NO14G00250.1, NO14G00250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00250.1
Unique NameNO14G00250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1194
Alignment locationchr14:89408..91479 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:89408..91479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00250.1 vs.
Match: EWM24769.1 (ubiquitin-conjugating enzyme e2 j1 [Nannochloropsis gaditana])

HSP 1 Score: 375.9 bits (964), Expect = 1.500e-100
Identity = 225/396 (56.82%), Postives = 255/396 (64.39%), Query Frame = 0 
Query:    1 MSEQAPKGNVKNPAIRRIHADIRELQKEPSDQYHAAPLEENLFEWHFTLRGPPASDYFNGIYHGRILLPAEYPFKPPNIMLMTPNGRFEVGKKICLSISAHHPEHWQPAWGVRLILEALISFFPTEPKGAVGSLDWTPRERQRLAVESQSWSCPRCGPAQALLPPLIHPSSSPSIEKVDEEGGEEGGKGVEQ---KSKYAEEISQLYMREMLDGTERQEEGQGGEGGGAGEERSGRGGGAEASLSESSSSSSSSAAAPAVSSGAVVPLPSLSPVLATGEGGGGGGDQGGLRRRVATTTSSSPSSLSTFASAATRPPTQLAAAEAAAAAAAATATATAGGAGGETVRVMEVEEEEEGEEEKEDKLFYLAVGLFCLLVLLVGRKMARSWAREGGAYFD 394
            M E   KGNVKNPAIRRIHADIRELQK+PSDQYHAAPLEENLFEWHFTLRGPPA+DY  G+YHGRILLPAEYPFKPPNIML+TP+GRFE+GKKICLSISAHHPEHWQPAWG  LILEALISFFPTEPKGAVGSLDWTP ER+RLAVESQSW C RCG  + LLPPL       S  K  EEG EEG  G E    K  YAE +SQLY+R   +    QEE  G +     +E  G+  G           S  S+A+P+      VP P+                +  LR++ A  TS + SSL+   SA TR  +  +AA A                           EE EGEEEKEDKLFYLAV LF LL+LLVGRK+AR+W R+ G Y +
Sbjct:   35 MDEHPRKGNVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLPPLNTVFGEES-GKEGEEGEEEGADGAENNGGKRTYAEAVSQLYVRAASESAASQEEALGED-----KEDGGQKDGGVKPYPTLKHESGGSSASPS------VPTPA----------------EPNLRQQAAAPTSITSSSLARQRSAGTRSSSINSAAVAFV-------------------------EENEGEEEKEDKLFYLAVFLFLLLILLVGRKLARAWIRQRGVYLE 376
The following BLAST results are available for this feature:
BLAST of NO14G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24769.11.500e-10056.82ubiquitin-conjugating enzyme e2 j1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00250NO14G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00250.1NO14G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00250.1.cds1NO14G00250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00250.1.cds2NO14G00250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00250.1.cds3NO14G00250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00250.1.cds4NO14G00250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00250.1.cds5NO14G00250.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00250.1.cds6NO14G00250.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00250.1 ID=NO14G00250.1|Name=NO14G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
ATGAGCGAGCAGGCCCCAAAAGGAAATGTCAAGAACCCGGCCATCCGCCG
CATCCACGCGGACATTCGGGAATTGCAAAAAGAGCCGTCAGACCAATACC
ATGCCGCCCCACTGGAGGAAAACCTATTTGAGTGGCATTTCACCTTGAGA
GGGCCTCCTGCCAGTGACTACTTTAATGGTATCTACCACGGGCGCATCCT
CCTCCCAGCAGAGTACCCATTCAAACCACCCAACATAATGCTCATGACGC
CCAACGGCCGTTTCGAGGTCGGAAAGAAGATCTGCCTCTCCATCTCTGCC
CATCATCCAGAGCATTGGCAGCCAGCTTGGGGGGTACGCCTTATTCTAGA
AGCCCTTATTTCTTTCTTTCCCACAGAGCCTAAGGGGGCCGTCGGGTCCC
TCGACTGGACGCCGCGAGAACGACAACGACTAGCGGTGGAGTCGCAAAGC
TGGAGCTGTCCTCGTTGTGGCCCGGCCCAAGCCCTCCTTCCCCCCCTCAT
TCACCCCAGCAGCAGCCCTTCTATTGAGAAAGTGGACGAGGAAGGGGGGG
AGGAAGGGGGGAAGGGAGTGGAGCAGAAGAGTAAGTACGCCGAGGAGATC
TCGCAGTTGTATATGAGGGAAATGCTGGACGGGACGGAGAGACAGGAGGA
GGGGCAGGGAGGAGAGGGAGGAGGGGCAGGAGAGGAAAGGAGTGGAAGAG
GAGGAGGGGCAGAAGCCTCTCTCTCAGAATCATCATCCTCCTCTTCCTCC
TCTGCTGCTGCTCCTGCTGTTTCCAGCGGTGCGGTGGTCCCTCTCCCTTC
TCTTTCTCCTGTGCTCGCCACAGGAGAAGGAGGAGGAGGGGGAGGAGACC
AGGGGGGACTGCGCCGTCGCGTGGCCACCACCACCTCTTCCTCCCCTTCC
TCCTTGTCGACCTTCGCCTCAGCAGCTACGAGACCACCCACACAGCTGGC
AGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAG
CAGGAGGTGCGGGGGGGGAAACAGTACGGGTTATGGAGGTGGAGGAGGAG
GAAGAAGGGGAGGAAGAGAAGGAAGACAAGCTCTTCTACCTCGCCGTTGG
CCTCTTCTGCCTGCTGGTGCTGTTGGTAGGACGAAAGATGGCGAGATCAT
GGGCGAGGGAGGGAGGGGCGTACTTTGACGGGCTAGGGTCATGA
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protein sequence of NO14G00250.1

>NO14G00250.1-protein ID=NO14G00250.1-protein|Name=NO14G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MSEQAPKGNVKNPAIRRIHADIRELQKEPSDQYHAAPLEENLFEWHFTLR
GPPASDYFNGIYHGRILLPAEYPFKPPNIMLMTPNGRFEVGKKICLSISA
HHPEHWQPAWGVRLILEALISFFPTEPKGAVGSLDWTPRERQRLAVESQS
WSCPRCGPAQALLPPLIHPSSSPSIEKVDEEGGEEGGKGVEQKSKYAEEI
SQLYMREMLDGTERQEEGQGGEGGGAGEERSGRGGGAEASLSESSSSSSS
SAAAPAVSSGAVVPLPSLSPVLATGEGGGGGGDQGGLRRRVATTTSSSPS
SLSTFASAATRPPTQLAAAEAAAAAAAATATATAGGAGGETVRVMEVEEE
EEGEEEKEDKLFYLAVGLFCLLVLLVGRKMARSWAREGGAYFDGLGS*
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mRNA from alignment at chr14:89408..91479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00250.1 ID=NO14G00250.1|Name=NO14G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2072bp|location=Sequence derived from alignment at chr14:89408..91479- (Nannochloropsis oceanica)
ATGAGCGAGCAGGCCCCAAAAGGAAATGTCAAGAACCCGGCCATCCGCCG
CATCCACGCGGTGAGTGAATGTACACAGCAAATGACGGAGGAGAAGTATA
TGTCCATTTTTTGTCAAGGCAATAGGAAGGCTCAAGCGAAGGACTTCTCG
CTCACACCCCTCCCTCCCATTCCCACCCCCCGCATGGGTGTACAGGACAT
TCGGGAATTGCAAAAAGAGCCGTCAGACCAATACCATGCCGCCCCACTGG
AGGTAGGAGTTCAAAATTTAAGGAAGATAGACAGGAAGCGGGAGTCGATG
GACGCATGGTTGCTCATCGTCTCTTCTCCTTTTCCTTCCCCCCCTCCTTC
TTTCACCCTCCCTCCCCTTCCCTCCCCTCAAGGAAAACCTATTTGAGTGG
CATTTCACCTTGAGAGGGCCTCCTGCCAGTGACTACTTTAATGGTATCTA
CCACGGGCGCATCCTCCTCCCAGCAGAGTACCCATTCAAACCACCCAACA
TAATGCTCATGACGGTAAATGAAAGCCCCTCCCTCCCTCCCTCCTTCCTT
CCCTCCCTCTCCTTGCCTCCATCCATACCCACGCATTTAATAAGCGCGCC
CACCCGCTTTCTATTCCATGGCCCGCTGCCGTTTGGCAATTAAGCCTCCT
CTACCCATCTCACCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTTC
CTCTCTCCCTCCCTCCCTCTCTCTCCCCCTCCAGCCCAACGGCCGTTTCG
AGGTCGGAAAGAAGATCTGCCTCTCCATCTCTGCCCATCATCCAGAGCAT
TGGCAGCCAGCTTGGGGGGGTGAGTGGATGAGGGAGGGAGAGAGGGAGGG
AGGGAGGGAGGGGGAGCATCCCTTGTAGCAGTAGCAGTGACAACACTGAT
TTGTCATGACTCACCTTCAACTTCCTCCCTCCCGCCTTCCGTCCCTCCTT
CGAGTCTTCCTCTTCCTCTTTACTGAAGTTCTACTTTTCCCCCACCCCAC
TGAGTCAGATGACACCTACTCCGCCTCACCCTTCCCTCCCTCCCTCCCTC
CCTCCCTCCCGCGCAGTACGCCTTATTCTAGAAGCCCTTATTTCTTTCTT
TCCCACAGAGCCTAAGGGGGCCGTCGGGTCCCTCGACTGGACGCCGCGAG
AACGACAACGACTAGCGGTGGAGGTAGGGGGGGGGGGGGGGAGGAGGGAG
GGACGGCTGGTCGACACATAAAAGGCCGAATACCTTGTCCGCGGGTTTGT
CGTCATCGTCTCACATGTCCCTCTCTTTCTTGCCACTTTCCTCCCTCCTA
TCATTGACACCATTATAAGTCGCAAAGCTGGAGCTGTCCTCGTTGTGGCC
CGGCCCAAGCCCTCCTTCCCCCCCTCATTCACCCCAGCAGCAGCCCTTCT
ATTGAGAAAGTGGACGAGGAAGGGGGGGAGGAAGGGGGGAAGGGAGTGGA
GCAGAAGAGTAAGTACGCCGAGGAGATCTCGCAGTTGTATATGAGGGAAA
TGCTGGACGGGACGGAGAGACAGGAGGAGGGGCAGGGAGGAGAGGGAGGA
GGGGCAGGAGAGGAAAGGAGTGGAAGAGGAGGAGGGGCAGAAGCCTCTCT
CTCAGAATCATCATCCTCCTCTTCCTCCTCTGCTGCTGCTCCTGCTGTTT
CCAGCGGTGCGGTGGTCCCTCTCCCTTCTCTTTCTCCTGTGCTCGCCACA
GGAGAAGGAGGAGGAGGGGGAGGAGACCAGGGGGGACTGCGCCGTCGCGT
GGCCACCACCACCTCTTCCTCCCCTTCCTCCTTGTCGACCTTCGCCTCAG
CAGCTACGAGACCACCCACACAGCTGGCAGCAGCAGAAGCAGCAGCAGCA
GCAGCAGCAGCAACAGCAACAGCAACAGCAGGAGGTGCGGGGGGGGAAAC
AGTACGGGTTATGGAGGTGGAGGAGGAGGAAGAAGGGGAGGAAGAGAAGG
AAGACAAGCTCTTCTACCTCGCCGTTGGCCTCTTCTGCCTGCTGGTGCTG
TTGGTAGGACGAAAGATGGCGAGATCATGGGCGAGGGAGGGAGGGGCGTA
CTTTGACGGGCTAGGGTCATGA
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Coding sequence (CDS) from alignment at chr14:89408..91479-

>NO14G00250.1 ID=NO14G00250.1|Name=NO14G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr14:89408..91479- (Nannochloropsis oceanica)
ATGAGCGAGCAGGCCCCAAAAGGAAATGTCAAGAACCCGGCCATCCGCCG
CATCCACGCGGACATTCGGGAATTGCAAAAAGAGCCGTCAGACCAATACC
ATGCCGCCCCACTGGAGGAAAACCTATTTGAGTGGCATTTCACCTTGAGA
GGGCCTCCTGCCAGTGACTACTTTAATGGTATCTACCACGGGCGCATCCT
CCTCCCAGCAGAGTACCCATTCAAACCACCCAACATAATGCTCATGACGC
CCAACGGCCGTTTCGAGGTCGGAAAGAAGATCTGCCTCTCCATCTCTGCC
CATCATCCAGAGCATTGGCAGCCAGCTTGGGGGGTACGCCTTATTCTAGA
AGCCCTTATTTCTTTCTTTCCCACAGAGCCTAAGGGGGCCGTCGGGTCCC
TCGACTGGACGCCGCGAGAACGACAACGACTAGCGGTGGAGTCGCAAAGC
TGGAGCTGTCCTCGTTGTGGCCCGGCCCAAGCCCTCCTTCCCCCCCTCAT
TCACCCCAGCAGCAGCCCTTCTATTGAGAAAGTGGACGAGGAAGGGGGGG
AGGAAGGGGGGAAGGGAGTGGAGCAGAAGAGTAAGTACGCCGAGGAGATC
TCGCAGTTGTATATGAGGGAAATGCTGGACGGGACGGAGAGACAGGAGGA
GGGGCAGGGAGGAGAGGGAGGAGGGGCAGGAGAGGAAAGGAGTGGAAGAG
GAGGAGGGGCAGAAGCCTCTCTCTCAGAATCATCATCCTCCTCTTCCTCC
TCTGCTGCTGCTCCTGCTGTTTCCAGCGGTGCGGTGGTCCCTCTCCCTTC
TCTTTCTCCTGTGCTCGCCACAGGAGAAGGAGGAGGAGGGGGAGGAGACC
AGGGGGGACTGCGCCGTCGCGTGGCCACCACCACCTCTTCCTCCCCTTCC
TCCTTGTCGACCTTCGCCTCAGCAGCTACGAGACCACCCACACAGCTGGC
AGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAG
CAGGAGGTGCGGGGGGGGAAACAGTACGGGTTATGGAGGTGGAGGAGGAG
GAAGAAGGGGAGGAAGAGAAGGAAGACAAGCTCTTCTACCTCGCCGTTGG
CCTCTTCTGCCTGCTGGTGCTGTTGGTAGGACGAAAGATGGCGAGATCAT
GGGCGAGGGAGGGAGGGGCGTACTTTGACGGGCTAGGGTCATGA
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Synonyms
Publications