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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:1006118..1009528 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03380.1 vs.
Match: WP_013969410.1 (TIGR00266 family protein [Treponema caldarium]; AEJ20120.1 protein of unknown function DUF124 [Treponema caldarium DSM 7334]) HSP 1 Score: 71.6 bits (174), Expect = 6.900e-9 Identity = 58/234 (24.79%), Postives = 109/234 (46.58%), Query Frame = 0
Query: 52 AALEVIFDRRKNESIIADFALIVSRSGNLSLVQEGKQSWLDNGIAVVAALGKKKEGEEVRERIYAQAEQGGSVILAPEYPGNVVIFSMREAIPVIRPSISATAYLPTALLSASTGYMVMAGTHI-LAREGSITSHAIRDCHLTKMLGLAGVRHYQGTGKLALASYGNILRRDLRHGEECIVKKGHLLAWSADIKISRRAGRKVMTANSNEAKGFV--LQGPGTFYVKSHTVSNL 283
+ L +IF+ E + A+ ++S SG + L + +G V LG GE + Y G +ILAP YPG+++ +R+ + A +G + TH+ L+ +GS+ + L GL ++ G+G L LASYG I+ + L G+E +V G+++A+ A + + + + + ++ +G V +GPG ++++ ++S L
Sbjct: 12 SVLRLIFEA--GEQVRAEAGAMISMSGTMELKAK------TSGKGVFGTLGAMMGGESLFASEYTAGTSGDELILAPSYPGDILHLPLRDET-----------------IFAQSGAYLAGSTHLQLSSQGSLKA-------LVSGEGLF-LQKISGSGDLWLASYGAIIEKQLNAGDEYVVDTGNMVAFDASLSYTIQTASRGLFSSMASGEGLVCRFRGPGRLWLQTRSISAL 212
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03380.1 ID=NO13G03380.1|Name=NO13G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp ATGAGCGACGCCAGCCCCAGCAACAATGGAAGACGGACCAGAATAAGATT GCAGCGACATGCCATCGCCCTCTCGCCTTTATTTCTTCTCGCTCTGTATA CGTCTTTCGTTCAATCCATAAAAATGACTGTCATTTCCGCGGGTACCAGC CAAGCCGCTCTCGAGGTCATTTTCGATCGTCGTAAAAACGAGTCCATCAT CGCTGATTTTGCTCTCATTGTTTCGAGGTCAGGCAACCTCTCACTTGTCC AAGAGGGGAAACAGAGCTGGTTGGATAATGGCATTGCCGTAGTTGCTGCA TTGGGCAAGAAGAAGGAGGGTGAAGAAGTGCGCGAACGCATCTATGCTCA AGCGGAGCAGGGCGGCAGCGTCATCCTGGCTCCCGAATACCCGGGCAATG TGGTAATTTTTTCCATGCGAGAAGCGATCCCAGTAATTCGTCCTTCTATC TCGGCTACTGCCTACCTACCTACAGCCTTATTAAGTGCCAGTACCGGGTA TATGGTCATGGCGGGCACACATATTTTGGCCAGGGAAGGCTCCATCACCT CTCATGCCATACGCGACTGTCATCTGACCAAGATGCTGGGCCTGGCTGGC GTAAGACACTACCAAGGGACAGGAAAGCTGGCTCTGGCTTCATATGGCAA CATTCTTCGCCGAGACCTTCGCCATGGGGAGGAATGCATCGTCAAAAAAG GACACCTTCTTGCCTGGAGCGCGGACATCAAAATCTCGCGAAGAGCGGGG CGAAAGGTTATGACGGCCAACAGTAATGAGGCAAAAGGTTTCGTTCTACA GGGCCCCGGCACGTTTTATGTCAAATCTCACACGGTGAGCAACCTGCACG CTTGGTTGTCGTACCCTGCCAGGCAACGACAGATCCCGTCCATAATGCAG GCCCAAATTTCGGCCGAAGAAGGCGTGCTTGACCGAGAAGATCTCGCGAT CAAATACATAGGGTGGACAGTGGCAACTATTAGCGGCTTGCTCGTCGCAA CTAGTATGAAGACAGTACTCCGAGAAGGGCCCGCTGGCCTGTTCAAATTA CCGGGACGCTTCTATCAGAAGGGAGTGGACACCGCCGCTAGCTTACAAGA TGCCGCTCATCAAACCCGAGTCTACGTACAATATCAAGGCGGGATAGTGG GAGAGAAGACAGTTCTTATGTGGGCATGTGTCAAATATGCTCTCATAAGC CTGCTGCATAAATTCCTGAAGTGGTGCAAAGAAAGCCTTCAATTCCTTTC TGTAAAAAGCAAAGGCCTTCATGCATTGCTTAAGAAAGTTTTTGACATAA TGATTCAGGTACGAGCCTTTTTGAGAGGCAGGGGCGGGGCTTATTGA back to topprotein sequence of NO13G03380.1 >NO13G03380.1-protein ID=NO13G03380.1-protein|Name=NO13G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp MSDASPSNNGRRTRIRLQRHAIALSPLFLLALYTSFVQSIKMTVISAGTS QAALEVIFDRRKNESIIADFALIVSRSGNLSLVQEGKQSWLDNGIAVVAA LGKKKEGEEVRERIYAQAEQGGSVILAPEYPGNVVIFSMREAIPVIRPSI SATAYLPTALLSASTGYMVMAGTHILAREGSITSHAIRDCHLTKMLGLAG VRHYQGTGKLALASYGNILRRDLRHGEECIVKKGHLLAWSADIKISRRAG RKVMTANSNEAKGFVLQGPGTFYVKSHTVSNLHAWLSYPARQRQIPSIMQ AQISAEEGVLDREDLAIKYIGWTVATISGLLVATSMKTVLREGPAGLFKL PGRFYQKGVDTAASLQDAAHQTRVYVQYQGGIVGEKTVLMWACVKYALIS LLHKFLKWCKESLQFLSVKSKGLHALLKKVFDIMIQVRAFLRGRGGAY* back to topmRNA from alignment at chr13:1006118..1009528+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03380.1 ID=NO13G03380.1|Name=NO13G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=3411bp|location=Sequence derived from alignment at chr13:1006118..1009528+ (Nannochloropsis oceanica) ATGAGCGACGCCAGCCCCAGCAACAATGGAAGACGGACCAGAATAAGATT
GCAGCGACATGCCATCGGTAAATAAAATTGGAGAGAAGGGAGGTATAGAG
CTATGAGGAGAGTGTGCGCTCGACCAAGTGAGACAAGCTTAGGATGCACA
TTATAATGATCATGATCATCATCTTCCAGTTAAGGAAGGATGCACGCCCA
ACTCTTTCCTTCCCAAATTTCCCAAACCCAATCACCAGCCCTCTCGCCTT
TATTTCTTCTCGCTCTGTATACGTCTTTCGTTCAATCCATAAAAATGACT
GTCATTTCCGCGGGTACCAGCCAAGCCGCTCTCGAGGTAGGGGGAGAAGC
AAGAACGGGGAGGGAAGGAACGAGAGAGTGTGTACACAAGCATACGATCA
ACAGTCACGAGTCAAGATTCACATAAGAATGACTGCATCAATTTTGTGCC
CTCCTTCCGTTTCTTGAGAGCCATCTCACGTCCATATCATTGTTTCACCT
TGCTACCTACACCTCCCTCCTTTTCCTCCCTCTAGGTCATTTTCGATCGT
CGTAAAAACGAGTCCATCATCGCTGATTTTGCTCTCATTGTTTCGAGGTA
AGGATGCGGAGAAATATTGACAATTGAACACGCGGTGTTTCAAAGCCTAT
TGAATGCTTTACTCCTCTTTTCCTTTCGACCTTGCCGTCCATGCTATTTC
TCTTTCTCACCAATGCCCGCACATAGCAGGTCAGGCAACCTCTCACTTGT
CCAAGAGGGGAAACAGAGCTGGTTGGATAATGGCATTGCCGTAGTTGCTG
CATTGGGCAAGAAGAAGGAGGGTGAAGAAGTGGTATGTACATGCTTTGAG
TGAATGCACTAGAAGATGATGGTATCTCTGAACAGACAATAACGCCAGAG
CTTTTGGGGCTTTTTTGCGGGGGGGGGCAATCGCCATTATGTTCTTTGCC
GTCAGCATATCTGCTTGATTAGCGTTACATTTGCAAGGGAAGGTTTTTCT
GATTTTCTATTTTGCTTTACCATTTTTATCGGCTGACAGCCAAAGTCAGT
GTGAGCCACTATCTGTCTTGCCTATTGTGAGACCGTACGTAATGCCCCAT
CTCTTTTTCAATCTATGACTACTTTTCCCGTAGCGCGAACGCATCTATGC
TCAAGCGGAGCAGGGCGGCAGCGTCATCCTGGCTCCCGAATACCCGGGCA
ATGTGGTGGGTAAATTGAAGAGGTCAAAGTTCGCATATAGTAAATTTTAC
CAATGCCTCTCTTCTCACTCACTCTCACACCCATACATACTTGCGTACGA
TCAGGTAATTTTTTCCATGCGAGAAGCGATCCCAGTAATTCGTCCTTCTA
TCTCGGCTACTGCCTACCTACCTACAGCCTTATTAAGTGCCAGTACCGGG
TATATGGTCATGGCGGGCACACATATTTTGGCCAGGTACGATCCCTATAG
CAAGCTTTGGGGCACATGTCAGAGATTAATTCTCCAAACAGCATGGCACA
CACGCACACACACACACACACATATATATAAACAGGGAAGGCTCCATCAC
CTCTCATGCCATACGCGACTGTCATCTGACCAAGATGCTGGGCCTGGCTG
GCGTAAGACACTACCAAGGGACAGGAAAGCTGGCTCTGGCTTCATATGGC
AACATTCTTCGCCGAGACCTTCGCCATGGGGAGGAATGCATCGTCAAAAA
AGGCAAGAATCTCATCAGAAAGATTGAGATAAATTAGATGTGTCGTCAGT
CACCGGTTCTCCTCGATGAAAGTTTGCATGATATAATCAAATATACAACT
GTCGCTTTACACAGGACACCTTCTTGCCTGGAGCGCGGACATCAAAATCT
CGCGAAGAGCGGGGCGAAAGGTTATGACGGGTAAGAAATTGCCGTAAGCC
ATTCTTTTACAGGCAATTTCCATTTTTTACTGTTATTAATCGTCTACTGC
ATTGCGTGTTAAGTACAGGGAGGTAGACACGCAAACGGAGACCAAATACT
CTTGCGCTTTTTGAACGGCAGATATCTCTCTCCCTCATTCCATCCTACCT
TCCTCAGCCAACAGTAATGAGGCAAAAGGTTTCGTTCTACAGGGCCCCGG
CACGTTTTATGTCAAATCTCACACGGTGAGCAACCTGCACGCTTGGTTGT
CGTACCCTGCCAGGCAACGACAGATCCCGTCCATAATGCAGGTAAGATAT
GGAAGGCGTACAGATGCACCTTCTATGGTCAAATCATCGAGTCTATGACT
TTATAGAGCGCAGGACTAACGAGGAGAGCGAAATATCCTTACAATCATTC
GTTAGTCGACAATTTTTTGGTGCATGATGCCACATAAATCGATGAAATCT
CTATTTTGTCTTCCCATATAATTACGCCAGGCCCAAATTTCGGCCGAAGA
AGGCGTGCTTGACCGAGAAGATCTCGCGATCAAATACATAGGGTGAGTGC
CCCTTGTCTTGGTTAAAAAGCAGCATATTGCGGCCTGCTTTGAATGAGCA
CAGTAGCCAACACACTTTCTCACGCCATATATATATATATATATATATAG
GTGGACAGTGGCAACTATTAGCGGCTTGCTCGTCGCAACTAGTATGAAGG
TAACCTTAACTCTTACAGGGAAGGCGGAGGATGGCCAAAATAATTCAATT
AGCAATGCATGTGCTCCCGTTTCTCTGCTTTGAGAATATGCGATAGGCTT
TTCTTACACTAACGCGACTCCCACGGGCAATAGACAGTACTCCGAGAAGG
GCCCGCTGGCCTGTTCAAATTACCGGGACGCTTCTATCAGAAGGGAGTGG
TGAGTATCGTTGTCGTCACAAGAGAGTCATTCGTTATTTATCGCTTTTTC
ATGTAAAATTTATTCTTGGCTGGCGTTTGTCTGGTTCTGCCGAGCGCCAG
AGATTATCCAGACCCACATTTTAGCCCATTCTCAAAAAAAACATATTTTC
CTTGCATGAAAACCACAGGACACCGCCGCTAGCTTACAAGATGCCGCTCA
TCAAACCCGAGTCTACGTACAATATCAAGGCGGGATAGTGGGAGAGAAGA
CAGTTCTTATGTGGGCATGTGTCAAGTACGTTTATAATAGTAAGGGATGG
TAGATTTGTTGATTTGATGGCACGTGTGGATGCTTTAGCATAAAGATTTC
TGGGTGTATACGTGCGTAAACCTTGCAAAACTGAGACCAAAGAGGGCCAC
ACATAAGAAGACTTATCAATATTTCTCGCATGATATTCATACATGAAGAT
ATGCTCTCATAAGCCTGCTGCATAAATTCCTGAAGTGGTGCAAAGAAAGC
CTTCAATTCCTTTCTGTAAAAAGCAAAGGCCTTCATGCATTGCTTAAGAA
AGTTTTTGACATAATGATTCAGGTACGAGCCTTTTTGAGAGGCAGGGGCG
GGGCTTATTGA back to topCoding sequence (CDS) from alignment at chr13:1006118..1009528+ >NO13G03380.1 ID=NO13G03380.1|Name=NO13G03380.1|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr13:1006118..1009528+ (Nannochloropsis oceanica) ATGAGCGACGCCAGCCCCAGCAACAATGGAAGACGGACCAGAATAAGATT GCAGCGACATGCCATCGCCCTCTCGCCTTTATTTCTTCTCGCTCTGTATA CGTCTTTCGTTCAATCCATAAAAATGACTGTCATTTCCGCGGGTACCAGC CAAGCCGCTCTCGAGGTCATTTTCGATCGTCGTAAAAACGAGTCCATCAT CGCTGATTTTGCTCTCATTGTTTCGAGGTCAGGCAACCTCTCACTTGTCC AAGAGGGGAAACAGAGCTGGTTGGATAATGGCATTGCCGTAGTTGCTGCA TTGGGCAAGAAGAAGGAGGGTGAAGAAGTGCGCGAACGCATCTATGCTCA AGCGGAGCAGGGCGGCAGCGTCATCCTGGCTCCCGAATACCCGGGCAATG TGGTAATTTTTTCCATGCGAGAAGCGATCCCAGTAATTCGTCCTTCTATC TCGGCTACTGCCTACCTACCTACAGCCTTATTAAGTGCCAGTACCGGGTA TATGGTCATGGCGGGCACACATATTTTGGCCAGGGAAGGCTCCATCACCT CTCATGCCATACGCGACTGTCATCTGACCAAGATGCTGGGCCTGGCTGGC GTAAGACACTACCAAGGGACAGGAAAGCTGGCTCTGGCTTCATATGGCAA CATTCTTCGCCGAGACCTTCGCCATGGGGAGGAATGCATCGTCAAAAAAG GACACCTTCTTGCCTGGAGCGCGGACATCAAAATCTCGCGAAGAGCGGGG CGAAAGGTTATGACGGCCAACAGTAATGAGGCAAAAGGTTTCGTTCTACA GGGCCCCGGCACGTTTTATGTCAAATCTCACACGGTGAGCAACCTGCACG CTTGGTTGTCGTACCCTGCCAGGCAACGACAGATCCCGTCCATAATGCAG GCCCAAATTTCGGCCGAAGAAGGCGTGCTTGACCGAGAAGATCTCGCGAT CAAATACATAGGGTGGACAGTGGCAACTATTAGCGGCTTGCTCGTCGCAA CTAGTATGAAGACAGTACTCCGAGAAGGGCCCGCTGGCCTGTTCAAATTA CCGGGACGCTTCTATCAGAAGGGAGTGGACACCGCCGCTAGCTTACAAGA TGCCGCTCATCAAACCCGAGTCTACGTACAATATCAAGGCGGGATAGTGG GAGAGAAGACAGTTCTTATGTGGGCATGTGTCAAATATGCTCTCATAAGC CTGCTGCATAAATTCCTGAAGTGGTGCAAAGAAAGCCTTCAATTCCTTTC TGTAAAAAGCAAAGGCCTTCATGCATTGCTTAAGAAAGTTTTTGACATAA TGATTCAGGTACGAGCCTTTTTGAGAGGCAGGGGCGGGGCTTATTGA back to top
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