NO13G03380.1, NO13G03380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03380.1
Unique NameNO13G03380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1347
Alignment locationchr13:1006118..1009528 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:1006118..1009528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G03380.1 vs.
Match: WP_013969410.1 (TIGR00266 family protein [Treponema caldarium]; AEJ20120.1 protein of unknown function DUF124 [Treponema caldarium DSM 7334])

HSP 1 Score: 71.6 bits (174), Expect = 6.900e-9
Identity = 58/234 (24.79%), Postives = 109/234 (46.58%), Query Frame = 0
Query:   52 AALEVIFDRRKNESIIADFALIVSRSGNLSLVQEGKQSWLDNGIAVVAALGKKKEGEEVRERIYAQAEQGGSVILAPEYPGNVVIFSMREAIPVIRPSISATAYLPTALLSASTGYMVMAGTHI-LAREGSITSHAIRDCHLTKMLGLAGVRHYQGTGKLALASYGNILRRDLRHGEECIVKKGHLLAWSADIKISRRAGRKVMTANSNEAKGFV--LQGPGTFYVKSHTVSNL 283
            + L +IF+    E + A+   ++S SG + L  +       +G  V   LG    GE +    Y     G  +ILAP YPG+++   +R+                   + A +G  +   TH+ L+ +GS+ +       L    GL  ++   G+G L LASYG I+ + L  G+E +V  G+++A+ A +  + +   + + ++    +G V   +GPG  ++++ ++S L
Sbjct:   12 SVLRLIFEA--GEQVRAEAGAMISMSGTMELKAK------TSGKGVFGTLGAMMGGESLFASEYTAGTSGDELILAPSYPGDILHLPLRDET-----------------IFAQSGAYLAGSTHLQLSSQGSLKA-------LVSGEGLF-LQKISGSGDLWLASYGAIIEKQLNAGDEYVVDTGNMVAFDASLSYTIQTASRGLFSSMASGEGLVCRFRGPGRLWLQTRSISAL 212          
The following BLAST results are available for this feature:
BLAST of NO13G03380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_013969410.16.900e-924.79TIGR00266 family protein [Treponema caldarium]; AE... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03380NO13G03380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03380.1NO13G03380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03380.1.cds1NO13G03380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds2NO13G03380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds3NO13G03380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds4NO13G03380.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds5NO13G03380.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds6NO13G03380.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds7NO13G03380.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds8NO13G03380.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds9NO13G03380.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds10NO13G03380.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds11NO13G03380.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds12NO13G03380.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds13NO13G03380.1.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03380.1.cds14NO13G03380.1.cds14Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03380.1 ID=NO13G03380.1|Name=NO13G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
ATGAGCGACGCCAGCCCCAGCAACAATGGAAGACGGACCAGAATAAGATT
GCAGCGACATGCCATCGCCCTCTCGCCTTTATTTCTTCTCGCTCTGTATA
CGTCTTTCGTTCAATCCATAAAAATGACTGTCATTTCCGCGGGTACCAGC
CAAGCCGCTCTCGAGGTCATTTTCGATCGTCGTAAAAACGAGTCCATCAT
CGCTGATTTTGCTCTCATTGTTTCGAGGTCAGGCAACCTCTCACTTGTCC
AAGAGGGGAAACAGAGCTGGTTGGATAATGGCATTGCCGTAGTTGCTGCA
TTGGGCAAGAAGAAGGAGGGTGAAGAAGTGCGCGAACGCATCTATGCTCA
AGCGGAGCAGGGCGGCAGCGTCATCCTGGCTCCCGAATACCCGGGCAATG
TGGTAATTTTTTCCATGCGAGAAGCGATCCCAGTAATTCGTCCTTCTATC
TCGGCTACTGCCTACCTACCTACAGCCTTATTAAGTGCCAGTACCGGGTA
TATGGTCATGGCGGGCACACATATTTTGGCCAGGGAAGGCTCCATCACCT
CTCATGCCATACGCGACTGTCATCTGACCAAGATGCTGGGCCTGGCTGGC
GTAAGACACTACCAAGGGACAGGAAAGCTGGCTCTGGCTTCATATGGCAA
CATTCTTCGCCGAGACCTTCGCCATGGGGAGGAATGCATCGTCAAAAAAG
GACACCTTCTTGCCTGGAGCGCGGACATCAAAATCTCGCGAAGAGCGGGG
CGAAAGGTTATGACGGCCAACAGTAATGAGGCAAAAGGTTTCGTTCTACA
GGGCCCCGGCACGTTTTATGTCAAATCTCACACGGTGAGCAACCTGCACG
CTTGGTTGTCGTACCCTGCCAGGCAACGACAGATCCCGTCCATAATGCAG
GCCCAAATTTCGGCCGAAGAAGGCGTGCTTGACCGAGAAGATCTCGCGAT
CAAATACATAGGGTGGACAGTGGCAACTATTAGCGGCTTGCTCGTCGCAA
CTAGTATGAAGACAGTACTCCGAGAAGGGCCCGCTGGCCTGTTCAAATTA
CCGGGACGCTTCTATCAGAAGGGAGTGGACACCGCCGCTAGCTTACAAGA
TGCCGCTCATCAAACCCGAGTCTACGTACAATATCAAGGCGGGATAGTGG
GAGAGAAGACAGTTCTTATGTGGGCATGTGTCAAATATGCTCTCATAAGC
CTGCTGCATAAATTCCTGAAGTGGTGCAAAGAAAGCCTTCAATTCCTTTC
TGTAAAAAGCAAAGGCCTTCATGCATTGCTTAAGAAAGTTTTTGACATAA
TGATTCAGGTACGAGCCTTTTTGAGAGGCAGGGGCGGGGCTTATTGA
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protein sequence of NO13G03380.1

>NO13G03380.1-protein ID=NO13G03380.1-protein|Name=NO13G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MSDASPSNNGRRTRIRLQRHAIALSPLFLLALYTSFVQSIKMTVISAGTS
QAALEVIFDRRKNESIIADFALIVSRSGNLSLVQEGKQSWLDNGIAVVAA
LGKKKEGEEVRERIYAQAEQGGSVILAPEYPGNVVIFSMREAIPVIRPSI
SATAYLPTALLSASTGYMVMAGTHILAREGSITSHAIRDCHLTKMLGLAG
VRHYQGTGKLALASYGNILRRDLRHGEECIVKKGHLLAWSADIKISRRAG
RKVMTANSNEAKGFVLQGPGTFYVKSHTVSNLHAWLSYPARQRQIPSIMQ
AQISAEEGVLDREDLAIKYIGWTVATISGLLVATSMKTVLREGPAGLFKL
PGRFYQKGVDTAASLQDAAHQTRVYVQYQGGIVGEKTVLMWACVKYALIS
LLHKFLKWCKESLQFLSVKSKGLHALLKKVFDIMIQVRAFLRGRGGAY*
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mRNA from alignment at chr13:1006118..1009528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03380.1 ID=NO13G03380.1|Name=NO13G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=3411bp|location=Sequence derived from alignment at chr13:1006118..1009528+ (Nannochloropsis oceanica)
ATGAGCGACGCCAGCCCCAGCAACAATGGAAGACGGACCAGAATAAGATT GCAGCGACATGCCATCGGTAAATAAAATTGGAGAGAAGGGAGGTATAGAG CTATGAGGAGAGTGTGCGCTCGACCAAGTGAGACAAGCTTAGGATGCACA TTATAATGATCATGATCATCATCTTCCAGTTAAGGAAGGATGCACGCCCA ACTCTTTCCTTCCCAAATTTCCCAAACCCAATCACCAGCCCTCTCGCCTT TATTTCTTCTCGCTCTGTATACGTCTTTCGTTCAATCCATAAAAATGACT GTCATTTCCGCGGGTACCAGCCAAGCCGCTCTCGAGGTAGGGGGAGAAGC AAGAACGGGGAGGGAAGGAACGAGAGAGTGTGTACACAAGCATACGATCA ACAGTCACGAGTCAAGATTCACATAAGAATGACTGCATCAATTTTGTGCC CTCCTTCCGTTTCTTGAGAGCCATCTCACGTCCATATCATTGTTTCACCT TGCTACCTACACCTCCCTCCTTTTCCTCCCTCTAGGTCATTTTCGATCGT CGTAAAAACGAGTCCATCATCGCTGATTTTGCTCTCATTGTTTCGAGGTA AGGATGCGGAGAAATATTGACAATTGAACACGCGGTGTTTCAAAGCCTAT TGAATGCTTTACTCCTCTTTTCCTTTCGACCTTGCCGTCCATGCTATTTC TCTTTCTCACCAATGCCCGCACATAGCAGGTCAGGCAACCTCTCACTTGT CCAAGAGGGGAAACAGAGCTGGTTGGATAATGGCATTGCCGTAGTTGCTG CATTGGGCAAGAAGAAGGAGGGTGAAGAAGTGGTATGTACATGCTTTGAG TGAATGCACTAGAAGATGATGGTATCTCTGAACAGACAATAACGCCAGAG CTTTTGGGGCTTTTTTGCGGGGGGGGGCAATCGCCATTATGTTCTTTGCC GTCAGCATATCTGCTTGATTAGCGTTACATTTGCAAGGGAAGGTTTTTCT GATTTTCTATTTTGCTTTACCATTTTTATCGGCTGACAGCCAAAGTCAGT GTGAGCCACTATCTGTCTTGCCTATTGTGAGACCGTACGTAATGCCCCAT CTCTTTTTCAATCTATGACTACTTTTCCCGTAGCGCGAACGCATCTATGC TCAAGCGGAGCAGGGCGGCAGCGTCATCCTGGCTCCCGAATACCCGGGCA ATGTGGTGGGTAAATTGAAGAGGTCAAAGTTCGCATATAGTAAATTTTAC CAATGCCTCTCTTCTCACTCACTCTCACACCCATACATACTTGCGTACGA TCAGGTAATTTTTTCCATGCGAGAAGCGATCCCAGTAATTCGTCCTTCTA TCTCGGCTACTGCCTACCTACCTACAGCCTTATTAAGTGCCAGTACCGGG TATATGGTCATGGCGGGCACACATATTTTGGCCAGGTACGATCCCTATAG CAAGCTTTGGGGCACATGTCAGAGATTAATTCTCCAAACAGCATGGCACA CACGCACACACACACACACACATATATATAAACAGGGAAGGCTCCATCAC CTCTCATGCCATACGCGACTGTCATCTGACCAAGATGCTGGGCCTGGCTG GCGTAAGACACTACCAAGGGACAGGAAAGCTGGCTCTGGCTTCATATGGC AACATTCTTCGCCGAGACCTTCGCCATGGGGAGGAATGCATCGTCAAAAA AGGCAAGAATCTCATCAGAAAGATTGAGATAAATTAGATGTGTCGTCAGT CACCGGTTCTCCTCGATGAAAGTTTGCATGATATAATCAAATATACAACT GTCGCTTTACACAGGACACCTTCTTGCCTGGAGCGCGGACATCAAAATCT CGCGAAGAGCGGGGCGAAAGGTTATGACGGGTAAGAAATTGCCGTAAGCC ATTCTTTTACAGGCAATTTCCATTTTTTACTGTTATTAATCGTCTACTGC ATTGCGTGTTAAGTACAGGGAGGTAGACACGCAAACGGAGACCAAATACT CTTGCGCTTTTTGAACGGCAGATATCTCTCTCCCTCATTCCATCCTACCT TCCTCAGCCAACAGTAATGAGGCAAAAGGTTTCGTTCTACAGGGCCCCGG CACGTTTTATGTCAAATCTCACACGGTGAGCAACCTGCACGCTTGGTTGT CGTACCCTGCCAGGCAACGACAGATCCCGTCCATAATGCAGGTAAGATAT GGAAGGCGTACAGATGCACCTTCTATGGTCAAATCATCGAGTCTATGACT TTATAGAGCGCAGGACTAACGAGGAGAGCGAAATATCCTTACAATCATTC GTTAGTCGACAATTTTTTGGTGCATGATGCCACATAAATCGATGAAATCT CTATTTTGTCTTCCCATATAATTACGCCAGGCCCAAATTTCGGCCGAAGA AGGCGTGCTTGACCGAGAAGATCTCGCGATCAAATACATAGGGTGAGTGC CCCTTGTCTTGGTTAAAAAGCAGCATATTGCGGCCTGCTTTGAATGAGCA CAGTAGCCAACACACTTTCTCACGCCATATATATATATATATATATATAG GTGGACAGTGGCAACTATTAGCGGCTTGCTCGTCGCAACTAGTATGAAGG TAACCTTAACTCTTACAGGGAAGGCGGAGGATGGCCAAAATAATTCAATT AGCAATGCATGTGCTCCCGTTTCTCTGCTTTGAGAATATGCGATAGGCTT TTCTTACACTAACGCGACTCCCACGGGCAATAGACAGTACTCCGAGAAGG GCCCGCTGGCCTGTTCAAATTACCGGGACGCTTCTATCAGAAGGGAGTGG TGAGTATCGTTGTCGTCACAAGAGAGTCATTCGTTATTTATCGCTTTTTC ATGTAAAATTTATTCTTGGCTGGCGTTTGTCTGGTTCTGCCGAGCGCCAG AGATTATCCAGACCCACATTTTAGCCCATTCTCAAAAAAAACATATTTTC CTTGCATGAAAACCACAGGACACCGCCGCTAGCTTACAAGATGCCGCTCA TCAAACCCGAGTCTACGTACAATATCAAGGCGGGATAGTGGGAGAGAAGA CAGTTCTTATGTGGGCATGTGTCAAGTACGTTTATAATAGTAAGGGATGG TAGATTTGTTGATTTGATGGCACGTGTGGATGCTTTAGCATAAAGATTTC TGGGTGTATACGTGCGTAAACCTTGCAAAACTGAGACCAAAGAGGGCCAC ACATAAGAAGACTTATCAATATTTCTCGCATGATATTCATACATGAAGAT ATGCTCTCATAAGCCTGCTGCATAAATTCCTGAAGTGGTGCAAAGAAAGC CTTCAATTCCTTTCTGTAAAAAGCAAAGGCCTTCATGCATTGCTTAAGAA AGTTTTTGACATAATGATTCAGGTACGAGCCTTTTTGAGAGGCAGGGGCG GGGCTTATTGA
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Coding sequence (CDS) from alignment at chr13:1006118..1009528+

>NO13G03380.1 ID=NO13G03380.1|Name=NO13G03380.1|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr13:1006118..1009528+ (Nannochloropsis oceanica)
ATGAGCGACGCCAGCCCCAGCAACAATGGAAGACGGACCAGAATAAGATT
GCAGCGACATGCCATCGCCCTCTCGCCTTTATTTCTTCTCGCTCTGTATA
CGTCTTTCGTTCAATCCATAAAAATGACTGTCATTTCCGCGGGTACCAGC
CAAGCCGCTCTCGAGGTCATTTTCGATCGTCGTAAAAACGAGTCCATCAT
CGCTGATTTTGCTCTCATTGTTTCGAGGTCAGGCAACCTCTCACTTGTCC
AAGAGGGGAAACAGAGCTGGTTGGATAATGGCATTGCCGTAGTTGCTGCA
TTGGGCAAGAAGAAGGAGGGTGAAGAAGTGCGCGAACGCATCTATGCTCA
AGCGGAGCAGGGCGGCAGCGTCATCCTGGCTCCCGAATACCCGGGCAATG
TGGTAATTTTTTCCATGCGAGAAGCGATCCCAGTAATTCGTCCTTCTATC
TCGGCTACTGCCTACCTACCTACAGCCTTATTAAGTGCCAGTACCGGGTA
TATGGTCATGGCGGGCACACATATTTTGGCCAGGGAAGGCTCCATCACCT
CTCATGCCATACGCGACTGTCATCTGACCAAGATGCTGGGCCTGGCTGGC
GTAAGACACTACCAAGGGACAGGAAAGCTGGCTCTGGCTTCATATGGCAA
CATTCTTCGCCGAGACCTTCGCCATGGGGAGGAATGCATCGTCAAAAAAG
GACACCTTCTTGCCTGGAGCGCGGACATCAAAATCTCGCGAAGAGCGGGG
CGAAAGGTTATGACGGCCAACAGTAATGAGGCAAAAGGTTTCGTTCTACA
GGGCCCCGGCACGTTTTATGTCAAATCTCACACGGTGAGCAACCTGCACG
CTTGGTTGTCGTACCCTGCCAGGCAACGACAGATCCCGTCCATAATGCAG
GCCCAAATTTCGGCCGAAGAAGGCGTGCTTGACCGAGAAGATCTCGCGAT
CAAATACATAGGGTGGACAGTGGCAACTATTAGCGGCTTGCTCGTCGCAA
CTAGTATGAAGACAGTACTCCGAGAAGGGCCCGCTGGCCTGTTCAAATTA
CCGGGACGCTTCTATCAGAAGGGAGTGGACACCGCCGCTAGCTTACAAGA
TGCCGCTCATCAAACCCGAGTCTACGTACAATATCAAGGCGGGATAGTGG
GAGAGAAGACAGTTCTTATGTGGGCATGTGTCAAATATGCTCTCATAAGC
CTGCTGCATAAATTCCTGAAGTGGTGCAAAGAAAGCCTTCAATTCCTTTC
TGTAAAAAGCAAAGGCCTTCATGCATTGCTTAAGAAAGTTTTTGACATAA
TGATTCAGGTACGAGCCTTTTTGAGAGGCAGGGGCGGGGCTTATTGA
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Synonyms
Publications