NO14G00230.1, NO14G00230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00230.1
Unique NameNO14G00230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2985
Alignment locationchr14:80344..83328 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:80344..83328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO14G00230.1 vs.
Match: WP_082093387.1 (choice-of-anchor A family protein [Demequina sediminicola])

HSP 1 Score: 77.8 bits (190), Expect = 1.600e-10
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 0
Query:  568 PILCPSQTPTGVPSSSPSASPTASLTTEVHSASPSSSLSSSPSSSPSLSPSSSPSMSPSSSPSDSPSTSPNSSPTEMPAASPSVSSPSSLLSSPSVSPSSSPSGSPSAAPSLETNPGTTPS 689
            P   PS +P+  PS+SPSASP+AS +    SASPS+S S+SPS SPS SPS+SPS SPS+SPS SPSTSP++SP+  P+ASPSVS  +S  +SPSVSPS+SPS SPS +PS   +P  +PS
Sbjct:  470 PSASPSVSPSTSPSTSPSASPSASPSVSP-SASPSASPSASPSVSPSTSPSTSPSASPSASPSVSPSTSPSTSPSASPSASPSVSPSASPSASPSVSPSASPSASPSVSPS--ADPSASPS 587          
The following BLAST results are available for this feature:
BLAST of NO14G00230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_082093387.11.600e-1060.33choice-of-anchor A family protein [Demequina sedim... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00230NO14G00230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00230.1NO14G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00230.1.cds1NO14G00230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00230.1 ID=NO14G00230.1|Name=NO14G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2985bp
CTTGTCGTGAGCATGCCTGAAATACATGTGCGAAGGTGCTGCCGTTAGCC
ACGATAATATGGAGGACATAGGGGAGAGAGGACAGGTTCCGGCGCAAGAC
AGTTATCTTCTTTAACTTTCCTGACCCATTTTAATTGGTCGACCACCCGC
ACTCCTTTAACCTCCCCATTTTCATTCGTCGACCTCATGCGCTCCTCCTA
CAGGTAAAAAGAAAAATGAGCGACCCATCTCGGCATGTCCAACATAAATG
CCATATTTACAGACTGCACTGATGTTCTGTACTTAGGGACGCAATGACAA
GCATATGTTCGCACAGCTTATAGGGGGCTGTGTCCTGCGCTGGCATCGCT
CTCAGAGAGAGGGCATCCTTTAGATAGCCACAAGCATGTATGCCCCTACA
CATCATGACAGCCCCTTAATGAATCGGCCTTAATTCAAACGCCTTTCAGA
TAAACTCCATCACACAGGAAAGAGAATGCCTTTTATCATGCTGATTACTC
GCGTTGGCTGCCTCCTGGCCTGCCTCATCCTGTCCCTCATGCCAGCAGCG
CACCCCCAAGTCACCGCCGATGGCTTCCACACCATCGCGCATCCCCAAGT
CAACGATAATGTCTATCAGCCTATCCTTAGCGCAAATTCCCTTGGCGGTG
AGAGCTGGGAGCGTGCCTATCGCTTGGTGCCAGACCTCTCCGATCCCAGC
GTCAAATACTTGGCTGGTGCTTTCCAGAGCTCTACCCTTTCCTTCCCTGC
TCCATCCATGGCCGCGTCCCTCAGCGCAATTGATAATGCGGCTAGCAACA
CCACCCAAAATGCATTATTGTTGAAAATTCGACACGAGGATAACGCTGTG
ATCTGGGCGCTCCCTATGGGAGCCAGCTCTGGGGGTGCTTCCAGGCGTAA
TCAGGCATTAAGCGTCGCAGTGGGCCTCACAGGATCTGCTGTCTTTGCAG
TGGGCGATTTTTCCTCCACCTCCTTTCAACTAGGGGCATTTTTATTCTCT
AGTACCGGACCTTCGGATGCATGGATTGCCAAATTGGACGCAAGTGATGG
CACTGTACTCTGGGCGCGCACTTTCGAAGGCACAGGTTTGGAAGCAGCCA
AAAGTGTTGTGGTAGATCCCCTGTCAGGCGACGTGATCGTCGCCGGGGAT
TTTAATTCGTCAAGCGCGGCATTTAATCCGGATGTCAATGACATTGGTGC
CCGGGTACTCAATAATAGCGAGGACCCTAAGTGGGGTTCGGGCACGGGCA
GCGACATTTGGATCGCCAAGCTTGGGGCAGCAGACGGACAAGTACACTGG
ATGGGCCACGTATCGGGCTTGCGTTCGGAAGTGATGGGTTTTAACACAAC
GACTGGACAGTGGCCTGTAGCTTTCGACAGCCCGGGCCAGTCTCTGGCTG
TGGATGAAGACAATAATGTATATATGACGGGCTCCACCAATAGCACGGTC
TTGACATACAACCCAGGAATGGATCCGCCTTCTAGTAATACATTCTGGGA
CGGAGGAATAAGCAGGACGAAAAGTGATGGGATGATACTAAAGATTCGCT
GCAATACAGGCCTTCTCACCTGGGGAATGACGTTTGGCATGAGGGCAACC
AACGACTTTGGATATGCCGTGGCAGTTGCCCCAAACAACGGCAGCAGTGA
CGTCTTTGTTGCGGGGACTGTAGGGGGTTCTCCTGTTTATTTCGGGGACC
CTGTGAGGAGTGTAAGTGGAATTCGTGCGGTCCAACCATTCGTAGCCCGC
CTCTCCGCACAAGATGGAACTCCGATGTGGATAACTTCTTTGGGTGTAGC
TGCAAGGACGAACCGAGTGCTGGGCTTAGCCGTGGATACGACGAGAAGCC
TAATTCATGCCGCAGGTTTTGTGGCATCGGGGAACTTGCCATTCGGGCAA
AGTTACGGGGGTTTAACCAACGACAGCTCTACTGGCGACGGCTTTTTATG
GACACTTGGAACAACAGAGGGCCATATCGAAGGTGGCATGGTAATCGCAG
GCATGGGACAGGACGTATTGCATAGTGTTGCCGTTTCACCAGATGTGATT
CATTTGTGTGGTTTCTTCAATTCTCCACGTGTACGCCTTGGTAATGACTC
AAGCCTCATTCTAACAAATGTTGATTCGACGGGCACAACTTCTGACATTT
GGTGGGGATCTTTGCGGGCCCATGTTCCAATATTATGCCCTTCTCAGACA
CCGACCGGTGTTCCTTCGAGCAGCCCGTCCGCTTCTCCTACGGCATCGCT
CACCACTGAGGTGCACTCCGCGTCACCATCCTCGAGCCTATCGTCGTCTC
CGTCAAGCAGTCCGTCGTTGTCTCCGTCGAGCAGCCCGTCAATGTCTCCC
TCGAGCAGTCCGTCTGATTCCCCCTCGACGTCGCCAAACAGCAGTCCGAC
GGAGATGCCCGCTGCATCTCCATCCGTAAGCTCTCCATCGTCTCTTCTGA
GCAGCCCGTCAGTGTCTCCCTCGAGCAGTCCGTCTGGTTCTCCCTCGGCT
GCCCCTTCTCTTGAAACAAACCCCGGAACGACTCCTTCTACAGTTGACTT
TACCATTCTGGATGAGGCCAAAGAAAAGGAAAATGCCATGGCCAAACTCC
GCAAGGAGGAACGCAATCGGCGCAAAGCTTTCATCATTGGATTTTCCATC
CTCGGTATTATGATAATCGCTGGATTGTCGGTATTCTATCGACGCCAGCG
AGCATCCCCGCCGGTTACGCCTGCATAGAAGGATACTCCAAATGCAGTGT
CTTGGCGGCCTGATTTCCTCATTTTAATTCATTACTCATGCGTCCCAATG
TATCGTTAATGATCTGGCGGTGGTGCTGCTTTGAATCTCTTTCCACAATT
TCTTTAAATTCTTTAATAAATTTTATTCTCCTGAGTATTTGTGTAAAAGT
ACGTAAGTGCAGAAAGGGGAGAAGAAAACAGTGCACGTCATGGAACGCCA
TGATTCCGCACCAGCAAAGAAACACGGCACACAAT
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protein sequence of NO14G00230.1

>NO14G00230.1-protein ID=NO14G00230.1-protein|Name=NO14G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=751bp
MPFIMLITRVGCLLACLILSLMPAAHPQVTADGFHTIAHPQVNDNVYQPI
LSANSLGGESWERAYRLVPDLSDPSVKYLAGAFQSSTLSFPAPSMAASLS
AIDNAASNTTQNALLLKIRHEDNAVIWALPMGASSGGASRRNQALSVAVG
LTGSAVFAVGDFSSTSFQLGAFLFSSTGPSDAWIAKLDASDGTVLWARTF
EGTGLEAAKSVVVDPLSGDVIVAGDFNSSSAAFNPDVNDIGARVLNNSED
PKWGSGTGSDIWIAKLGAADGQVHWMGHVSGLRSEVMGFNTTTGQWPVAF
DSPGQSLAVDEDNNVYMTGSTNSTVLTYNPGMDPPSSNTFWDGGISRTKS
DGMILKIRCNTGLLTWGMTFGMRATNDFGYAVAVAPNNGSSDVFVAGTVG
GSPVYFGDPVRSVSGIRAVQPFVARLSAQDGTPMWITSLGVAARTNRVLG
LAVDTTRSLIHAAGFVASGNLPFGQSYGGLTNDSSTGDGFLWTLGTTEGH
IEGGMVIAGMGQDVLHSVAVSPDVIHLCGFFNSPRVRLGNDSSLILTNVD
STGTTSDIWWGSLRAHVPILCPSQTPTGVPSSSPSASPTASLTTEVHSAS
PSSSLSSSPSSSPSLSPSSSPSMSPSSSPSDSPSTSPNSSPTEMPAASPS
VSSPSSLLSSPSVSPSSSPSGSPSAAPSLETNPGTTPSTVDFTILDEAKE
KENAMAKLRKEERNRRKAFIIGFSILGIMIIAGLSVFYRRQRASPPVTPA
*
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mRNA from alignment at chr14:80344..83328+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00230.1 ID=NO14G00230.1|Name=NO14G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2985bp|location=Sequence derived from alignment at chr14:80344..83328+ (Nannochloropsis oceanica)
CTTGTCGTGAGCATGCCTGAAATACATGTGCGAAGGTGCTGCCGTTAGCC ACGATAATATGGAGGACATAGGGGAGAGAGGACAGGTTCCGGCGCAAGAC AGTTATCTTCTTTAACTTTCCTGACCCATTTTAATTGGTCGACCACCCGC ACTCCTTTAACCTCCCCATTTTCATTCGTCGACCTCATGCGCTCCTCCTA CAGGTAAAAAGAAAAATGAGCGACCCATCTCGGCATGTCCAACATAAATG CCATATTTACAGACTGCACTGATGTTCTGTACTTAGGGACGCAATGACAA GCATATGTTCGCACAGCTTATAGGGGGCTGTGTCCTGCGCTGGCATCGCT CTCAGAGAGAGGGCATCCTTTAGATAGCCACAAGCATGTATGCCCCTACA CATCATGACAGCCCCTTAATGAATCGGCCTTAATTCAAACGCCTTTCAGA TAAACTCCATCACACAGGAAAGAGAATGCCTTTTATCATGCTGATTACTC GCGTTGGCTGCCTCCTGGCCTGCCTCATCCTGTCCCTCATGCCAGCAGCG CACCCCCAAGTCACCGCCGATGGCTTCCACACCATCGCGCATCCCCAAGT CAACGATAATGTCTATCAGCCTATCCTTAGCGCAAATTCCCTTGGCGGTG AGAGCTGGGAGCGTGCCTATCGCTTGGTGCCAGACCTCTCCGATCCCAGC GTCAAATACTTGGCTGGTGCTTTCCAGAGCTCTACCCTTTCCTTCCCTGC TCCATCCATGGCCGCGTCCCTCAGCGCAATTGATAATGCGGCTAGCAACA CCACCCAAAATGCATTATTGTTGAAAATTCGACACGAGGATAACGCTGTG ATCTGGGCGCTCCCTATGGGAGCCAGCTCTGGGGGTGCTTCCAGGCGTAA TCAGGCATTAAGCGTCGCAGTGGGCCTCACAGGATCTGCTGTCTTTGCAG TGGGCGATTTTTCCTCCACCTCCTTTCAACTAGGGGCATTTTTATTCTCT AGTACCGGACCTTCGGATGCATGGATTGCCAAATTGGACGCAAGTGATGG CACTGTACTCTGGGCGCGCACTTTCGAAGGCACAGGTTTGGAAGCAGCCA AAAGTGTTGTGGTAGATCCCCTGTCAGGCGACGTGATCGTCGCCGGGGAT TTTAATTCGTCAAGCGCGGCATTTAATCCGGATGTCAATGACATTGGTGC CCGGGTACTCAATAATAGCGAGGACCCTAAGTGGGGTTCGGGCACGGGCA GCGACATTTGGATCGCCAAGCTTGGGGCAGCAGACGGACAAGTACACTGG ATGGGCCACGTATCGGGCTTGCGTTCGGAAGTGATGGGTTTTAACACAAC GACTGGACAGTGGCCTGTAGCTTTCGACAGCCCGGGCCAGTCTCTGGCTG TGGATGAAGACAATAATGTATATATGACGGGCTCCACCAATAGCACGGTC TTGACATACAACCCAGGAATGGATCCGCCTTCTAGTAATACATTCTGGGA CGGAGGAATAAGCAGGACGAAAAGTGATGGGATGATACTAAAGATTCGCT GCAATACAGGCCTTCTCACCTGGGGAATGACGTTTGGCATGAGGGCAACC AACGACTTTGGATATGCCGTGGCAGTTGCCCCAAACAACGGCAGCAGTGA CGTCTTTGTTGCGGGGACTGTAGGGGGTTCTCCTGTTTATTTCGGGGACC CTGTGAGGAGTGTAAGTGGAATTCGTGCGGTCCAACCATTCGTAGCCCGC CTCTCCGCACAAGATGGAACTCCGATGTGGATAACTTCTTTGGGTGTAGC TGCAAGGACGAACCGAGTGCTGGGCTTAGCCGTGGATACGACGAGAAGCC TAATTCATGCCGCAGGTTTTGTGGCATCGGGGAACTTGCCATTCGGGCAA AGTTACGGGGGTTTAACCAACGACAGCTCTACTGGCGACGGCTTTTTATG GACACTTGGAACAACAGAGGGCCATATCGAAGGTGGCATGGTAATCGCAG GCATGGGACAGGACGTATTGCATAGTGTTGCCGTTTCACCAGATGTGATT CATTTGTGTGGTTTCTTCAATTCTCCACGTGTACGCCTTGGTAATGACTC AAGCCTCATTCTAACAAATGTTGATTCGACGGGCACAACTTCTGACATTT GGTGGGGATCTTTGCGGGCCCATGTTCCAATATTATGCCCTTCTCAGACA CCGACCGGTGTTCCTTCGAGCAGCCCGTCCGCTTCTCCTACGGCATCGCT CACCACTGAGGTGCACTCCGCGTCACCATCCTCGAGCCTATCGTCGTCTC CGTCAAGCAGTCCGTCGTTGTCTCCGTCGAGCAGCCCGTCAATGTCTCCC TCGAGCAGTCCGTCTGATTCCCCCTCGACGTCGCCAAACAGCAGTCCGAC GGAGATGCCCGCTGCATCTCCATCCGTAAGCTCTCCATCGTCTCTTCTGA GCAGCCCGTCAGTGTCTCCCTCGAGCAGTCCGTCTGGTTCTCCCTCGGCT GCCCCTTCTCTTGAAACAAACCCCGGAACGACTCCTTCTACAGTTGACTT TACCATTCTGGATGAGGCCAAAGAAAAGGAAAATGCCATGGCCAAACTCC GCAAGGAGGAACGCAATCGGCGCAAAGCTTTCATCATTGGATTTTCCATC CTCGGTATTATGATAATCGCTGGATTGTCGGTATTCTATCGACGCCAGCG AGCATCCCCGCCGGTTACGCCTGCATAGAAGGATACTCCAAATGCAGTGT CTTGGCGGCCTGATTTCCTCATTTTAATTCATTACTCATGCGTCCCAATG TATCGTTAATGATCTGGCGGTGGTGCTGCTTTGAATCTCTTTCCACAATT TCTTTAAATTCTTTAATAAATTTTATTCTCCTGAGTATTTGTGTAAAAGT ACGTAAGTGCAGAAAGGGGAGAAGAAAACAGTGCACGTCATGGAACGCCA TGATTCCGCACCAGCAAAGAAACACGGCACACAAT
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Coding sequence (CDS) from alignment at chr14:80344..83328+

>NO14G00230.1 ID=NO14G00230.1|Name=NO14G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=2253bp|location=Sequence derived from alignment at chr14:80344..83328+ (Nannochloropsis oceanica)
ATGCCTTTTATCATGCTGATTACTCGCGTTGGCTGCCTCCTGGCCTGCCT
CATCCTGTCCCTCATGCCAGCAGCGCACCCCCAAGTCACCGCCGATGGCT
TCCACACCATCGCGCATCCCCAAGTCAACGATAATGTCTATCAGCCTATC
CTTAGCGCAAATTCCCTTGGCGGTGAGAGCTGGGAGCGTGCCTATCGCTT
GGTGCCAGACCTCTCCGATCCCAGCGTCAAATACTTGGCTGGTGCTTTCC
AGAGCTCTACCCTTTCCTTCCCTGCTCCATCCATGGCCGCGTCCCTCAGC
GCAATTGATAATGCGGCTAGCAACACCACCCAAAATGCATTATTGTTGAA
AATTCGACACGAGGATAACGCTGTGATCTGGGCGCTCCCTATGGGAGCCA
GCTCTGGGGGTGCTTCCAGGCGTAATCAGGCATTAAGCGTCGCAGTGGGC
CTCACAGGATCTGCTGTCTTTGCAGTGGGCGATTTTTCCTCCACCTCCTT
TCAACTAGGGGCATTTTTATTCTCTAGTACCGGACCTTCGGATGCATGGA
TTGCCAAATTGGACGCAAGTGATGGCACTGTACTCTGGGCGCGCACTTTC
GAAGGCACAGGTTTGGAAGCAGCCAAAAGTGTTGTGGTAGATCCCCTGTC
AGGCGACGTGATCGTCGCCGGGGATTTTAATTCGTCAAGCGCGGCATTTA
ATCCGGATGTCAATGACATTGGTGCCCGGGTACTCAATAATAGCGAGGAC
CCTAAGTGGGGTTCGGGCACGGGCAGCGACATTTGGATCGCCAAGCTTGG
GGCAGCAGACGGACAAGTACACTGGATGGGCCACGTATCGGGCTTGCGTT
CGGAAGTGATGGGTTTTAACACAACGACTGGACAGTGGCCTGTAGCTTTC
GACAGCCCGGGCCAGTCTCTGGCTGTGGATGAAGACAATAATGTATATAT
GACGGGCTCCACCAATAGCACGGTCTTGACATACAACCCAGGAATGGATC
CGCCTTCTAGTAATACATTCTGGGACGGAGGAATAAGCAGGACGAAAAGT
GATGGGATGATACTAAAGATTCGCTGCAATACAGGCCTTCTCACCTGGGG
AATGACGTTTGGCATGAGGGCAACCAACGACTTTGGATATGCCGTGGCAG
TTGCCCCAAACAACGGCAGCAGTGACGTCTTTGTTGCGGGGACTGTAGGG
GGTTCTCCTGTTTATTTCGGGGACCCTGTGAGGAGTGTAAGTGGAATTCG
TGCGGTCCAACCATTCGTAGCCCGCCTCTCCGCACAAGATGGAACTCCGA
TGTGGATAACTTCTTTGGGTGTAGCTGCAAGGACGAACCGAGTGCTGGGC
TTAGCCGTGGATACGACGAGAAGCCTAATTCATGCCGCAGGTTTTGTGGC
ATCGGGGAACTTGCCATTCGGGCAAAGTTACGGGGGTTTAACCAACGACA
GCTCTACTGGCGACGGCTTTTTATGGACACTTGGAACAACAGAGGGCCAT
ATCGAAGGTGGCATGGTAATCGCAGGCATGGGACAGGACGTATTGCATAG
TGTTGCCGTTTCACCAGATGTGATTCATTTGTGTGGTTTCTTCAATTCTC
CACGTGTACGCCTTGGTAATGACTCAAGCCTCATTCTAACAAATGTTGAT
TCGACGGGCACAACTTCTGACATTTGGTGGGGATCTTTGCGGGCCCATGT
TCCAATATTATGCCCTTCTCAGACACCGACCGGTGTTCCTTCGAGCAGCC
CGTCCGCTTCTCCTACGGCATCGCTCACCACTGAGGTGCACTCCGCGTCA
CCATCCTCGAGCCTATCGTCGTCTCCGTCAAGCAGTCCGTCGTTGTCTCC
GTCGAGCAGCCCGTCAATGTCTCCCTCGAGCAGTCCGTCTGATTCCCCCT
CGACGTCGCCAAACAGCAGTCCGACGGAGATGCCCGCTGCATCTCCATCC
GTAAGCTCTCCATCGTCTCTTCTGAGCAGCCCGTCAGTGTCTCCCTCGAG
CAGTCCGTCTGGTTCTCCCTCGGCTGCCCCTTCTCTTGAAACAAACCCCG
GAACGACTCCTTCTACAGTTGACTTTACCATTCTGGATGAGGCCAAAGAA
AAGGAAAATGCCATGGCCAAACTCCGCAAGGAGGAACGCAATCGGCGCAA
AGCTTTCATCATTGGATTTTCCATCCTCGGTATTATGATAATCGCTGGAT
TGTCGGTATTCTATCGACGCCAGCGAGCATCCCCGCCGGTTACGCCTGCA
TAG
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Synonyms
Publications