGTATAATGTCGACTTC
TTTTTTCTTGATCAGAGCAGTGGGGGCTTGGTGTGTCCTGGCACCGACTG
TCCCTGGCCCGACGCTGCCACAGCGCAAGCCCATGCTTTGCGAGTGGCGA
CCGTGCTGAAGGAGCTGAGGCCCGACATCGTAAATTTGTGTGAGGTGGAA
GGCTGCGATGAGATGCAGTGGCTCGCGCGGCATTTAAATGATGCGGAAAG
CGAGGAAGAGATGGAGAGGGGGGATGGAGGTAGGGAGCGCCAAGGTGGGT
TCTACAACTACTATTTACTCAAGGGACAGGACACGTTCACGGTAGGTAAT
GTAGAAGCTATGAGCATCAGGTGGGACTGACAAGCTCGGAAAAAGCGTGG
ATTTCAACCTTTGACGGGAATTCAGCCGTTCGCTTGTGAAATTTGAGCAG
GTCTGGTCATTTGAAGCCTCCGAAAGGGCCTCTGGAGTTGTAGGTGTGGA
CCTCGCCTCTTGTGCCTGCACTCATAGTCACCTGGTTCTGGGCTCCGGAG
TATGTGTATGTGTAGAAAGAGAGGGGAATTGTTCGTGCACACAGTGTTTC
TTGTGTGCCGTGCCTTTGTTCACAATAAACGCCCCCCACCCATACCATAG
CGCAAGCCCACCACCCCACCACATTCTTCCGTCTGCTTTCCTATTAATAT
TACAAATAATTCCATAAATACAGGGACAAAACACAGCTCTTCTAACGCGA
GTGGACCCCTCCATGAATCTCAATAGGTCTATATCCACCTATCCTTATCC
CTTGCCGGGCACGCAGTGCGGGTGGGAAGGAGGGAGGGAGGGAGGGAGGG
AGAGGCTGCGTCTTCGGCAGCAGTACGGGGATCGAATTGTTGGAAGTGGA
GGAGAAGGAGAGGGAGGAGGAGGAGGGGAGGAAGGGAAGGAGGGACATGC
CGGGGTGTCGAAGCATTATTTTACGACGTTCGAATTGGAGGTAGAGGGGG
AGAGGGTGAAGCTTGCGGTGGTGGGAATTCACTTTCTGGCGCGACCAACG
GATCCCCAGAGGTGTGCAGAAAGGGAGGCTCAGGCGATGGTGGTGAGGGA
AGTGGTAGAAGGGCTGGTGGTGGAGGGGTATGAAGTCGTCGTGCTTGGTG
ACTTTAACGGTGCGTGGACTTTAGGGGTGGGGTTTTCCTCCCTCCCTCCC
TCCCTCCTTCCTTCTCTCCCTCCCTCCTTCGTTTCCTTGTCCTGATGGAG
GCTGGTTTCAAGACTCACTCGTCTGTCACGTTCCTGCCCTCCCTCCCTCC
CTCCCTCCCTCAGACTATGATGGGTCCATCCCTGACGTGAACAACAACGA
GCCCACGTCCCGCGTCCTCGACATCATGAAGGGAGGAGATAACCTTCTTG
GCAGTGCTGCCTCCTTTGTGCCTCAGTCCGACCGTTGGACGGATTGGTGG
GATCGTAACGGCAACTGCCGGGTAGATGCCCCGCAGGTACGCACGACCTC
CCTTCCTCCCTCCCTCCCTCCCTCTCTCCATCCCTCCCTCTCTCCATCCC
TCCCTCGCTCTTTCCTCTTTGCTTATGCTGATGAACTCACACAGACGCCG
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCAGGAGCTGGACA
TGATCGACCATGTCTTCCTAACCCAACGGCTGATGGGCCAGGTGGTGGCG
GTATACATCTATCATGCCTACGACGAGTTCTGTGGGAGCCTGGATTCCGA
TCACTACCCCATAGTGGTCGACCTGGAGTGGGGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGCCGGCTCTCTCTCTCGTCTAG
back to top

Coding sequence (CDS) from alignment at chr14:165552..167839+

>NO14G00410.1 ID=NO14G00410.1|Name=NO14G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr14:165552..167839+ (Nannochloropsis oceanica)
ATGAAACTTCTCCGCCAATTCCCCCTCCTCCTTTCCCTCCTCGCCATTAC
CCTCCCCCTCTCGCGCGCTTACGGTGACAACTACACCTGCCACTTCGCGC
CATCCGTTCCTGAAGACCGTCGGCCAAACCCGAATCGCCTCCGCCTCGTG
CAGTATAATGTCGACTTCTTTTTTCTTGATCAGAGCAGTGGGGGCTTGGT
GTGTCCTGGCACCGACTGTCCCTGGCCCGACGCTGCCACAGCGCAAGCCC
ATGCTTTGCGAGTGGCGACCGTGCTGAAGGAGCTGAGGCCCGACATCGTA
AATTTGTGTGAGGTGGAAGGCTGCGATGAGATGCAGTGGCTCGCGCGGCA
TTTAAATGATGCGGAAAGCGAGGAAGAGATGGAGAGGGGGGATGGAGGTA
GGGAGCGCCAAGGTGGGTTCTACAACTACTATTTACTCAAGGGACAGGAC
ACGTTCACGGGACAAAACACAGCTCTTCTAACGCGAGTGGACCCCTCCAT
GAATCTCAATAGGTCTATATCCACCTATCCTTATCCCTTGCCGGGCACGC
AGTGCGGGTGGGAAGGAGGGAGGGAGGGAGGGAGGGAGAGGCTGCGTCTT
CGGCAGCAGTACGGGGATCGAATTGTTGGAAGTGGAGGAGAAGGAGAGGG
AGGAGGAGGAGGGGAGGAAGGGAAGGAGGGACATGCCGGGGTGTCGAAGC
ATTATTTTACGACGTTCGAATTGGAGGTAGAGGGGGAGAGGGTGAAGCTT
GCGGTGGTGGGAATTCACTTTCTGGCGCGACCAACGGATCCCCAGAGGTG
TGCAGAAAGGGAGGCTCAGGCGATGGTGGTGAGGGAAGTGGTAGAAGGGC
TGGTGGTGGAGGGGTATGAAGTCGTCGTGCTTGGTGACTTTAACGACTAT
GATGGGTCCATCCCTGACGTGAACAACAACGAGCCCACGTCCCGCGTCCT
CGACATCATGAAGGGAGGAGATAACCTTCTTGGCAGTGCTGCCTCCTTTG
TGCCTCAGTCCGACCGTTGGACGGATTGGTGGGATCGTAACGGCAACTGC
CGGGTAGATGCCCCGCAGGAGCTGGACATGATCGACCATGTCTTCCTAAC
CCAACGGCTGATGGGCCAGGTGGTGGCGGTATACATCTATCATGCCTACG
ACGAGTTCTGTGGGAGCCTGGATTCCGATCACTACCCCATAGTGGTCGAC
CTGGAGTGGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCCGGC
TCTCTCTCTCGTCTAG
back to top
Synonyms
Publications