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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:80344..83328 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00230.1 vs.
Match: WP_082093387.1 (choice-of-anchor A family protein [Demequina sediminicola]) HSP 1 Score: 77.8 bits (190), Expect = 1.600e-10 Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 0
Query: 568 PILCPSQTPTGVPSSSPSASPTASLTTEVHSASPSSSLSSSPSSSPSLSPSSSPSMSPSSSPSDSPSTSPNSSPTEMPAASPSVSSPSSLLSSPSVSPSSSPSGSPSAAPSLETNPGTTPS 689
P PS +P+ PS+SPSASP+AS + SASPS+S S+SPS SPS SPS+SPS SPS+SPS SPSTSP++SP+ P+ASPSVS +S +SPSVSPS+SPS SPS +PS +P +PS
Sbjct: 470 PSASPSVSPSTSPSTSPSASPSASPSVSP-SASPSASPSASPSVSPSTSPSTSPSASPSASPSVSPSTSPSTSPSASPSASPSVSPSASPSASPSVSPSASPSASPSVSPS--ADPSASPS 587
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00230.1 ID=NO14G00230.1|Name=NO14G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2985bp CTTGTCGTGAGCATGCCTGAAATACATGTGCGAAGGTGCTGCCGTTAGCC ACGATAATATGGAGGACATAGGGGAGAGAGGACAGGTTCCGGCGCAAGAC AGTTATCTTCTTTAACTTTCCTGACCCATTTTAATTGGTCGACCACCCGC ACTCCTTTAACCTCCCCATTTTCATTCGTCGACCTCATGCGCTCCTCCTA CAGGTAAAAAGAAAAATGAGCGACCCATCTCGGCATGTCCAACATAAATG CCATATTTACAGACTGCACTGATGTTCTGTACTTAGGGACGCAATGACAA GCATATGTTCGCACAGCTTATAGGGGGCTGTGTCCTGCGCTGGCATCGCT CTCAGAGAGAGGGCATCCTTTAGATAGCCACAAGCATGTATGCCCCTACA CATCATGACAGCCCCTTAATGAATCGGCCTTAATTCAAACGCCTTTCAGA TAAACTCCATCACACAGGAAAGAGAATGCCTTTTATCATGCTGATTACTC GCGTTGGCTGCCTCCTGGCCTGCCTCATCCTGTCCCTCATGCCAGCAGCG CACCCCCAAGTCACCGCCGATGGCTTCCACACCATCGCGCATCCCCAAGT CAACGATAATGTCTATCAGCCTATCCTTAGCGCAAATTCCCTTGGCGGTG AGAGCTGGGAGCGTGCCTATCGCTTGGTGCCAGACCTCTCCGATCCCAGC GTCAAATACTTGGCTGGTGCTTTCCAGAGCTCTACCCTTTCCTTCCCTGC TCCATCCATGGCCGCGTCCCTCAGCGCAATTGATAATGCGGCTAGCAACA CCACCCAAAATGCATTATTGTTGAAAATTCGACACGAGGATAACGCTGTG ATCTGGGCGCTCCCTATGGGAGCCAGCTCTGGGGGTGCTTCCAGGCGTAA TCAGGCATTAAGCGTCGCAGTGGGCCTCACAGGATCTGCTGTCTTTGCAG TGGGCGATTTTTCCTCCACCTCCTTTCAACTAGGGGCATTTTTATTCTCT AGTACCGGACCTTCGGATGCATGGATTGCCAAATTGGACGCAAGTGATGG CACTGTACTCTGGGCGCGCACTTTCGAAGGCACAGGTTTGGAAGCAGCCA AAAGTGTTGTGGTAGATCCCCTGTCAGGCGACGTGATCGTCGCCGGGGAT TTTAATTCGTCAAGCGCGGCATTTAATCCGGATGTCAATGACATTGGTGC CCGGGTACTCAATAATAGCGAGGACCCTAAGTGGGGTTCGGGCACGGGCA GCGACATTTGGATCGCCAAGCTTGGGGCAGCAGACGGACAAGTACACTGG ATGGGCCACGTATCGGGCTTGCGTTCGGAAGTGATGGGTTTTAACACAAC GACTGGACAGTGGCCTGTAGCTTTCGACAGCCCGGGCCAGTCTCTGGCTG TGGATGAAGACAATAATGTATATATGACGGGCTCCACCAATAGCACGGTC TTGACATACAACCCAGGAATGGATCCGCCTTCTAGTAATACATTCTGGGA CGGAGGAATAAGCAGGACGAAAAGTGATGGGATGATACTAAAGATTCGCT GCAATACAGGCCTTCTCACCTGGGGAATGACGTTTGGCATGAGGGCAACC AACGACTTTGGATATGCCGTGGCAGTTGCCCCAAACAACGGCAGCAGTGA CGTCTTTGTTGCGGGGACTGTAGGGGGTTCTCCTGTTTATTTCGGGGACC CTGTGAGGAGTGTAAGTGGAATTCGTGCGGTCCAACCATTCGTAGCCCGC CTCTCCGCACAAGATGGAACTCCGATGTGGATAACTTCTTTGGGTGTAGC TGCAAGGACGAACCGAGTGCTGGGCTTAGCCGTGGATACGACGAGAAGCC TAATTCATGCCGCAGGTTTTGTGGCATCGGGGAACTTGCCATTCGGGCAA AGTTACGGGGGTTTAACCAACGACAGCTCTACTGGCGACGGCTTTTTATG GACACTTGGAACAACAGAGGGCCATATCGAAGGTGGCATGGTAATCGCAG GCATGGGACAGGACGTATTGCATAGTGTTGCCGTTTCACCAGATGTGATT CATTTGTGTGGTTTCTTCAATTCTCCACGTGTACGCCTTGGTAATGACTC AAGCCTCATTCTAACAAATGTTGATTCGACGGGCACAACTTCTGACATTT GGTGGGGATCTTTGCGGGCCCATGTTCCAATATTATGCCCTTCTCAGACA CCGACCGGTGTTCCTTCGAGCAGCCCGTCCGCTTCTCCTACGGCATCGCT CACCACTGAGGTGCACTCCGCGTCACCATCCTCGAGCCTATCGTCGTCTC CGTCAAGCAGTCCGTCGTTGTCTCCGTCGAGCAGCCCGTCAATGTCTCCC TCGAGCAGTCCGTCTGATTCCCCCTCGACGTCGCCAAACAGCAGTCCGAC GGAGATGCCCGCTGCATCTCCATCCGTAAGCTCTCCATCGTCTCTTCTGA GCAGCCCGTCAGTGTCTCCCTCGAGCAGTCCGTCTGGTTCTCCCTCGGCT GCCCCTTCTCTTGAAACAAACCCCGGAACGACTCCTTCTACAGTTGACTT TACCATTCTGGATGAGGCCAAAGAAAAGGAAAATGCCATGGCCAAACTCC GCAAGGAGGAACGCAATCGGCGCAAAGCTTTCATCATTGGATTTTCCATC CTCGGTATTATGATAATCGCTGGATTGTCGGTATTCTATCGACGCCAGCG AGCATCCCCGCCGGTTACGCCTGCATAGAAGGATACTCCAAATGCAGTGT CTTGGCGGCCTGATTTCCTCATTTTAATTCATTACTCATGCGTCCCAATG TATCGTTAATGATCTGGCGGTGGTGCTGCTTTGAATCTCTTTCCACAATT TCTTTAAATTCTTTAATAAATTTTATTCTCCTGAGTATTTGTGTAAAAGT ACGTAAGTGCAGAAAGGGGAGAAGAAAACAGTGCACGTCATGGAACGCCA TGATTCCGCACCAGCAAAGAAACACGGCACACAAT back to topprotein sequence of NO14G00230.1 >NO14G00230.1-protein ID=NO14G00230.1-protein|Name=NO14G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=751bp MPFIMLITRVGCLLACLILSLMPAAHPQVTADGFHTIAHPQVNDNVYQPI LSANSLGGESWERAYRLVPDLSDPSVKYLAGAFQSSTLSFPAPSMAASLS AIDNAASNTTQNALLLKIRHEDNAVIWALPMGASSGGASRRNQALSVAVG LTGSAVFAVGDFSSTSFQLGAFLFSSTGPSDAWIAKLDASDGTVLWARTF EGTGLEAAKSVVVDPLSGDVIVAGDFNSSSAAFNPDVNDIGARVLNNSED PKWGSGTGSDIWIAKLGAADGQVHWMGHVSGLRSEVMGFNTTTGQWPVAF DSPGQSLAVDEDNNVYMTGSTNSTVLTYNPGMDPPSSNTFWDGGISRTKS DGMILKIRCNTGLLTWGMTFGMRATNDFGYAVAVAPNNGSSDVFVAGTVG GSPVYFGDPVRSVSGIRAVQPFVARLSAQDGTPMWITSLGVAARTNRVLG LAVDTTRSLIHAAGFVASGNLPFGQSYGGLTNDSSTGDGFLWTLGTTEGH IEGGMVIAGMGQDVLHSVAVSPDVIHLCGFFNSPRVRLGNDSSLILTNVD STGTTSDIWWGSLRAHVPILCPSQTPTGVPSSSPSASPTASLTTEVHSAS PSSSLSSSPSSSPSLSPSSSPSMSPSSSPSDSPSTSPNSSPTEMPAASPS VSSPSSLLSSPSVSPSSSPSGSPSAAPSLETNPGTTPSTVDFTILDEAKE KENAMAKLRKEERNRRKAFIIGFSILGIMIIAGLSVFYRRQRASPPVTPA * back to topmRNA from alignment at chr14:80344..83328+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00230.1 ID=NO14G00230.1|Name=NO14G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2985bp|location=Sequence derived from alignment at chr14:80344..83328+ (Nannochloropsis oceanica) CTTGTCGTGAGCATGCCTGAAATACATGTGCGAAGGTGCTGCCGTTAGCC
ACGATAATATGGAGGACATAGGGGAGAGAGGACAGGTTCCGGCGCAAGAC
AGTTATCTTCTTTAACTTTCCTGACCCATTTTAATTGGTCGACCACCCGC
ACTCCTTTAACCTCCCCATTTTCATTCGTCGACCTCATGCGCTCCTCCTA
CAGGTAAAAAGAAAAATGAGCGACCCATCTCGGCATGTCCAACATAAATG
CCATATTTACAGACTGCACTGATGTTCTGTACTTAGGGACGCAATGACAA
GCATATGTTCGCACAGCTTATAGGGGGCTGTGTCCTGCGCTGGCATCGCT
CTCAGAGAGAGGGCATCCTTTAGATAGCCACAAGCATGTATGCCCCTACA
CATCATGACAGCCCCTTAATGAATCGGCCTTAATTCAAACGCCTTTCAGA
TAAACTCCATCACACAGGAAAGAGAATGCCTTTTATCATGCTGATTACTC
GCGTTGGCTGCCTCCTGGCCTGCCTCATCCTGTCCCTCATGCCAGCAGCG
CACCCCCAAGTCACCGCCGATGGCTTCCACACCATCGCGCATCCCCAAGT
CAACGATAATGTCTATCAGCCTATCCTTAGCGCAAATTCCCTTGGCGGTG
AGAGCTGGGAGCGTGCCTATCGCTTGGTGCCAGACCTCTCCGATCCCAGC
GTCAAATACTTGGCTGGTGCTTTCCAGAGCTCTACCCTTTCCTTCCCTGC
TCCATCCATGGCCGCGTCCCTCAGCGCAATTGATAATGCGGCTAGCAACA
CCACCCAAAATGCATTATTGTTGAAAATTCGACACGAGGATAACGCTGTG
ATCTGGGCGCTCCCTATGGGAGCCAGCTCTGGGGGTGCTTCCAGGCGTAA
TCAGGCATTAAGCGTCGCAGTGGGCCTCACAGGATCTGCTGTCTTTGCAG
TGGGCGATTTTTCCTCCACCTCCTTTCAACTAGGGGCATTTTTATTCTCT
AGTACCGGACCTTCGGATGCATGGATTGCCAAATTGGACGCAAGTGATGG
CACTGTACTCTGGGCGCGCACTTTCGAAGGCACAGGTTTGGAAGCAGCCA
AAAGTGTTGTGGTAGATCCCCTGTCAGGCGACGTGATCGTCGCCGGGGAT
TTTAATTCGTCAAGCGCGGCATTTAATCCGGATGTCAATGACATTGGTGC
CCGGGTACTCAATAATAGCGAGGACCCTAAGTGGGGTTCGGGCACGGGCA
GCGACATTTGGATCGCCAAGCTTGGGGCAGCAGACGGACAAGTACACTGG
ATGGGCCACGTATCGGGCTTGCGTTCGGAAGTGATGGGTTTTAACACAAC
GACTGGACAGTGGCCTGTAGCTTTCGACAGCCCGGGCCAGTCTCTGGCTG
TGGATGAAGACAATAATGTATATATGACGGGCTCCACCAATAGCACGGTC
TTGACATACAACCCAGGAATGGATCCGCCTTCTAGTAATACATTCTGGGA
CGGAGGAATAAGCAGGACGAAAAGTGATGGGATGATACTAAAGATTCGCT
GCAATACAGGCCTTCTCACCTGGGGAATGACGTTTGGCATGAGGGCAACC
AACGACTTTGGATATGCCGTGGCAGTTGCCCCAAACAACGGCAGCAGTGA
CGTCTTTGTTGCGGGGACTGTAGGGGGTTCTCCTGTTTATTTCGGGGACC
CTGTGAGGAGTGTAAGTGGAATTCGTGCGGTCCAACCATTCGTAGCCCGC
CTCTCCGCACAAGATGGAACTCCGATGTGGATAACTTCTTTGGGTGTAGC
TGCAAGGACGAACCGAGTGCTGGGCTTAGCCGTGGATACGACGAGAAGCC
TAATTCATGCCGCAGGTTTTGTGGCATCGGGGAACTTGCCATTCGGGCAA
AGTTACGGGGGTTTAACCAACGACAGCTCTACTGGCGACGGCTTTTTATG
GACACTTGGAACAACAGAGGGCCATATCGAAGGTGGCATGGTAATCGCAG
GCATGGGACAGGACGTATTGCATAGTGTTGCCGTTTCACCAGATGTGATT
CATTTGTGTGGTTTCTTCAATTCTCCACGTGTACGCCTTGGTAATGACTC
AAGCCTCATTCTAACAAATGTTGATTCGACGGGCACAACTTCTGACATTT
GGTGGGGATCTTTGCGGGCCCATGTTCCAATATTATGCCCTTCTCAGACA
CCGACCGGTGTTCCTTCGAGCAGCCCGTCCGCTTCTCCTACGGCATCGCT
CACCACTGAGGTGCACTCCGCGTCACCATCCTCGAGCCTATCGTCGTCTC
CGTCAAGCAGTCCGTCGTTGTCTCCGTCGAGCAGCCCGTCAATGTCTCCC
TCGAGCAGTCCGTCTGATTCCCCCTCGACGTCGCCAAACAGCAGTCCGAC
GGAGATGCCCGCTGCATCTCCATCCGTAAGCTCTCCATCGTCTCTTCTGA
GCAGCCCGTCAGTGTCTCCCTCGAGCAGTCCGTCTGGTTCTCCCTCGGCT
GCCCCTTCTCTTGAAACAAACCCCGGAACGACTCCTTCTACAGTTGACTT
TACCATTCTGGATGAGGCCAAAGAAAAGGAAAATGCCATGGCCAAACTCC
GCAAGGAGGAACGCAATCGGCGCAAAGCTTTCATCATTGGATTTTCCATC
CTCGGTATTATGATAATCGCTGGATTGTCGGTATTCTATCGACGCCAGCG
AGCATCCCCGCCGGTTACGCCTGCATAGAAGGATACTCCAAATGCAGTGT
CTTGGCGGCCTGATTTCCTCATTTTAATTCATTACTCATGCGTCCCAATG
TATCGTTAATGATCTGGCGGTGGTGCTGCTTTGAATCTCTTTCCACAATT
TCTTTAAATTCTTTAATAAATTTTATTCTCCTGAGTATTTGTGTAAAAGT
ACGTAAGTGCAGAAAGGGGAGAAGAAAACAGTGCACGTCATGGAACGCCA
TGATTCCGCACCAGCAAAGAAACACGGCACACAAT back to topCoding sequence (CDS) from alignment at chr14:80344..83328+ >NO14G00230.1 ID=NO14G00230.1|Name=NO14G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=2253bp|location=Sequence derived from alignment at chr14:80344..83328+ (Nannochloropsis oceanica) ATGCCTTTTATCATGCTGATTACTCGCGTTGGCTGCCTCCTGGCCTGCCT CATCCTGTCCCTCATGCCAGCAGCGCACCCCCAAGTCACCGCCGATGGCT TCCACACCATCGCGCATCCCCAAGTCAACGATAATGTCTATCAGCCTATC CTTAGCGCAAATTCCCTTGGCGGTGAGAGCTGGGAGCGTGCCTATCGCTT GGTGCCAGACCTCTCCGATCCCAGCGTCAAATACTTGGCTGGTGCTTTCC AGAGCTCTACCCTTTCCTTCCCTGCTCCATCCATGGCCGCGTCCCTCAGC GCAATTGATAATGCGGCTAGCAACACCACCCAAAATGCATTATTGTTGAA AATTCGACACGAGGATAACGCTGTGATCTGGGCGCTCCCTATGGGAGCCA GCTCTGGGGGTGCTTCCAGGCGTAATCAGGCATTAAGCGTCGCAGTGGGC CTCACAGGATCTGCTGTCTTTGCAGTGGGCGATTTTTCCTCCACCTCCTT TCAACTAGGGGCATTTTTATTCTCTAGTACCGGACCTTCGGATGCATGGA TTGCCAAATTGGACGCAAGTGATGGCACTGTACTCTGGGCGCGCACTTTC GAAGGCACAGGTTTGGAAGCAGCCAAAAGTGTTGTGGTAGATCCCCTGTC AGGCGACGTGATCGTCGCCGGGGATTTTAATTCGTCAAGCGCGGCATTTA ATCCGGATGTCAATGACATTGGTGCCCGGGTACTCAATAATAGCGAGGAC CCTAAGTGGGGTTCGGGCACGGGCAGCGACATTTGGATCGCCAAGCTTGG GGCAGCAGACGGACAAGTACACTGGATGGGCCACGTATCGGGCTTGCGTT CGGAAGTGATGGGTTTTAACACAACGACTGGACAGTGGCCTGTAGCTTTC GACAGCCCGGGCCAGTCTCTGGCTGTGGATGAAGACAATAATGTATATAT GACGGGCTCCACCAATAGCACGGTCTTGACATACAACCCAGGAATGGATC CGCCTTCTAGTAATACATTCTGGGACGGAGGAATAAGCAGGACGAAAAGT GATGGGATGATACTAAAGATTCGCTGCAATACAGGCCTTCTCACCTGGGG AATGACGTTTGGCATGAGGGCAACCAACGACTTTGGATATGCCGTGGCAG TTGCCCCAAACAACGGCAGCAGTGACGTCTTTGTTGCGGGGACTGTAGGG GGTTCTCCTGTTTATTTCGGGGACCCTGTGAGGAGTGTAAGTGGAATTCG TGCGGTCCAACCATTCGTAGCCCGCCTCTCCGCACAAGATGGAACTCCGA TGTGGATAACTTCTTTGGGTGTAGCTGCAAGGACGAACCGAGTGCTGGGC TTAGCCGTGGATACGACGAGAAGCCTAATTCATGCCGCAGGTTTTGTGGC ATCGGGGAACTTGCCATTCGGGCAAAGTTACGGGGGTTTAACCAACGACA GCTCTACTGGCGACGGCTTTTTATGGACACTTGGAACAACAGAGGGCCAT ATCGAAGGTGGCATGGTAATCGCAGGCATGGGACAGGACGTATTGCATAG TGTTGCCGTTTCACCAGATGTGATTCATTTGTGTGGTTTCTTCAATTCTC CACGTGTACGCCTTGGTAATGACTCAAGCCTCATTCTAACAAATGTTGAT TCGACGGGCACAACTTCTGACATTTGGTGGGGATCTTTGCGGGCCCATGT TCCAATATTATGCCCTTCTCAGACACCGACCGGTGTTCCTTCGAGCAGCC CGTCCGCTTCTCCTACGGCATCGCTCACCACTGAGGTGCACTCCGCGTCA CCATCCTCGAGCCTATCGTCGTCTCCGTCAAGCAGTCCGTCGTTGTCTCC GTCGAGCAGCCCGTCAATGTCTCCCTCGAGCAGTCCGTCTGATTCCCCCT CGACGTCGCCAAACAGCAGTCCGACGGAGATGCCCGCTGCATCTCCATCC GTAAGCTCTCCATCGTCTCTTCTGAGCAGCCCGTCAGTGTCTCCCTCGAG CAGTCCGTCTGGTTCTCCCTCGGCTGCCCCTTCTCTTGAAACAAACCCCG GAACGACTCCTTCTACAGTTGACTTTACCATTCTGGATGAGGCCAAAGAA AAGGAAAATGCCATGGCCAAACTCCGCAAGGAGGAACGCAATCGGCGCAA AGCTTTCATCATTGGATTTTCCATCCTCGGTATTATGATAATCGCTGGAT TGTCGGTATTCTATCGACGCCAGCGAGCATCCCCGCCGGTTACGCCTGCA TAG back to top
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