NO14G00120.1, NO14G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00120.1
Unique NameNO14G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1400
Alignment locationchr14:35414..37358 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:35414..37358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00120.1 vs.
Match: EWM24787.1 (hypothetical protein Naga_100725g2 [Nannochloropsis gaditana])

HSP 1 Score: 120.9 bits (302), Expect = 3.700e-24
Identity = 86/189 (45.50%), Postives = 106/189 (56.08%), Query Frame = 0 
Query:    1 MAVPPS--SEVDPLRLIITGLRTMLLVLSLWELAVSNVL-------------------PRLSVTPLSEETRLPTDPSPSLSNMAFDYHDTELRAASSALVGRGLLTTVVLLALSLLLLFLRVSWDSSTPFGGPWQRLFHLHLQEHDQHDRRRASTLLLPALPPPLLWFFRGGGR----RDGGGGKMPMW 165
            MA+ P+  S  D LRLIITGLRT+LL+LSLWELA+SN                     P  + TPLS  +     P  S++   F Y   +L AASS LVGRGLL T + LA++L+LL  RVSWD+ TP GGPW+ LF   L   ++      S  LLPALPP LLW  R  GR    R+GGG  +  W
Sbjct:  101 MALRPAGASSADMLRLIITGLRTLLLLLSLWELALSNFFLLSPHIVSGPTIQAWSFTSPASTSTPLSPSST-SASPQESIACSLFYY---KLCAASSVLVGRGLLATSLGLAIALVLLLFRVSWDACTPIGGPWKDLFVPRLGA-EEGPEDSPSPFLLPALPPALLWIHRVRGRGDQGREGGGRYLRAW 284
The following BLAST results are available for this feature:
BLAST of NO14G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24787.13.700e-2445.50hypothetical protein Naga_100725g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00120NO14G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00120.1NO14G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00120.1.cds1NO14G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00120.1.cds2NO14G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00120.1.cds3NO14G00120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G00120.1.cds4NO14G00120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00120.1 ID=NO14G00120.1|Name=NO14G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
CTTTTCTATATCGCTCGCTCTCAGTTGTTCTCCACCCCAAATATGTTTTG
GGTCATAACATGACAATTGATAATTTGATACACTTGAGGAGAAACCACGG
TCCACGTGGATCTCACGATAAGAACAAAGTCAACACTTTGCAACTACTTT
CGTCCCCTGGTATTGGCAACGTGCCTCGCCCTTGGGGCTCAGGGCTCGGC
CCACCAAAGTGAAGAGCACAGGAAAGCAAGAACAAGGACGAAGCTTGAGT
TCCAGTTTGGAATGCGTTGTTGCGACACCAAAAAGTCACGCTAGACCCCC
AACATCTCACTTTTTCTTGTCGACCTCCCCACCCTCCTCACCCTCTCCCC
CGAAGAACCCTTCACAACGCAGGAGGGCGATACGACCTCCTACCTAGTCG
TTCGGGCTGGGCGAGGGGATCAGGCTAGAGTGCACGCACGGTACAAGGGT
AAGAAGCAAGGAATCAAGACAGCAAGATGGCCGTCCCTCCATCCTCGGAG
GTCGACCCTCTCCGTCTCATCATCACCGGCCTAAGGACCATGCTGCTCGT
TCTCTCGCTGTGGGAGCTAGCCGTGTCCAACGTCCTCCCAAGGCTGTCAG
TTACACCGTTGTCGGAGGAAACGAGATTACCCACTGATCCTTCCCCCTCG
CTCTCGAACATGGCCTTCGACTATCACGACACGGAATTGCGCGCCGCCTC
CTCCGCTCTCGTCGGACGGGGCCTCCTGACCACAGTCGTGCTGCTGGCCC
TATCCTTGCTCCTGCTTTTCCTCCGCGTCTCGTGGGACTCTTCCACGCCC
TTCGGCGGACCTTGGCAGAGGCTCTTCCACCTCCACTTGCAAGAGCATGA
TCAGCACGACCGCCGCCGCGCATCCACCCTCCTCCTTCCTGCCCTCCCTC
CACCTCTGCTGTGGTTCTTCCGGGGGGGGGGACGGAGGGACGGAGGGGGG
GGAAAGATGCCGATGTGGGCGACGGCGCTCTGATCAGAGGCCGAATTCTG
ATCCTTTGTCTGTTAGCCGCTCGGGGTAGCGATAGGCAGTCATCCCCTCG
CGATTGCGAACCCGGTGTAATGGAGTTGAATGGGATGTCGAGTAAGGTGG
GAAGGCAGGCGCTTGGTGTCCGCCGGGGTATCTCGTGAGCGAGTGACAGA
TTGAGAGATGGATTGGTCCTGGTGTGTGTCCGGTGCAGTGAAGCCTCGAA
ATGGGACGGTTAAGGCAGCGTGGAGGCCCAGGCGATGCATGCGTGCCCCA
CACGAGAGACGAGGATTACCGGCAGTGGGAGGTACAGGTTTGTTGTGACA
GGGGATGAGGAAGGGACGGGGCGATGCCTCTTACGGTGGCCGGCTTCCAC
CCTTCATTCGCGGGGATGGATGACTTGCTTGGCAGGGAGGGAGGGGGGGA
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protein sequence of NO14G00120.1

>NO14G00120.1-protein ID=NO14G00120.1-protein|Name=NO14G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MAVPPSSEVDPLRLIITGLRTMLLVLSLWELAVSNVLPRLSVTPLSEETR
LPTDPSPSLSNMAFDYHDTELRAASSALVGRGLLTTVVLLALSLLLLFLR
VSWDSSTPFGGPWQRLFHLHLQEHDQHDRRRASTLLLPALPPPLLWFFRG
GGRRDGGGGKMPMWATAL*
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mRNA from alignment at chr14:35414..37358+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00120.1 ID=NO14G00120.1|Name=NO14G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at chr14:35414..37358+ (Nannochloropsis oceanica)
CTTTTCTATATCGCTCGCTCTCAGTTGTTCTCCACCCCAAATATGTTTTG
GGTCATAACATGACAATTGATAATTTGATACACTTGAGGAGAAACCACGG
TCCACGTGGATCTCACGATAAGAACAAAGTCAACACTTTGCAACTACTTT
CGTCCCCTGGTATTGGCAACGTGCCTCGCCCTTGGGGCTCAGGGCTCGGC
CCACCAAAGTGAAGAGCACAGGAAAGCAAGAACAAGGACGAAGCTTGAGT
TCCAGTTTGGAATGCGTTGTTGCGACACCAAAAAGTCACGCTAGACCCCC
AACATCTCACTTTTTCTTGTCGACCTCCCCACCCTCCTCACCCTCTCCCC
CGAAGAACCCTTCACAACGCAGGAGGGCGATACGACCTCCTACCTAGTCG
TTCGGGCTGGGCGAGGGGATCAGGCTAGAGTGCACGCACGGTACAAGGGT
AAGAAGCAAGGAATCAAGACAGCAAGATGGCCGTCCCTCCATCCTCGGAG
GTCGACCCTCTCCGTCTCATCATCACCGGCCTAAGGACCATGCTGCTCGT
TCTCTCGCTGTGGGAGCTAGCCGTGTCCAACGTCCTCCCAAGGCTGTCAG
TTACACCGTTGTCGGAGGAAACGGTGAGTCGACTGGACGAAGGGGAGGGT
GGGGAGTGAGGCAAAGGCCAGGGACGATGATGGCGGATGCCGCGTAATGC
ATTGCCTTCGTCATCCCCTCGATTTCGCACCGGCTCCTTCAGTGAGAGCC
ACGAAAGAACCTTTTCTCTCCTTCAGCCTCCTCCTCTGACATCTTCATAT
CCTCGCCCCATTCATCCATCCCTTACTCCTTCCAGAGATTACCCACTGAT
CCTTCCCCCTCGCTCTCGAACATGGCCTTCGACTATCACGACACGGAATT
GCGCGCCGCCTCCTCCGCTCTCGTCGGACGGGTACGTGTTTACTGCGTCC
CCTTCCCTCCTTACCTCCCTCCCTCCCATCCTGCCTCTTATTCTGCAATT
GCTCCTATTCGCACCTGCTGCTGCTCACCGTCACTCCATCTCATGTCCTC
ATACACCGTTTTCGCCTTTCCATTGCATAACTGTCCATCTTCACTCCCAA
ACCTCCCTCCTTCCCTCCCTCCCTTCCTCCTTCCCTTCTTTCAGGGCCTC
CTGACCACAGTCGTGCTGCTGGCCCTATCCTTGCTCCTGCTTTTCCTCCG
CGTCTCGTGGGACTCTTCCACGCCCTTCGGCGGACCTTGGCAGGTGAGGG
AGGACAAGAGGGAGGGAAGGAGGGAAGGAGGAAGGGAAGGAGAGAGCGAA
GGAGGGCAGGAGGAATGGGGACTCACAGGTCATGCTCCGAACTCTCTTCC
CATCCCCCGGCAGAGGCTCTTCCACCTCCACTTGCAAGAGCATGATCAGC
ACGACCGCCGCCGCGCATCCACCCTCCTCCTTCCTGCCCTCCCTCCACCT
CTGCTGTGGTTCTTCCGGGGGGGGGGACGGAGGGACGGAGGGGGGGGAAA
GATGCCGATGTGGGCGACGGCGCTCTGATCAGAGGCCGAATTCTGATCCT
TTGTCTGTTAGCCGCTCGGGGTAGCGATAGGCAGTCATCCCCTCGCGATT
GCGAACCCGGTGTAATGGAGTTGAATGGGATGTCGAGTAAGGTGGGAAGG
CAGGCGCTTGGTGTCCGCCGGGGTATCTCGTGAGCGAGTGACAGATTGAG
AGATGGATTGGTCCTGGTGTGTGTCCGGTGCAGTGAAGCCTCGAAATGGG
ACGGTTAAGGCAGCGTGGAGGCCCAGGCGATGCATGCGTGCCCCACACGA
GAGACGAGGATTACCGGCAGTGGGAGGTACAGGTTTGTTGTGACAGGGGA
TGAGGAAGGGACGGGGCGATGCCTCTTACGGTGGCCGGCTTCCACCCTTC
ATTCGCGGGGATGGATGACTTGCTTGGCAGGGAGGGAGGGGGGGA
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Coding sequence (CDS) from alignment at chr14:35414..37358+

>NO14G00120.1 ID=NO14G00120.1|Name=NO14G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at chr14:35414..37358+ (Nannochloropsis oceanica)
ATGGCCGTCCCTCCATCCTCGGAGGTCGACCCTCTCCGTCTCATCATCAC
CGGCCTAAGGACCATGCTGCTCGTTCTCTCGCTGTGGGAGCTAGCCGTGT
CCAACGTCCTCCCAAGGCTGTCAGTTACACCGTTGTCGGAGGAAACGAGA
TTACCCACTGATCCTTCCCCCTCGCTCTCGAACATGGCCTTCGACTATCA
CGACACGGAATTGCGCGCCGCCTCCTCCGCTCTCGTCGGACGGGGCCTCC
TGACCACAGTCGTGCTGCTGGCCCTATCCTTGCTCCTGCTTTTCCTCCGC
GTCTCGTGGGACTCTTCCACGCCCTTCGGCGGACCTTGGCAGAGGCTCTT
CCACCTCCACTTGCAAGAGCATGATCAGCACGACCGCCGCCGCGCATCCA
CCCTCCTCCTTCCTGCCCTCCCTCCACCTCTGCTGTGGTTCTTCCGGGGG
GGGGGACGGAGGGACGGAGGGGGGGGAAAGATGCCGATGTGGGCGACGGC
GCTCTGA
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Synonyms
Publications