NO14G00200.1, NO14G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00200.1
Unique NameNO14G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1132
Alignment locationchr14:73212..75044 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:73212..75044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00200.1 vs.
Match: EWM24778.1 (hypothetical protein Naga_100446g4 [Nannochloropsis gaditana])

HSP 1 Score: 233.8 bits (595), Expect = 5.400e-58
Identity = 114/167 (68.26%), Postives = 133/167 (79.64%), Query Frame = 0 
Query:    1 MECVDGVCKFVPKSQRGGGHKGVGENDENVAPALPLVAVGDKLPMPLPLEQLEEGGKATTLQSLCSERGDRGRVVVLDLWSNACVRCPEALDKLNALAERMKEDVEKGLVIFASVNIDDKAKARGLIAERKWTSLSHLFVDAATKEMLKARFGLASVPFVMVFDQEG 168
            MEC DGVCKFVP+SQRG     +G N+ENV PALPLV+VGDK PMPL  E LEEGG++ +LQ LC+   D GRVVVLDLWSNACVRCPEALDKLN ++   +EDV+K  V FA+VNIDDK KAR L+AER+W  L+H ++DA TK+ LKARFGL SVPFVMVFDQ G
Sbjct:    1 MECADGVCKFVPRSQRG---VQIGGNEENVEPALPLVSVGDKPPMPLIFETLEEGGRSFSLQRLCAAGEDGGRVVVLDLWSNACVRCPEALDKLNQMSSACQEDVKKHRVTFAAVNIDDKVKARALVAERQWDCLAHFYIDAGTKDTLKARFGLQSVPFVMVFDQVG 164
The following BLAST results are available for this feature:
BLAST of NO14G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24778.15.400e-5868.26hypothetical protein Naga_100446g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00200NO14G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00200.1NO14G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00200.1.cds1NO14G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00200.1.cds2NO14G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00200.1.cds3NO14G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00200.1.cds4NO14G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00200.1 ID=NO14G00200.1|Name=NO14G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1132bp
TAAAACTTGACAAATTGGAACTAGCTTTTATTTCGAAAAGCCAGCAGAGT
ATCTGTGGCGGCTTTTAAAAATTTGTGTAGGGGCAATGGGGACGACTCTG
GAGAGTCCTTCTCCATCTCTCAGCCACCGCACAATTATCGCTGCATATCG
TCACAGGCCGCTTAGTTTCAGCAGTGTCGCATGTTTCTGTCCATATTATG
CAACGAACGCCTGCCAATGCCGGGCGGGACGGTACCTCTCGAGGAAGCGA
GCGAAGAGGCAGCGAGAGCAAAAGCAACAGCAGCACCACCAGCAGCAGTA
GTAGCAGCAGCGTAAGGACCAGCACCAGCTCCAGGACCAGGACTCTCTCG
ACACCAGGGACGTCATGGAGTGCGTGGATGGAGTTTGCAAGTTCGTACCA
AAAAGCCAGCGTGGCGGTGGGCATAAGGGAGTGGGGGAGAACGATGAGAA
CGTTGCCCCCGCCTTGCCCCTAGTTGCGGTCGGGGACAAGCTTCCCATGC
CGCTACCCCTGGAGCAGCTTGAGGAGGGAGGGAAGGCAACGACGCTGCAG
AGCCTTTGTTCTGAGAGAGGGGATCGAGGCCGAGTAGTCGTGTTGGATCT
CTGGTCCAATGCCTGCGTCCGGTGCCCTGAGGCCCTGGATAAGCTGAACG
CCCTCGCCGAGAGAATGAAGGAAGACGTGGAGAAGGGGCTCGTTATCTTT
GCTTCTGTCAACATTGATGATAAAGCCAAGGCCCGGGGGCTGATCGCAGA
GAGGAAGTGGACCAGCCTCTCTCATCTCTTCGTCGATGCCGCCACCAAAG
AGATGCTCAAGGCACGCTTTGGCTTGGCGAGTGTACCTTTTGTGATGGTG
TTTGACCAGGAGGGCACGCTTAGCCAGATGGGCAACCCCAAGAAGATCGA
CTTTGATGCCCTCCCGGCCATGTGGAAGGCGAAGAGACAGGTAGGGAATG
AGGCGAAAAAAGAAGGGGGGATAGATCGGCAGAAGAAGGAGGATGTGGCG
AAAGAGGAGATGCCTGTCAAGGCCTTGCAGGCTTTTACGTTGGACGAGGA
CTTTTGAGTGGAAGGAAAAAGGAAGGAAAAGAACCGATGAAATAAAGCAA
AGGGTTCGCCACACTCAAGAAAATAAAGCACT
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protein sequence of NO14G00200.1

>NO14G00200.1-protein ID=NO14G00200.1-protein|Name=NO14G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MECVDGVCKFVPKSQRGGGHKGVGENDENVAPALPLVAVGDKLPMPLPLE
QLEEGGKATTLQSLCSERGDRGRVVVLDLWSNACVRCPEALDKLNALAER
MKEDVEKGLVIFASVNIDDKAKARGLIAERKWTSLSHLFVDAATKEMLKA
RFGLASVPFVMVFDQEGTLSQMGNPKKIDFDALPAMWKAKRQVGNEAKKE
GGIDRQKKEDVAKEEMPVKALQAFTLDEDF*
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mRNA from alignment at chr14:73212..75044+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00200.1 ID=NO14G00200.1|Name=NO14G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp|location=Sequence derived from alignment at chr14:73212..75044+ (Nannochloropsis oceanica)
TAAAACTTGACAAATTGGAACTAGCTTTTATTTCGAAAAGCCAGCAGAGT
ATCTGTGGCGGCTTTTAAAAATTTGTGTAGGGGCAATGGGGACGACTCTG
GAGAGTCCTTCTCCATCTCTCAGCCACCGCACAATTATCGCTGCATATCG
TCACAGGCCGCTTAGTTTCAGCAGTGTCGCATGTTTCTGTCCATATTATG
CAACGAACGCCTGCCAATGCCGGGCGGGACGGTACCTCTCGAGGTACCGT
GCTGGTGTGGTGTGTTTGAAGAGGGCGGGAAGAAGACGCGATCGCCGACG
ACGTTTTGGAGAAAGAATGCGATGAGACACCACCTCCTCACACATTTCCT
TCCCCCTACACACAGGAAGCGAGCGAAGAGGCAGCGAGAGCAAAAGCAAC
AGCAGCACCACCAGCAGCAGTAGTAGCAGCAGCGTAAGGACCAGCACCAG
CTCCAGGACCAGGACTCTCTCGACACCAGGGACGTCATGGAGTGCGTGGA
TGGAGTTTGCAAGTTCGTACCAAAAAGCCAGCGTGGCGGTGGGCATAAGG
GAGTGGGGGAGAACGATGAGAACGTTGCCCCCGCCTTGCCCCTAGTTGCG
GTCGGGGACAAGCTTCCCATGCCGCTACCCCTGGAGCAGCTTGAGGAGGG
AGGGAAGGCAACGACGCTGCAGAGCCTTTGTTCTGAGAGAGGGGATCGAG
GCCGAGTAGTCGTGTTGGGTAAGAGTGGAGACGGTGGGAACTGGAAGAGG
GATGCATGGCCAGAAGCGGCATTGCCTTGTCGACTGTGTGCACCAATCTG
CTCATCTCGACTTGCTCGCTCTTTGAGCATTAGTCTGTGCTCTTTGGACG
TCCAACCTATCATTTTATTCCCTTTCCTCCTTAACCCTCCTCCCTCTTCC
TCCTTCCCTCCCACCCCACCCATCAGATCTCTGGTCCAATGCCTGCGTCC
GGTGCCCTGAGGCCCTGGATAAGCTGAACGCCCTCGCCGAGAGAATGAAG
GAAGACGTGGAGAAGGGGCTCGTTATCTTTGCTTCTGTCAACATTGATGA
TAAAGCCAAGGCCCGGGGGCTGATCGCAGAGAGGTGAGGGACGGCAGATA
AAGTGAGGGAAGGATATGTGGTAGTGTAGCTCGCCATAGGAGGACGATCA
AGCGAGATATCGCGGCAGACACACCCATTCCGCCCCTCCCTTTTTGTTAA
CTTCCTTCCTCCCCATTCCCCCCACCCCCCTTTCCTTCCCTCCATCCTTC
TCGTCCACAGGAAGTGGACCAGCCTCTCTCATCTCTTCGTCGATGCCGCC
ACCAAAGAGATGCTCAAGGCACGCTTTGGCTTGGCGAGTGTACCTTTTGT
GATGGTGTTTGACCAGGTAAGGCGACGGATTGGGAAGAGAGGGAGAGAGG
GAGGGAGGAATGGAAACGAGAGGAGGTGAAAAGCAGGGGCAAACCATTGG
TGAGGGACATGATCCGAAAACTGAAAATGCCTCCACACCATTCCTCCCCC
CCCACTCCACCCCCTCTCCTCGCCATTCCTCATTTCTCCGTCTCTCCCGC
TGTCGCTCAGGAGGGCACGCTTAGCCAGATGGGCAACCCCAAGAAGATCG
ACTTTGATGCCCTCCCGGCCATGTGGAAGGCGAAGAGACAGGTAGGGAAT
GAGGCGAAAAAAGAAGGGGGGATAGATCGGCAGAAGAAGGAGGATGTGGC
GAAAGAGGAGATGCCTGTCAAGGCCTTGCAGGCTTTTACGTTGGACGAGG
ACTTTTGAGTGGAAGGAAAAAGGAAGGAAAAGAACCGATGAAATAAAGCA
AAGGGTTCGCCACACTCAAGAAAATAAAGCACT
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Coding sequence (CDS) from alignment at chr14:73212..75044+

>NO14G00200.1 ID=NO14G00200.1|Name=NO14G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr14:73212..75044+ (Nannochloropsis oceanica)
ATGGAGTGCGTGGATGGAGTTTGCAAGTTCGTACCAAAAAGCCAGCGTGG
CGGTGGGCATAAGGGAGTGGGGGAGAACGATGAGAACGTTGCCCCCGCCT
TGCCCCTAGTTGCGGTCGGGGACAAGCTTCCCATGCCGCTACCCCTGGAG
CAGCTTGAGGAGGGAGGGAAGGCAACGACGCTGCAGAGCCTTTGTTCTGA
GAGAGGGGATCGAGGCCGAGTAGTCGTGTTGGATCTCTGGTCCAATGCCT
GCGTCCGGTGCCCTGAGGCCCTGGATAAGCTGAACGCCCTCGCCGAGAGA
ATGAAGGAAGACGTGGAGAAGGGGCTCGTTATCTTTGCTTCTGTCAACAT
TGATGATAAAGCCAAGGCCCGGGGGCTGATCGCAGAGAGGAAGTGGACCA
GCCTCTCTCATCTCTTCGTCGATGCCGCCACCAAAGAGATGCTCAAGGCA
CGCTTTGGCTTGGCGAGTGTACCTTTTGTGATGGTGTTTGACCAGGAGGG
CACGCTTAGCCAGATGGGCAACCCCAAGAAGATCGACTTTGATGCCCTCC
CGGCCATGTGGAAGGCGAAGAGACAGGTAGGGAATGAGGCGAAAAAAGAA
GGGGGGATAGATCGGCAGAAGAAGGAGGATGTGGCGAAAGAGGAGATGCC
TGTCAAGGCCTTGCAGGCTTTTACGTTGGACGAGGACTTTTGA
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Synonyms
Publications