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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:995799..1000440 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03350.1 vs.
Match: EWM26661.1 (cellulase 2 [Nannochloropsis gaditana]) HSP 1 Score: 379.0 bits (972), Expect = 1.900e-101 Identity = 181/414 (43.72%), Postives = 255/414 (61.59%), Query Frame = 0
Query: 21 LGHVSSESTGALRGGNSTTTRALAPAQCLDKATLDWTSSPNGAVLLNGKPFHIKGISWFGLEKGEEMLHGLNKRPMGDILDF-VKSNFNVIRLPFSVKFALSDQRSKRPDPYIVGFGLEDLTSWEVLDKFMDECAERGLFVMLDQHDIVGDKA-ELWYEGVYTEEYSIKAWEVMFERYGNHYNMFAADLRNEPHGLASWGESSPLTDYNHYYERLINRLARKFPDWKGLWLVEGTQYNNEGYE-PPVPQWWGGNLEGAKQWPIKLDTAAADARLVYAPHIYGPSVYEHGYMKEP--DFPNNLPAIWEKMYGFIIPDLKKGVIIGEWGGSCIGKDQVVQYKLGEWLRQKCMANNVWWALNPGSDDTGGLLKPDWYTVDYVKMNLLDMVQPHPTRVQYVTKDQICMDWGAFSNPNC 430
L +V + S LR P C D L W+S +G + N PF +KGISWFG E GLN + IL+F ++ FN +R+P SV F L+ + K P+ VG GL+ T WE+LD+ +D+ A RGL VMLD H + +A +LWY+ Y E ++AW + Y +N+FA DL+NEPHG+A+WG S+P TDYN +YER I + +FP+WKGL++VEG QYN E + P WWGGN GA Q PI + R+VY+PH+YGP VY+H YM P + N L +W+ G++IP L+KG+IIGEWGGS G+D++VQ +L +WL + CMANNVWWA+NP S DTGG++ +W T D +++L+D + P PT+ + ++C+ +G + NP C
Sbjct: 49 LSYVKTPSLDELRA-------TFVPDTCFDSFDLAWSSGKDGQIYANTAPFFVKGISWFGCEGHGYTFTGLNFTTVDTILNFFLQHKFNTVRIPVSVAFGLAPKDFK-PNQRFVGKGLKGKTIWEILDEVIDQAALRGLMVMLDMHTLGPQEATDLWYDEQYKEADILQAWSNIMAAYSIKWNVFALDLKNEPHGIATWGVSAPQTDYNKFYERAIAHIHTQFPNWKGLYMVEGVQYNKETDKVTDYPFWWGGNFGGAIQHPIYVPVPEVMNRVVYSPHVYGPDVYDHPYMNVPAAELANELVKVWDSQMGWLIPKLQKGMIIGEWGGSLKGRDEIVQTELAKWLVKNCMANNVWWAINPESSDTGGIMAWNWKTYDKRRLDLVDSIFPDPTQFG-IKHSKLCLRFGTYPNPQC 453
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03350.1 ID=NO13G03350.1|Name=NO13G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp ATTCGAAGGGTACATGCTGGTGCACCATCCTCCACCTTCTAAAAGTTTAT ACTTTTCCAAAGCTCGTCACAATGCATCCATGTAACGGGGAAATTGTGAG GCGAACAGCCAGGCACTGTTTCTTCCCTGAATCTGCTCTTTTTATGTTGG TCCAGCACCACATACTTTCTCAGCTCAGCGATGCTATTACGGAGGTCGGG TACTTTAGCCTCCCGAATGCAAACAGCGGCGACTACGGGCAGGGGACAAT GCAGCCACCCACGCACGCAGTTACGAAGGTATATTTCTAGGAATATTATC TTTCCTTGATCCCGGGCTTGCCATGACCAAGAGTCCGGTTTAATGGTCGA CGCGAGCCAAGCCCCCCGCGCGTACGAACGCTTGCTGGATACGGCTGGCG CTGTGCCGTCTCGCTTGATCTTTTCCGCATTCCGATCGCGTTCCAAGGCA CCACTACGCCTGCCCAACCTCTTACTAGCTCCACTCACTGCTTCTCCTCT TATCTTCTCTTCCTCATGACCATCTCTAAGCCCCTGCTCCCACCTCCAGA GGACCTAAACTGTCGAGGAACAGCAAAAACCCTGCGAGCATCTGCAGGAC GAGGCACATGTGCAAAGCGACTCACGTACCCTGTATTTTCCGCACCCCTG TCTACACCACATGCCCATGCATGCGACTCGCGCACATCTTCTTCTTACCC TGCCCGGCCCCTCCTCATCTCTTTCCACCCATCCCTACAGGCAAGCCGAG GCAGCACTCACAGCTCGCCCGCCTCTTTTCCGTCTCGTCGGCCTATTGGA GTCCGCCAGCAACAGCACCACTCTACACAGCGCTCTTCCTCCTGCCCCTC AACCACCAACCTAATCTGCAAGCACAAAAATGGCAAGACTGTCTTCCTCC TCCGTCCTCCTCTCAGGTCTCCTGTTGAGCGCCATCCTTCTTGGCCATGT CTCTTCCGAGTCCACCGGCGCATTGCGAGGCGGGAACAGCACCACCACAC GGGCCCTGGCGCCTGCGCAGTGTCTGGACAAGGCCACGTTGGATTGGACT TCCTCACCCAACGGCGCTGTACTCTTGAACGGGAAGCCTTTCCACATCAA GGGCATCTCGTGGTTCGGCCTGGAGAAGGGCGAGGAAATGCTGCACGGCC TCAACAAGCGGCCCATGGGCGACATTCTGGACTTTGTCAAGTCCAACTTC AATGTCATCCGTCTTCCCTTCTCCGTCAAATTCGCGCTCTCGGACCAACG CTCCAAGAGACCCGACCCCTACATCGTGGGCTTCGGCCTCGAGGACCTGA CCTCCTGGGAGGTGCTTGATAAGTTCATGGACGAGTGCGCCGAGCGCGGC CTCTTCGTCATGCTGGACCAGCACGACATCGTGGGTGACAAGGCCGAGTT GTGGTATGAGGGCGTATACACGGAGGAGTACAGCATTAAGGCCTGGGAGG TTATGTTCGAGCGTTACGGCAACCATTACAACATGTTCGCGGCTGATCTC CGCAACGAGCCGCACGGACTGGCGTCCTGGGGCGAATCCTCCCCCCTCAC GGACTACAATCACTACTACGAGAGGCTCATCAACCGCCTCGCCCGCAAGT TCCCGGATTGGAAGGGCCTCTGGCTAGTGGAAGGCACTCAGTACAATAAT GAGGGGTATGAGCCTCCTGTGCCGCAATGGTGGGGAGGTAACCTGGAGGG GGCCAAGCAGTGGCCCATCAAGCTTGACACAGCCGCCGCTGATGCGCGCC TGGTGTACGCTCCCCACATTTATGGCCCATCGGTCTACGAACACGGCTAC ATGAAGGAGCCTGACTTTCCCAACAATCTCCCCGCCATCTGGGAAAAAAT GTACGGCTTTATCATTCCCGACTTGAAGAAAGGCGTCATCATCGGCGAGT GGGGCGGCTCCTGCATCGGCAAAGACCAGGTGGTGCAGTACAAGCTCGGT GAGTGGCTCAGGCAGAAGTGCATGGCCAATAACGTCTGGTGGGCGCTCAA TCCGGGTTCCGACGACACGGGCGGCCTCCTCAAGCCCGATTGGTACACAG TGGATTACGTCAAGATGAACCTCCTCGATATGGTCCAGCCCCACCCTACC CGGGTGCAATACGTCACCAAAGACCAGATTTGCATGGACTGGGGCGCCTT CAGCAACCCCAACTGCAAGCCCTAAACTGAGAGGCGCACCCA back to topprotein sequence of NO13G03350.1 >NO13G03350.1-protein ID=NO13G03350.1-protein|Name=NO13G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp MARLSSSSVLLSGLLLSAILLGHVSSESTGALRGGNSTTTRALAPAQCLD KATLDWTSSPNGAVLLNGKPFHIKGISWFGLEKGEEMLHGLNKRPMGDIL DFVKSNFNVIRLPFSVKFALSDQRSKRPDPYIVGFGLEDLTSWEVLDKFM DECAERGLFVMLDQHDIVGDKAELWYEGVYTEEYSIKAWEVMFERYGNHY NMFAADLRNEPHGLASWGESSPLTDYNHYYERLINRLARKFPDWKGLWLV EGTQYNNEGYEPPVPQWWGGNLEGAKQWPIKLDTAAADARLVYAPHIYGP SVYEHGYMKEPDFPNNLPAIWEKMYGFIIPDLKKGVIIGEWGGSCIGKDQ VVQYKLGEWLRQKCMANNVWWALNPGSDDTGGLLKPDWYTVDYVKMNLLD MVQPHPTRVQYVTKDQICMDWGAFSNPNCKP* back to topmRNA from alignment at chr13:995799..1000440- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03350.1 ID=NO13G03350.1|Name=NO13G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=4642bp|location=Sequence derived from alignment at chr13:995799..1000440- (Nannochloropsis oceanica) ATTCGAAGGGTACATGCTGGTGCACCATCCTCCACCTTCTAAAAGTTTAT
ACTTTTCCAAAGCTCGTCACAATGCATCCATGTAACGGGGAAATTGTGAG
GCGAACAGCCAGGCACTGTTTCTTCCCTGAATCTGCTCTTTTTATGTTGG
TCCAGCACCACATACTTTCTCAGCTCAGCGATGCTATTACGGAGGTCGGG
TACTTTAGCCTCCCGAATGCAAACAGCGGCGACTACGGGCAGGGGACAAT
GCAGCCACCCACGCACGCAGTTACGAAGGTATATTTCTAGGAATATTATC
TTTCCTTGATCCCGGGCTTGCCATGACCAAGAGTCCGGTTTAATGGTCGA
CGCGAGCCAAGCCCCCCGCGCGTACGAACGCTTGCTGGATACGGCTGGCG
CTGTGCCGTCTCGCTTGATCTTTTCCGCATTCCGATCGCGTTCCAAGGCA
CCACTACGCCTGCCCAACCTCTTACTAGCTCCACTCACTGCTTCTCCTCT
TATCTTCTCTTCCTCATGACCATCTCTAAGCCCCTGCTCCCACCTCCAGA
GGACCTAAACTGTCGAGGAACAGCAAAAACCCTGCGAGCATCTGCAGGAC
GAGGCACATGTGCAAAGCGACTCACGTACCCTGTATTTTCCGCACCCCTG
TCTACACCACATGCCCATGCATGCGACTCGCGCACATCTTCTTCTTACCC
TGCCCGGCCCCTCCTCATCTCTTTCCACCCATCCCTACAGGCAAGCCGAG
GCAGCACTCACAGCTCGCCCGCCTCTTTTCCGTCTCGTCGGCCTATTGGA
GTCCGCCAGCAACAGCACCACTCTACACAGCGCTCTTCCTCCTGCCCCTC
AACCACCAACCTAATCTGCAAGCACAAAAATGGCAAGACTGTCTTCCTCC
TCCGTCCTCCTCTCAGGTCTCCTGTTGAGCGCCATCCTTCTTGGCCATGT
CTCTTCCGAGTCCACCGGCGCATTGCGAGGCGGGAACAGCACCACCACAC
GGGCCCTGGCGCCTGCGCAGGTAAGATAGAAGGAAGAGAGGGAGGAACGG
AGAGAGGGGAAGGAGGACAATGCCGGGCGGGGGTTGAGGAAAGGGAGATA
GATAGATGATTGTCTGAAAGCGGGTGCGTGGTGGGGGTGGAACAGCTCGG
CTCGACTGCCACAAGACCTACATTCCTTGCAGCGAATGAGGGAGGGAGGG
AGGGGCGGAGGGTCGGGACTGTCGCTCGCGAATCACAGGAGAAGATGCCA
TGGGTGCGATGATGTGATCACAGCGGTTTATCGTGAAAGGAAGGGAGGCC
TGCATTGCCTGCATCGCCCAAACACTATGCAGCGGATAGGACAGCTTCCA
CTAACTTCCCCGTCTTCCCTTCCTCCCCTTCTCCCTCTCTCCCTCCCTCT
CTCCCTCTTTCCATCAGTGTCTGGACAAGGCCACGTTGGATTGGACTTCC
TCACCCAACGGCGCTGTACTCTTGAACGGGAAGCCTTTCCACATCAAGGG
TAGGTGGGGGGAGGGAGGGAAGGAGAGGGGGGAGGGAGGGCAGGAAAGGA
GGGACGGAGACACATTTGGCTATATGTGTAGCTCGGGACGCTACTTTTAA
GACGACAGCATCACAATCGTGGCGCCTTTCCCCCTCTCTTCTCACCTCCC
TCCTTCCTTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCGCCTGCAGGCAT
CTCGTGGTTCGGCCTGGAGAAGGGCGAGGAAATGCTGCACGGCCTCAACA
AGCGGCCCATGGGCGACATTCTGGACTTTGTCAAGGTATACCCTTCATCG
GTCCCTCCCTCCCGCCCTCCCTCCCTCCTTGCCATCCTGGCTTTCCTTCT
CTTGTCACTCTCTCCCCCTCCCTTCCTCCTCCCAAGCTGCCAAATCTCAC
CCCTCCCTCCCTCCCTCCCTCCCTCTCTCCAGTCCAACTTCAATGTCATC
CGTCTTCCCTTCTCCGTCAAATTCGCGCTCTCGGACCAACGCTCCAAGAG
ACCCGACCCCTACATCGTGGGCTTCGGCCTCGAGGTAAGCCCGCCCTCCC
TCCCTCCCTCCCTTCCTCCCTCCCTCCCTCTCACCCTCTAGTTTATCGAG
ACCTCAACCCCCCCCTAACAGTCCTCACCCCCTCCCTCTCTCCCCCCCTC
CTTCCCTCCTTGCAGGACCTGACCTCCTGGGAGGTGCTTGATAAGTTCAT
GGACGAGTGCGCCGAGCGCGGCCTCTTCGTCATGCTGGACCAGCACGACA
TCGTGGGTGACAAGGCCGAGTTGTGGTATGAGGTACGTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCACCCTCCCTCCCTCTTTCGATCCCTCTC
TCCCTTTCTCGATCTCCTTCGACTCTCCCTTCCTCCCTCTATCCCCCCGC
CCTCGACGTACTCCTCCGCATCTCACCCTTCCTCCGTCCCTCCCTCCCCT
CCTGCCCCCCTACCTGGTAGGGCGTATACACGGAGGAGTACAGCATTAAG
GCCTGGGAGGTTATGTTCGAGCGTTACGGCAACCATTACAACATGTTCGC
GGCTGATCTCCGGTGCGCCCTCCCTCCCTCCCTCCGTCCGCATCTCATCC
TTCCTCCCTCCCTCCCTCCGTCCCTTCCTCCCTTTTTTTTATTCATTCTT
GGCAATCCACTCACATCCCTCCCTACCTCCTTCCCTCCGTCCCTCTCTCA
TTCCCCCCTCCCTCAGCAACGAGCCGCACGGACTGGCGTCCTGGGGCGAA
TCCTCCCCCCTCACGGACTACAATCACTACTACGAGAGGCTCATCAACCG
CCTCGCCCGCAAGTTCCCGGATTGGAAGGTACGCCCGCTCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCGAACCAGACCAATAAGGAAACATCCTCACC
CTCCCTCCCTTCCTCCCACCCTCCCTCCCACCCTCCCTCCCTCCCTCCCC
CCTATCCAGGGCCTCTGGCTAGTGGAAGGCACTCAGTACAATAATGAGGG
GTATGAGCCTCCTGTGCCGCAATGGTGGGGAGGTGCGTGTCAGGCGGGGG
AGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGAAGAGGAAAGAGGT
GGGAGCAACACCTGGACCAAGTTGATAGGTTTACATGGCTTCCTCACCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCAGGTAACCTGGAGGGGGCCAAGCAGTGGCCCATCAAGCTTGACACAGC
CGCCGCTGGTACGTCTCCCTTCCTTCCTCCCTCCTCTCCTCCCTCCGCAT
CCCCTCTATTCACATCAATCCCCTGCCCTCCGCCCTCCGCCCTTCCGCCC
TCCAGATGCGCGCCTGGTGTACGCTCCCCACATTTATGGCCCATCGGTCT
ACGAACACGGCTACATGAAGGAGCCTGACTTTCCCAACAATCTCCCCGCC
GTACGTGCCCTGCCTCCCTCCCTCCCTTCCTCCCCCCCTTCCTTCCTCCC
TCCCTCCCCCTCGACACAAACACCCTCTTATCCTTCCTTCCTTTCTCTTT
CTTCCACCCTTATTGCCTCCCTCCCCATCGACACACATCACCCTCTTGAC
CTTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCAGATCTGGGAAAAAATGT
ACGGCTTTATCATTCCCGACTTGAAGAAAGGCGTCATCATCGGCGAGTGG
GGCGGCTCCTGCATCGGTACGGCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
TCCCTGCTTTTCCCTCTCTCTGTCTCTCTCTATCGCCCAGGATCGTCACA
ATGACACTTTTCTCCCTCATCCCCACCTTCCTTCAACTTCCCCTCCCTCC
CTCCCGCCCGCCCTCCCCCCTCCCTCCCTCCAAGCTCAGCGAGTGGCCCA
AGCAGAAGGACATGGCTAACATCACCGTTCACCCCTCCCTCCCCTCCTCC
CTCCCTCCCTCCTCCAGGCAAAGACCAGGTGGTGCAGTACAAGCTCGGTG
AGTGGCTCAGGCAGAAGTGCATGGCCAATAACGTCTGGTGGGCGCTCAAT
CCGGGTTCCGACGACACGGGCGGCCTCCTCAAGGTGTGTGTCCTCCCCCC
CTCCCTCCCTCCCTCCCTCCTTGATGAGCGCAGCTCGACACCGCGGAGGC
CCGTCATAGCACCCACACCCACCTACCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCAGCCCGATTGGTACACA
GTGGATTACGTCAAGATGAACCTCCTCGATATGGTCCAGCCCCACCCTAC
CCGGGTGCAATACGTCACCAAAGACCAGGTAGGCCCTCCCTCCCCCCCTT
CCTCCCTCCCTCCCTCCCTCCCTCTGTGCGTCCAGTGCTCCTGATCTCAG
CCATTCAACCATCCCCCTTCGCCCCCCCCCTTCCCTCTCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCTCAGATTTGCATGGACTGGGGCGCCTT
CAGCAACCCCAACTGCAAGCCCTAAACTGAGAGGCGCACCCA back to topCoding sequence (CDS) from alignment at chr13:995799..1000440- >NO13G03350.1 ID=NO13G03350.1|Name=NO13G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr13:995799..1000440- (Nannochloropsis oceanica) ATGGCAAGACTGTCTTCCTCCTCCGTCCTCCTCTCAGGTCTCCTGTTGAG CGCCATCCTTCTTGGCCATGTCTCTTCCGAGTCCACCGGCGCATTGCGAG GCGGGAACAGCACCACCACACGGGCCCTGGCGCCTGCGCAGTGTCTGGAC AAGGCCACGTTGGATTGGACTTCCTCACCCAACGGCGCTGTACTCTTGAA CGGGAAGCCTTTCCACATCAAGGGCATCTCGTGGTTCGGCCTGGAGAAGG GCGAGGAAATGCTGCACGGCCTCAACAAGCGGCCCATGGGCGACATTCTG GACTTTGTCAAGTCCAACTTCAATGTCATCCGTCTTCCCTTCTCCGTCAA ATTCGCGCTCTCGGACCAACGCTCCAAGAGACCCGACCCCTACATCGTGG GCTTCGGCCTCGAGGACCTGACCTCCTGGGAGGTGCTTGATAAGTTCATG GACGAGTGCGCCGAGCGCGGCCTCTTCGTCATGCTGGACCAGCACGACAT CGTGGGTGACAAGGCCGAGTTGTGGTATGAGGGCGTATACACGGAGGAGT ACAGCATTAAGGCCTGGGAGGTTATGTTCGAGCGTTACGGCAACCATTAC AACATGTTCGCGGCTGATCTCCGCAACGAGCCGCACGGACTGGCGTCCTG GGGCGAATCCTCCCCCCTCACGGACTACAATCACTACTACGAGAGGCTCA TCAACCGCCTCGCCCGCAAGTTCCCGGATTGGAAGGGCCTCTGGCTAGTG GAAGGCACTCAGTACAATAATGAGGGGTATGAGCCTCCTGTGCCGCAATG GTGGGGAGGTAACCTGGAGGGGGCCAAGCAGTGGCCCATCAAGCTTGACA CAGCCGCCGCTGATGCGCGCCTGGTGTACGCTCCCCACATTTATGGCCCA TCGGTCTACGAACACGGCTACATGAAGGAGCCTGACTTTCCCAACAATCT CCCCGCCATCTGGGAAAAAATGTACGGCTTTATCATTCCCGACTTGAAGA AAGGCGTCATCATCGGCGAGTGGGGCGGCTCCTGCATCGGCAAAGACCAG GTGGTGCAGTACAAGCTCGGTGAGTGGCTCAGGCAGAAGTGCATGGCCAA TAACGTCTGGTGGGCGCTCAATCCGGGTTCCGACGACACGGGCGGCCTCC TCAAGCCCGATTGGTACACAGTGGATTACGTCAAGATGAACCTCCTCGAT ATGGTCCAGCCCCACCCTACCCGGGTGCAATACGTCACCAAAGACCAGAT TTGCATGGACTGGGGCGCCTTCAGCAACCCCAACTGCAAGCCCTAA back to top
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