NO13G03330.1, NO13G03330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03330.1
Unique NameNO13G03330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr13:983881..987361 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:983881..987361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03330.1 vs.
Match: XP_005854006.1 (hypothetical protein NGA_0496200 [Nannochloropsis gaditana CCMP526]; EKU22355.1 hypothetical protein NGA_0496200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 196.8 bits (499), Expect = 1.300e-46
Identity = 89/115 (77.39%), Postives = 95/115 (82.61%), Query Frame = 0 
Query:  300 GMWVLITLMLNFKGHDDGKPSEPPAANGRYKCNAVPIDVWYLARTIDLLAELDHVDHHLYPRKAKRDSYMGIDVFYWTFLWPG-------------EKLGIFWDVRSDAKGRVVK 402
            G+W+ ITL LNFKGHDDGKPSEPPA +GRYKCNAVPI+ WYLA TIDLLAELDHVDHHLYPRKAKR SYMG+DVFYWTFLWPG             EKLGIFWDVRSDAKGR+ K
Sbjct:  286 GLWLFITLTLNFKGHDDGKPSEPPAPDGRYKCNAVPINQWYLAYTIDLLAELDHVDHHLYPRKAKRSSYMGMDVFYWTFLWPGGNKRREGGGQGGREKLGIFWDVRSDAKGRMAK 400
The following BLAST results are available for this feature:
BLAST of NO13G03330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854006.11.300e-4677.39hypothetical protein NGA_0496200 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03330NO13G03330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03330.1NO13G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03330.1.cds1NO13G03330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds2NO13G03330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds3NO13G03330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds4NO13G03330.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds5NO13G03330.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds6NO13G03330.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds7NO13G03330.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds8NO13G03330.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds9NO13G03330.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds10NO13G03330.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds11NO13G03330.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03330.1.cds12NO13G03330.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03330.1 ID=NO13G03330.1|Name=NO13G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
ATGTGCTACGTCCAGCAAGCAAAGGGGAACGAGACAGCAGCAGCAGGGGC
CGGCAGCACCCGTGTCCTGCGCTCTCGCTCTGCCGCGACGACAGGGGAAG
ACAAGCAGCGGCGACAGGGAGAAGGGGAAAGAGTAGCGATGCGTGTAACA
GGCGCGGGGGAGGGTTTGAGCCCGCGAGGAAGAGGAGGAGGAGGAGTGGG
AGGGGTAGAAGGATGGGATGGGGAGTTGGAGATGGAGGAGAAGACGGTGT
CATTCATGACGCAAGAGAAGGAAACCAACGCCTTCGACGAGGAGATCCGA
GCCACTGGCACGCCCGCCTACATGCTAACCCTCTTCCCCTACGTCGACAC
CATTAATTGGGCGATCAACTTTCCCATGTACTTGCTGTTTGTGGCCTGTG
TCTGCTACACTGTGACCCTTGCTGTCCAAGGCCACCCCTTCACTTGGCAA
GAAGTAACGTTTGCATTCTGTCACGCCTACTGGAGAGCAATCATGAGCTG
GGGCCTGCTGCACCGCCTCTTCTCGCATCAGGCCTGGGCCTGCTCTCGAT
TCACCACCTTTCTCCTCGGCTTGTTCAGTTGCACCGCCGCTCAACGCGGC
CCCCTCTGGTGGTCCTCGAAACACTGCAGGCATCACAAGTATTGTGAGAA
TGAAGGCCCATATCCCTTCTGTGACCCCCACTCCTACCACCGCATCAAAA
ACTTCTTCTATGCCTACCTAGGCTGGACCATCCATCCTTTTGAAAAGCGC
GTGGATTGGGCGTTCGTCCACCCCCACTACAAGACCTGGGAAATGGCGCT
TGTAGAAAGTTGCACTTGGCTCGTGCCCGCCCTTGAGATCCTTATTCGTT
ACTACATCTGGGACCTCAACAACGTCCTACTGCACATCAACTTCACGGGG
ATGTGGGTTTTGATTACCCTCATGCTTAATTTCAAGGGCCACGACGATGG
CAAGCCTTCCGAGCCGCCCGCTGCCAACGGTCGCTACAAGTGCAATGCCG
TTCCTATCGACGTCTGGTACCTGGCGCGCACCATCGACCTCCTGGCCGAG
CTGGATCACGTGGATCACCACCTTTACCCTCGAAAAGCAAAACGCGACAG
TTACATGGGCATCGACGTGTTCTACTGGACCTTTCTATGGCCAGGCGAGA
AGCTTGGGATTTTCTGGGACGTCCGTAGCGACGCCAAAGGCCGAGTGGTG
AAAAAGCAACTATAG
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protein sequence of NO13G03330.1

>NO13G03330.1-protein ID=NO13G03330.1-protein|Name=NO13G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MCYVQQAKGNETAAAGAGSTRVLRSRSAATTGEDKQRRQGEGERVAMRVT
GAGEGLSPRGRGGGGVGGVEGWDGELEMEEKTVSFMTQEKETNAFDEEIR
ATGTPAYMLTLFPYVDTINWAINFPMYLLFVACVCYTVTLAVQGHPFTWQ
EVTFAFCHAYWRAIMSWGLLHRLFSHQAWACSRFTTFLLGLFSCTAAQRG
PLWWSSKHCRHHKYCENEGPYPFCDPHSYHRIKNFFYAYLGWTIHPFEKR
VDWAFVHPHYKTWEMALVESCTWLVPALEILIRYYIWDLNNVLLHINFTG
MWVLITLMLNFKGHDDGKPSEPPAANGRYKCNAVPIDVWYLARTIDLLAE
LDHVDHHLYPRKAKRDSYMGIDVFYWTFLWPGEKLGIFWDVRSDAKGRVV
KKQL*
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mRNA from alignment at chr13:983881..987361-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03330.1 ID=NO13G03330.1|Name=NO13G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3481bp|location=Sequence derived from alignment at chr13:983881..987361- (Nannochloropsis oceanica)
ATGTGCTACGTCCAGCAAGCAAAGGGGAACGAGACAGCAGCAGCAGGGGC
CGGCAGCACCCGTGTCCTGCGCTCTCGCTCTGCCGCGACGACAGGGGAAG
ACAAGCAGCGGCGACAGGGAGAAGGGGAAAGAGTAGCGATGCGTGTAACA
GGCGCGGGGGAGGGTTTGAGCCCGCGAGGAAGAGGAGGAGGAGGAGTGGG
AGGGGTAGAAGGATGGGATGGGGAGTTGGAGATGGAGGAGAAGACGGTGT
CATTCATGACGCAAGAGAAGGTAACTAAGGAGGGTGAAGGGAAACAAATG
TGAAGAAGGGGAGCAGTTGATTTTGTCTACATTCAAATACCTTCATTCAT
ACCCTCAAGCGTTTACGTCGTATTAACCATTACTCACGCAATTTATGGAA
TCCTAGGAAACCAACGCCTTCGACGAGGAGATCCGAGCCACTGGCACGCC
CGCCTACATGCTAACCCTCTTCCCCTACGTCGACACCATTAATTGGGCGA
TCAACTTTCCCATGTACTTGCTGTTTGTGGCCTGTAAGGCGGGAGGGAGG
AGGGAGGGAGGGGTCGGATGCATATTCATACCTGCCTGTCGTTCCCTACC
CTCTTGATTCGGCTGTCACATTGCCTGCATCCTCGCTACCTGGGAGGAAA
AGATGGCGGGAGGGAGGATTGGAGGAAGGAAGTTGAAAAAGAAATGAAGA
GATTGTTCAACAGGGTAAGTCGCTCTCATGTACTCACCCGCCCTTCCCTC
CCTCCCTCCCCCTTGCCCTCCCCCCGCCCTCCCTCCCTCCCTCCAGGTGT
CTGCTACACTGTGACCCTTGCTGTCCAAGGCCACCCCTTCACTTGGCAAG
AAGTAACGTTTGCATTCTGTCACGCCTACTGGAGAGCAATCATGAGCTGG
GGCCTGCTGCACCGCCTCTTCTCGCATCAGGTACTACCCTCCCTCCCTCC
CTCCCTCCTTGCTCTTCTTCTTTTCTTTTCCTCCTGCCCTTGCGTATTCT
GCCTCGTTCACCCCCTCCCTTATAACCTCCCTATCGCCCCCCATCCTCGC
CCCGTGCAGGGCAAGGCCACAGCGGGGATGACCACCTCCCTTCCTATCTC
CCTCCCTCACCATCCCCCACCCTCCCTCCCTCCCCCTCTCCCTCCCTCCT
TCCCTCCCTCCCTGTCTCCCTTCCTCCAGGCCTGGGCCTGCTCTCGATTC
ACCACCTTTCTCCTCGGCTTGTTCAGTTGCACCGCCGCTCAACGCGGCCC
CCTCTGGTGGTCCTCGAAACACTGCAGGCATCACAAGGTACGCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGTGCAGTC
ACCACTATAAAAACGCCCCCCCTCTCTCCCTCCTTCTCTCCCTCCCTCCC
TTCCTCTCTCCCTCCCTCCATTCCTCCTCCAGTATTGTGAGAATGAAGGC
CCATATCCCTTCTGTGACCCCCACTCCTACCACCGCATCAAAAACTTCTT
CTATGCCTACCTAGGTACGTCCTCCCACCCTCCCTCTCTCCTTTCTTCAT
CCCTCGACACCTTCTTGACTCTTCTCCTTCGTCTTTCTTGAATCGTTCTT
GACGTTATCTTGAGTGCTTCTCGCTCACGAAATTCTTCTTCTCTCCCTCC
AACCCTGCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCTGG
ACCATCCATCCTTTTGAAAAGCGCGTGGATTGGGCGTTCGTCCACCCCCA
CTACAAGGCAAGAGAGGGGCCAAGGGAGGGAGGGAGGGGAGGATGAGCAA
GAAAACACAGAAAGAAAGATGGTATCTTCAATCAACTCATTGTCACATCA
CACTCCCCCTCTCTCTCCCTCCCTCCCCCCCTCCCTGCCTCCAGACCTGG
GAAATGGCGCTTGTAGAAAGTTGCACTTGGCTCGTGCCCGCCCTTGAGAT
CCTTATTCGTTACTACATCTGGGACCTCAACAACGGTGTGTTTTTTATGC
CTCCCTCCCTCCTTCCCTCCCTCCCTTCCTCCCTTCCTTTATGGCTTGCA
GACTGTTCGTCCTCACAATGGCCCTCCCCCGCCCTCCCTCCCTCTATCCC
TCTATCCTCTTTCCCCTCTTTCCTGTAGTCCTACTGCACATCAACTTCAC
GGTACGTCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCGTTATGGCC
CCCTGCACGCAAACCAGTCTCGTTGATTGAATGAAAGAGTATCTTGTTGA
CTCGTTTCAACCTCACTTTAATATCGCTCGTTTGACGTCCGTGTCTCACA
CTGCGTCCAACGTATAGGGGATGTGGGTTTTGATTACCCTCATGCTTAAT
TTCAAGGGCCACGACGATGGCAAGCCTTCCGAGCCGCCCGCTGCCAACGG
TCGCTACAAGGTGGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAG
GTAGGTGTACAGAAGCGGAGAGAATTGAATGTTGTGGGCATCGCATCATA
TTCTTAGTAACCATAACTCATTCCCTCCGTCCCTCCTCCGTCCCTCCCTC
CGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCG
TCCCTCCCTCCGTCCCTCCCTCCTTCCCTCAGTGCAATGCCGTTCCTATC
GACGTCTGGTACCTGGCGCGCACCATCGACCTCCTGGCCGAGCTGGATCA
CGTGGATCACCACCTTTACCCTCGGTACGTGCGTGTGTGCATGAGTACAG
GTGTATATGAGTATATGTGTATGGGCATGTAGATGCATAGGCTAGTCACA
GACATCCGTATACTGCTTCTCTCTCTCTTGTCCCCCCCCTCTCTCTCTTA
CGCACTTATTTGCTTCTTCTCTTTTCCTGTCTTCTCCTCTTTGCTTTTCA
TATCCTTCCACGTCTTGACACACCGTCCCTTCTTCGGCGTCGTATTGTTT
GTTCCCCCTACTTCCTTCTTCCTACCTCTTATCCCACCTTCCCGCTCGTC
TCCCTCCCTCCCCTTCTTCATGTCCCTTTCCTTCTTCTCTGTCCATTCCT
CCTCTCCTCTTCCTTCCGCACTCCTGACGTCCCTCTCCTCCCCTTTCCCT
CTTTCTGATGCTCCCCTCCACCACAGAAAAGCAAAACGCGACAGTTACAT
GGGCATCGACGTGTTCTACTGGACCTTTCTATGGCCAGGTTAGATGATTG
ATTGTGGCGATCGAGGGATGGAGGGAGGGAGGATTTTTAGCTGTTGTCTT
CCTGCCTTCCCGACAACCTTGAAACCTCCCCCCATTTTGCTTCGTTTCTC
CTTTTCCTTTCTCATTCGTCTCCAGTGCCGCTAAGTCACCCACTCACCTG
TCATTATCTCCCTCCCTCTATCCCTTCTTCCTTTCTTCCTTCCCTCCCTC
CCTCCTCCAGGCGAGAAGCTTGGGATTTTCTGGGACGTCCGTAGCGACGC
CAAAGGCCGAGTGGTGAAAAAGCAACTATAG
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Coding sequence (CDS) from alignment at chr13:983881..987361-

>NO13G03330.1 ID=NO13G03330.1|Name=NO13G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr13:983881..987361- (Nannochloropsis oceanica)
ATGTGCTACGTCCAGCAAGCAAAGGGGAACGAGACAGCAGCAGCAGGGGC
CGGCAGCACCCGTGTCCTGCGCTCTCGCTCTGCCGCGACGACAGGGGAAG
ACAAGCAGCGGCGACAGGGAGAAGGGGAAAGAGTAGCGATGCGTGTAACA
GGCGCGGGGGAGGGTTTGAGCCCGCGAGGAAGAGGAGGAGGAGGAGTGGG
AGGGGTAGAAGGATGGGATGGGGAGTTGGAGATGGAGGAGAAGACGGTGT
CATTCATGACGCAAGAGAAGGAAACCAACGCCTTCGACGAGGAGATCCGA
GCCACTGGCACGCCCGCCTACATGCTAACCCTCTTCCCCTACGTCGACAC
CATTAATTGGGCGATCAACTTTCCCATGTACTTGCTGTTTGTGGCCTGTG
TCTGCTACACTGTGACCCTTGCTGTCCAAGGCCACCCCTTCACTTGGCAA
GAAGTAACGTTTGCATTCTGTCACGCCTACTGGAGAGCAATCATGAGCTG
GGGCCTGCTGCACCGCCTCTTCTCGCATCAGGCCTGGGCCTGCTCTCGAT
TCACCACCTTTCTCCTCGGCTTGTTCAGTTGCACCGCCGCTCAACGCGGC
CCCCTCTGGTGGTCCTCGAAACACTGCAGGCATCACAAGTATTGTGAGAA
TGAAGGCCCATATCCCTTCTGTGACCCCCACTCCTACCACCGCATCAAAA
ACTTCTTCTATGCCTACCTAGGCTGGACCATCCATCCTTTTGAAAAGCGC
GTGGATTGGGCGTTCGTCCACCCCCACTACAAGACCTGGGAAATGGCGCT
TGTAGAAAGTTGCACTTGGCTCGTGCCCGCCCTTGAGATCCTTATTCGTT
ACTACATCTGGGACCTCAACAACGTCCTACTGCACATCAACTTCACGGGG
ATGTGGGTTTTGATTACCCTCATGCTTAATTTCAAGGGCCACGACGATGG
CAAGCCTTCCGAGCCGCCCGCTGCCAACGGTCGCTACAAGTGCAATGCCG
TTCCTATCGACGTCTGGTACCTGGCGCGCACCATCGACCTCCTGGCCGAG
CTGGATCACGTGGATCACCACCTTTACCCTCGAAAAGCAAAACGCGACAG
TTACATGGGCATCGACGTGTTCTACTGGACCTTTCTATGGCCAGGCGAGA
AGCTTGGGATTTTCTGGGACGTCCGTAGCGACGCCAAAGGCCGAGTGGTG
AAAAAGCAACTATAG
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Synonyms
Publications