NO13G03450.5, NO13G03450.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03450.5
Unique NameNO13G03450.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3667
Alignment locationchr13:1031713..1035563 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:1031713..1035563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03450.5 vs.
Match: EWM20648.1 (beta- -mannosyl-glycoprotein beta- -n-acetylglucosaminyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 475.3 bits (1222), Expect = 1.500e-130
Identity = 212/299 (70.90%), Postives = 250/299 (83.61%), Query Frame = 0 
Query:   19 QLGFDADMLELLLRELNDVVDKFFIIESTRTHNKGIRKILLWDHVKNQPRFEFVKEKVVHMVLDDTEAFLDSNEEFAIEKSQERTRWESFLRWNNHTQFFGPNDLVGFGDVDEIPSRENVQLLRHCELAGPSVDIGSWFAPTRLSEAFRPDWPVPGNRWTLGDPTYWTVASATMFGQDGAQYPSRMRGTSGKFLLGGIHMTDNGYAPFRMAKLIACTECKDSAARLMTDMATIFRDNQTKEETLARLDTYLNPVWPDRKRFVGGEEMIIRLGAAYYIPWFLQCNPERFSSWYGNLDSRL 318
            Q+GFDADMLE+LL EL+DVVDKFF+IESTRTHNK  RKIL+WD +K QPRF+FVK+KVVH+VLDD+E  ++    FA E  QE+ RW+SFL WN H+++FGP DLVGFGD DEIP+R NVQLLRHC +AG SVDIGSWFAPTRL EAFRPDWPVPG+ WTLGDPTYWTVASAT +G  G QYPSRMRG SGKFLLGGIHMTDNGY P RMAKL+ACTEC D A RL+ DMA+ F+D    +E L++LD YLNPVWPDRKRFV G+ +   +GAAY+IPWFL+CNP+R++SWY  +DSR+
Sbjct:  173 QMGFDADMLEVLLHELDDVVDKFFVIESTRTHNKDTRKILMWDRLKYQPRFDFVKDKVVHLVLDDSETLVNPEVPFARESLQEKARWDSFLSWNKHSKYFGPEDLVGFGDTDEIPARSNVQLLRHCTMAGASVDIGSWFAPTRLDEAFRPDWPVPGHPWTLGDPTYWTVASATEYGNAGNQYPSRMRGMSGKFLLGGIHMTDNGYFPMRMAKLVACTECSDRAVRLIQDMASYFQDGNAGKEVLSQLDLYLNPVWPDRKRFVEGDMIKPTVGAAYHIPWFLKCNPDRYASWYRKIDSRV 471
The following BLAST results are available for this feature:
BLAST of NO13G03450.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20648.11.500e-13070.90beta- -mannosyl-glycoprotein beta- -n-acetylglucos... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03450NO13G03450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03450.5NO13G03450.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03450.5.cds1NO13G03450.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03450.5.cds2NO13G03450.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03450.5 ID=NO13G03450.5|Name=NO13G03450.5|organism=Nannochloropsis oceanica|type=mRNA|length=3667bp
TGTTAATAAATGCCCCTACCCTTGCACTCTGCCGGGAGTAACTACTCCTA
GCCATTCAATCGTTTTATTGACATCTCGGATGCCTTTCTTGTTGTGGTAG
ATTGCTGGCCAGTTCAGGATAGCACAAATTTTATAAAGTTTTTATCAAAC
TTATCTAGAACTCAGACCCAATAAAGGCTAGTTCAGAAGTGAGCTCGAAT
TTTGCGTGTTAATAAATGCCCCTACCCTTGCACTCTGCCGGGAGTAACTA
CTCCTAGCCATTCAATCGTTTTATTGACATCTCGGATGCCTTTCTTGTTG
TGGTAGATTGCTGGCCAGTTCAGGATAGCACAAATTTTATAAAGTTTTTA
TCAAACTTATCTAGAACTCAGACCCAATAAAGGCTAGTTCAGAAGTGAGC
TCGAATTTTGCGATTCTAAACAGTGTTTGATACGAGCAGGCTCAGTCTCA
CTCTCTATACACGCACCGCTCCTTCCTGTGACAGATGGATGCATTCCTCT
CTCACTACCAAGCCAACAGATGAGGGTTTAAAAGAACTTAACCTAAGATT
TTACCACTGCTACTGAAGGAATTGCTGGGAATAATCCATTTCAAATGCCA
CATAACATGTTTGACACAGTGTCATTGGATGAAAACAGCGAGTAGCATTG
ATTTTTTAATTCTCAAAAAACTTCATGTTCGAGCCATACCAAGATAATCT
ATAGATGAACATTTAGACCCGCTTTGCTATAAAAATAATCTGAGTCTCAA
GTGACTCATATCTTATGTAAAATTATATCACAGGCCCAGAAGATGGTCGA
GATATCAAGAAACATTTCCCTTCTCTCTGGAGGGATCCTTCTTTCCTTGT
TGGTAGCTCGCTTCATTATTCTTGAGGATGCAAATTTGCGACCAACAAGC
TTTGCAGCAAGCAAACAAGGTATTTACTTTGTGAAGGGCCCAATGAGAAA
GAACATTGTCTAATGTATTTAATATATTGCTTTCCCAGAGTTGCCCCTAC
AGTTCTACATCGATCAGGAAAAAGATGAATCCATTGGAGTGGAACTCTCG
AACGATAAGCCGGCGGCTATTGATCAAAATTCATTTCTCGAAAGTATGGG
TAAGAGTTGTAGCTTGTAAGAAGCTAATGATCTGATGCAGCTCCAGCCGA
TAATTGGACTTCACACAAATTCTCACACAAGTTTTGCACGAACGCGCATG
TACTGAAGCCATGTTTCCTTGGACAGATGCACTGGCAACCTTATCAAATA
AGAATGCGACGCTTTCCTCAATTCAGTCGTTACTTGACACGTTGATAACG
AGTCTAATTCAGGAACCAATAAACCCCCCCGTCGAGGCATGTGAGATACC
CCTTCTGATGCAGGCAAAAAATATTGATTGCTCTAAATACCCGACCGCCT
TCACCAAGACCATGTCACGACAGACACCTGTCAAAGTGGCCCACCTCGTA
CAGGTAAAAGACCACCAGTTTTTGTCCGTGTATACCGAAGTTATGTTTAC
TACACTGTAAATGTCAGAGACTTCTGGGTTTTACTTCCCTACAACTGCTC
TATTTATGCACTCACAGCTCGGTTTCGATGCGGACATGCTAGAGCTGTTG
CTGAGAGAGCTAAACGACGTTGTGGACAAATTTTTCATCATCGAATCCAC
GCGAACACATAACAAGGGAATCCGAAAGATTCTTCTGTGGGATCATGTCA
AGAACCAACCAAGATTTGAGTTTGTCAAGGAGAAGGTGGTACATATGGTG
TTAGATGACACGGAGGCCTTCTTAGACTCCAATGAAGAATTTGCCATTGA
GAAGTCACAGGAGAGGACACGTTGGGAATCATTTTTGCGCTGGAACAACC
ATACACAATTCTTTGGACCAAATGACCTGGTAGGGTTTGGAGATGTCGAC
GAGATCCCGTCCCGAGAAAATGTGCAGCTGCTTCGCCACTGCGAATTGGC
CGGCCCGTCGGTTGACATTGGTTCATGGTTTGCACCCACAAGGCTAAGCG
AAGCGTTTCGACCCGATTGGCCAGTACCGGGCAACCGTTGGACGCTGGGC
GATCCAACTTATTGGACAGTGGCCTCTGCAACCATGTTCGGACAAGATGG
TGCACAATATCCAAGCCGCATGAGGGGTACATCGGGAAAATTTTTGCTAG
GAGGCATTCATATGACAGACAATGGGTATGCGCCATTTCGCATGGCAAAA
CTTATCGCCTGCACGGAATGCAAGGACAGTGCAGCCAGACTTATGACAGA
TATGGCGACCATTTTCAGAGACAACCAAACCAAAGAGGAAACGTTAGCGA
GACTAGACACGTATTTGAACCCTGTGTGGCCTGACCGCAAACGATTTGTT
GGCGGAGAGGAAATGATAATAAGGCTCGGAGCGGCCTACTACATACCATG
GTTCTTGCAATGCAACCCAGAGAGGTTTTCCTCTTGGTACGGTAATCTCG
ACAGCCGTCTTCATGGGAGTTGAATTTATCGTGGAGAGCAAAAAACGAAT
AAATTTATGCACATCATTCTGACTACAGAAAAATCAGCACCAAAAGTACA
TCTCTCCCAAAATTACATCGCTTTAAGACTGGCCCCTGAAGATATACTCG
ATATTACCGGTTTTCTCTATCATGTTACCTCACAGTTATTGGCCATCCAG
AATTCTAAAACATTGTTTTACAGCCTCCCACAGTCGATTCTTTCGTAGAT
CCCCCTCTGGTGGTTACCGTCGAGCGCCCAGTCGGGCTGTGCTTCAGAGG
TTACAGGACTTAATATATATATATGTTTCTCCGCGGGTATCGCACCCATT
CTCGAAATTTATGGTGTACAATTTTCGAGAATCTGACTGGACATCTGACT
CTTGGCTTGATTGTGTGTGAGAAGAGATCATCCGGAAGCTGCTACTTATC
ATCATCGTCGGATTACATGGTCGAGGTTCGGCCTCTGAGCGGCCATTATG
TGACACTAAGTCTAAGCTATTTAGAAGAGTCACTTGTCTGTCTTCGATTG
AATTTCTGCTGACAGGGCTTCGCATTTTTCGGTACTGAGCGTGGAACTAC
AAGCGTCAGTTGTCTGGTGCGGGGTCACGTACTCATGGGGCGTCTCAGGA
TAGCATTGGTTTGTACACAATCCACATCATCAAATGCTGTATGACTTTGA
TGCAACGCTGCATTTTTCTGATTCTCCCGCAGATCTTTCTGCCAAGATTC
TCTTGTGCAAAGCATATTCGGAGGACAAGCCCAAGAACTGTACATGTCGC
GAGGAGGAGCGAGGGGAATTTCCTTGTTTATTATGCGCAAGAGCACAAGC
AAGAGGAAGAGTGGCTCTTCAAGTCAGCTCTTATCTGCTATCGGGAGGGA
GAAGATATGCCTAAGATGTGGAAGAAGTGCAGTGATTGCAATGATATTCC
ATGCCGTGATAAGCTTGCCAATGAGTCAGGCAGGGTAGAGAACGTCCTTT
TGAGGATTGAAAGGAGGGATAAGGATGATCAGGGCCAGGAAAGATATAGA
TTGACGGAGAAGAAGAAGGCTGCATAGGCACCGTTCATAGATGTAGAAAG
ATTTGTTGAGGGTGAAAGACGCAATGATAAATACTTTTTGGCGTCATTTT
GGTAATTTTTGCTTTCAGCTTCAGGGGGGTGAGGAGGTTAGAAAACCCAT
CAAAAACTAAAAACGTG
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protein sequence of NO13G03450.5

>NO13G03450.5-protein ID=NO13G03450.5-protein|Name=NO13G03450.5|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MSETSGFYFPTTALFMHSQLGFDADMLELLLRELNDVVDKFFIIESTRTH
NKGIRKILLWDHVKNQPRFEFVKEKVVHMVLDDTEAFLDSNEEFAIEKSQ
ERTRWESFLRWNNHTQFFGPNDLVGFGDVDEIPSRENVQLLRHCELAGPS
VDIGSWFAPTRLSEAFRPDWPVPGNRWTLGDPTYWTVASATMFGQDGAQY
PSRMRGTSGKFLLGGIHMTDNGYAPFRMAKLIACTECKDSAARLMTDMAT
IFRDNQTKEETLARLDTYLNPVWPDRKRFVGGEEMIIRLGAAYYIPWFLQ
CNPERFSSWYGNLDSRLHGS*
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mRNA from alignment at chr13:1031713..1035563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03450.5 ID=NO13G03450.5|Name=NO13G03450.5|organism=Nannochloropsis oceanica|type=mRNA|length=3851bp|location=Sequence derived from alignment at chr13:1031713..1035563- (Nannochloropsis oceanica)
TGTTAATAAATGCCCCTACCCTTGCACTCTGCCGGGAGTAACTACTCCTA
GCCATTCAATCGTTTTATTGACATCTCGGATGCCTTTCTTGTTGTGGTAG
ATTGCTGGCCAGTTCAGGATAGCACAAATTTTATAAAGTTTTTATCAAAC
TTATCTAGAACTCAGACCCAATAAAGGCTAGTTCAGAAGTGAGCTCGAAT
TTTGCGTGTTAATAAATGCCCCTACCCTTGCACTCTGCCGGGAGTAACTA
CTCCTAGCCATTCAATCGTTTTATTGACATCTCGGATGCCTTTCTTGTTG
TGGTAGATTGCTGGCCAGTTCAGGATAGCACAAATTTTATAAAGTTTTTA
TCAAACTTATCTAGAACTCAGACCCAATAAAGGCTAGTTCAGAAGTGAGC
TCGAATTTTGCGATTCTAAACAGTGTTTGATACGAGCAGGCTCAGTCTCA
CTCTCTATACACGCACCGCTCCTTCCTGTGACAGATGGATGCATTCCTCT
CTCACTACCAAGCCAACAGATGAGGGTTTAAAAGAACTTAACCTAAGATT
TTACCACTGCTACTGAAGGAATTGCTGGGAATAATCCATTTCAAATGCCA
CATAACATGTTTGACACAGTGTCATTGGATGAAAACAGCGAGTAGCATTG
ATTTTTTAATTCTCAAAAAACTTCATGTTCGAGCCATACCAAGATAATCT
ATAGATGAACATTTAGACCCGCTTTGCTATAAAAATAATCTGAGTCTCAA
GTGACTCATATCTTATGTAAAATTATATCACAGGCCCAGAAGATGGTCGA
GATATCAAGAAACATTTCCCTTCTCTCTGGAGGGATCCTTCTTTCCTTGT
TGGTAGCTCGCTTCATTATTCTTGAGGATGCAAATTTGCGACCAACAAGC
TTTGCAGCAAGCAAACAAGGTATTTACTTTGTGAAGGGCCCAATGAGAAA
GAACATTGTCTAATGTATTTAATATATTGCTTTCCCAGAGTTGCCCCTAC
AGTTCTACATCGATCAGGAAAAAGATGAATCCATTGGAGTGGAACTCTCG
AACGATAAGCCGGCGGCTATTGATCAAAATTCATTTCTCGAAAGTATGGG
TAAGAGTTGTAGCTTGTAAGAAGCTAATGATCTGATGCAGCTCCAGCCGA
TAATTGGACTTCACACAAATTCTCACACAAGTTTTGCACGAACGCGCATG
TACTGAAGCCATGTTTCCTTGGACAGATGCACTGGCAACCTTATCAAATA
AGAATGCGACGCTTTCCTCAATTCAGTCGTTACTTGACACGTTGATAACG
AGTCTAATTCAGGAACCAATAAACCCCCCCGTCGAGGCATGTGAGATACC
CCTTCTGATGCAGGCAAAAAATATTGATTGCTCTAAATACCCGACCGCCT
TCACCAAGACCATGTCACGACAGGTATGTGTATTTGAGATATCCTGTCTG
GCTGTTTGTCGGAAAGTGGCTCACTAATACCCCCTTCGCATAAACTCCTC
CACAGACACCTGTCAAAGTGGCCCACCTCGTACAGGTAAAAGACCACCAG
TTTTTGTCCGTGTATACCGAAGTTATGTTTACTACACTGTAAATGTCAGA
GACTTCTGGGTTTTACTTCCCTACAACTGCTCTATTTATGCACTCACAGC
TCGGTTTCGATGCGGACATGCTAGAGCTGTTGCTGAGAGAGCTAAACGAC
GTTGTGGACAAATTTTTCATCATCGAATCCACGCGAACACATAACAAGGT
GTGTATACTTCTTGACCCACACATTGCATTATCTCCTACGTATCAGTACA
AATATTTATAGATACCACCCCTGTTCTGCATTTTTTACATCTAATTTAAG
GGAATCCGAAAGATTCTTCTGTGGGATCATGTCAAGAACCAACCAAGATT
TGAGTTTGTCAAGGAGAAGGTGGTACATATGGTGTTAGATGACACGGAGG
CCTTCTTAGACTCCAATGAAGAATTTGCCATTGAGAAGTCACAGGAGAGG
ACACGTTGGGAATCATTTTTGCGCTGGAACAACCATACACAATTCTTTGG
ACCAAATGACCTGGTAGGGTTTGGAGATGTCGACGAGATCCCGTCCCGAG
AAAATGTGCAGCTGCTTCGCCACTGCGAATTGGCCGGCCCGTCGGTTGAC
ATTGGTTCATGGTTTGCACCCACAAGGCTAAGCGAAGCGTTTCGACCCGA
TTGGCCAGTACCGGGCAACCGTTGGACGCTGGGCGATCCAACTTATTGGA
CAGTGGCCTCTGCAACCATGTTCGGACAAGATGGTGCACAATATCCAAGC
CGCATGAGGGGTACATCGGGAAAATTTTTGCTAGGAGGCATTCATATGAC
AGACAATGGGTATGCGCCATTTCGCATGGCAAAACTTATCGCCTGCACGG
AATGCAAGGACAGTGCAGCCAGACTTATGACAGATATGGCGACCATTTTC
AGAGACAACCAAACCAAAGAGGAAACGTTAGCGAGACTAGACACGTATTT
GAACCCTGTGTGGCCTGACCGCAAACGATTTGTTGGCGGAGAGGAAATGA
TAATAAGGCTCGGAGCGGCCTACTACATACCATGGTTCTTGCAATGCAAC
CCAGAGAGGTTTTCCTCTTGGTACGGTAATCTCGACAGCCGTCTTCATGG
GAGTTGAATTTATCGTGGAGAGCAAAAAACGAATAAATTTATGCACATCA
TTCTGACTACAGAAAAATCAGCACCAAAAGTACATCTCTCCCAAAATTAC
ATCGCTTTAAGACTGGCCCCTGAAGATATACTCGATATTACCGGTTTTCT
CTATCATGTTACCTCACAGTTATTGGCCATCCAGAATTCTAAAACATTGT
TTTACAGCCTCCCACAGTCGATTCTTTCGTAGATCCCCCTCTGGTGGTTA
CCGTCGAGCGCCCAGTCGGGCTGTGCTTCAGAGGTTACAGGACTTAATAT
ATATATATGTTTCTCCGCGGGTATCGCACCCATTCTCGAAATTTATGGTG
TACAATTTTCGAGAATCTGACTGGACATCTGACTCTTGGCTTGATTGTGT
GTGAGAAGAGATCATCCGGAAGCTGCTACTTATCATCATCGTCGGATTAC
ATGGTCGAGGTTCGGCCTCTGAGCGGCCATTATGTGACACTAAGTCTAAG
CTATTTAGAAGAGTCACTTGTCTGTCTTCGATTGAATTTCTGCTGACAGG
GCTTCGCATTTTTCGGTACTGAGCGTGGAACTACAAGCGTCAGTTGTCTG
GTGCGGGGTCACGTACTCATGGGGCGTCTCAGGATAGCATTGGTTTGTAC
ACAATCCACATCATCAAATGCTGTATGACTTTGATGCAACGCTGCATTTT
TCTGATTCTCCCGCAGATCTTTCTGCCAAGATTCTCTTGTGCAAAGCATA
TTCGGAGGACAAGCCCAAGAACTGTACATGTCGCGAGGAGGAGCGAGGGG
AATTTCCTTGTTTATTATGCGCAAGAGCACAAGCAAGAGGAAGAGTGGCT
CTTCAAGTCAGCTCTTATCTGCTATCGGGAGGGAGAAGATATGCCTAAGA
TGTGGAAGAAGTGCAGTGATTGCAATGATATTCCATGCCGTGATAAGCTT
GCCAATGAGTCAGGCAGGGTAGAGAACGTCCTTTTGAGGATTGAAAGGAG
GGATAAGGATGATCAGGGCCAGGAAAGATATAGATTGACGGAGAAGAAGA
AGGCTGCATAGGCACCGTTCATAGATGTAGAAAGATTTGTTGAGGGTGAA
AGACGCAATGATAAATACTTTTTGGCGTCATTTTGGTAATTTTTGCTTTC
AGCTTCAGGGGGGTGAGGAGGTTAGAAAACCCATCAAAAACTAAAAACGT
G
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Coding sequence (CDS) from alignment at chr13:1031713..1035563-

>NO13G03450.5 ID=NO13G03450.5|Name=NO13G03450.5|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at chr13:1031713..1035563- (Nannochloropsis oceanica)
ATGTCAGAGACTTCTGGGTTTTACTTCCCTACAACTGCTCTATTTATGCA
CTCACAGCTCGGTTTCGATGCGGACATGCTAGAGCTGTTGCTGAGAGAGC
TAAACGACGTTGTGGACAAATTTTTCATCATCGAATCCACGCGAACACAT
AACAAGGGAATCCGAAAGATTCTTCTGTGGGATCATGTCAAGAACCAACC
AAGATTTGAGTTTGTCAAGGAGAAGGTGGTACATATGGTGTTAGATGACA
CGGAGGCCTTCTTAGACTCCAATGAAGAATTTGCCATTGAGAAGTCACAG
GAGAGGACACGTTGGGAATCATTTTTGCGCTGGAACAACCATACACAATT
CTTTGGACCAAATGACCTGGTAGGGTTTGGAGATGTCGACGAGATCCCGT
CCCGAGAAAATGTGCAGCTGCTTCGCCACTGCGAATTGGCCGGCCCGTCG
GTTGACATTGGTTCATGGTTTGCACCCACAAGGCTAAGCGAAGCGTTTCG
ACCCGATTGGCCAGTACCGGGCAACCGTTGGACGCTGGGCGATCCAACTT
ATTGGACAGTGGCCTCTGCAACCATGTTCGGACAAGATGGTGCACAATAT
CCAAGCCGCATGAGGGGTACATCGGGAAAATTTTTGCTAGGAGGCATTCA
TATGACAGACAATGGGTATGCGCCATTTCGCATGGCAAAACTTATCGCCT
GCACGGAATGCAAGGACAGTGCAGCCAGACTTATGACAGATATGGCGACC
ATTTTCAGAGACAACCAAACCAAAGAGGAAACGTTAGCGAGACTAGACAC
GTATTTGAACCCTGTGTGGCCTGACCGCAAACGATTTGTTGGCGGAGAGG
AAATGATAATAAGGCTCGGAGCGGCCTACTACATACCATGGTTCTTGCAA
TGCAACCCAGAGAGGTTTTCCTCTTGGTACGGTAATCTCGACAGCCGTCT
TCATGGGAGTTGA
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Synonyms
Publications