NO13G03320.1, NO13G03320.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G03320.1
Unique Name	NO13G03320.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2193
Alignment location	chr13:980812..983004 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:980812..983004 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO13G03320.1 vs.
Match: XP_008903071.1 (hypothetical protein PPTG_10193 [Phytophthora parasitica INRA-310]; ETI50949.1 hypothetical protein F443_05579 [Phytophthora parasitica P1569]; ETK90845.1 hypothetical protein L915_05444 [Phytophthora parasitica]; ETL44256.1 hypothetical protein L916_05390 [Phytophthora parasitica]; ETL97423.1 hypothetical protein L917_05279 [Phytophthora parasitica]; ETM50580.1 hypothetical protein L914_05396 [Phytophthora parasitica]; ETN11254.1 hypothetical protein PPTG_10193 [Phytophthora parasitica INRA-310]; ETO79703.1 hypothetical protein F444_05630 [Phytophthora parasitica P1976]; ETP20716.1 hypothetical protein F441_05593 [Phytophthora parasitica CJ01A1]; ETP48659.1 hypothetical protein F442_05625 [Phytophthora parasitica P10297]; KUF64361.1 PNS1 protein [Phytophthora nicotianae]; KUF91149.1 IQ domain-containing protein G [Phytophthora nicotianae])

HSP 1 Score: 81.6 bits (200), Expect = 1.100e-11
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 0

Query:  597 FIRTHHPLALVHVAAYKKSFSTAARDVWTLLVAAGLDSILRTDALSHTLHALGTT-AGCLTALMSLLLFGASAGVGVAVVLPGALAYILVMTALEPLLATVNAAYVSFAETPALVSQTFPLIFHRLDRIAEVRNF 731
            FIRT+H  A VH+A Y K +  AA D W L+   G+++I+  D  S  L   G   AG ++AL +  L GAS+      ++   L Y  +  A + + A +   +V FAE P  +SQ  PLI+HR  R+AE+++F
Sbjct:  408 FIRTYHKYAFVHIAGYNKPYYVAAHDAWKLIEHHGVEAIVDDDLTSRILLFGGNGWAGVMSALTASALAGASSHATFFTLVAFTLCYTTISLATQVIAAVIKTLFVCFAENPGRLSQLHPLIYHRFVRLAELKSF 542

The following BLAST results are available for this feature:

BLAST of NO13G03320.1 vs.

BLAST of NO13G03320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_008903071.1	1.100e-11	37.04	hypothetical protein PPTG_10193 [Phytophthora para...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G03320	NO13G03320	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G03320.1	NO13G03320.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G03320.1.cds1	NO13G03320.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:980812..983004-
coding sequence from alignment at chr13:980812..983004-

mRNA sequence

>NO13G03320.1 ID=NO13G03320.1|Name=NO13G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp
ATGTGGCTATCGTCCTCCGCGGTGCCTCCTCCGCCTTCGGGCGCGGGCCA
TCACCACGACGACTATGCCCCTCTCCCTCTCCCTCCTCCCTCTCCCTCGG
GCCACCACAAGGAACTGCCCTTCTCCCACGACGGCGATGAGGAAACCATC
ACCGAGACTCTCTCTCCATATTGTTCGAACTCCCAACATGCAAATACTCC
CAACTCGTGTTCAAACTCTTCCCCTGCCGCCTCCTCCTCCTCTTCCCCCT
CCTCTTCCCCCTCCTCCTTCGTCCCCGGTGTGGGCATTATGAGCCTCCGT
CGACCCCTCGCGTATAAGGACCGAGGTTTCACCGCCGTCTTTGCCTTGCA
CGTCCTCACTTTGTTCCTCGTCCTGTCCACCGACAAAGAATTGTCTCCTC
CGTCTTCCTCTTTTTCCCCATCACCACAAACACAAGGCGAGCAACCACCA
ACGTATCACTTCTACCACACGGCCGCCCGTCTCCTCCTCTCCATCCTCGC
TGGAGCTGCTCTGGCCTATTTTTTCATTCTCCGTGCAGTTTTTTACAATA
AAAGTATCGGTGGTATTATCTCCCGCCGGCGACTGCTCCTCCATGCCTCC
CACTTCTCCCTCGCCTCTCAAACCGTCCTCCTCTTCGTCCTCCTCTACTC
CAATCCCTTTCCCCTACCCTTCCTCCTTCTCCTTCTCTTCCCTCTCTCCA
TCAGCCTTTGGCACGAGCAACGCTATTGGCGTCGACGTGTACAAGAACAA
GGAGAGTTCGTGGTTGTCCTGGGGGAAATGACCAGTGACATCCTCGCTCC
CTCCCTCCCCCTCTGTTATGCTAGCCGGGGGATTCTCTTCCTCCAAACCT
CCTTCCTCATACTATGGGCCATGGTCTTTGCCTCGGCCTTCTGCACCTCC
GTCACAGAACCCTCTTCTACCACTGCTGCTATTCCTGCTACTGCTGCTGC
TGCTGCCGCCACCAGGAGCAGAGGCACCCCGGCCTTCCTCCCCTTCGTCC
TCCTCCTCCTTAACCTTTATTGGACCTCCCACCTGCTCCGCAAGACACTC
CACGTCCTCCTCTCGGGCTCGGTGACCCGTTGGTTCTACAGTGCGCTCGA
GGGAGGGGGGGAAGAAGAGAGGGAGGGAGGGAGGGACCGAAGGAGGACGA
GAAGTAGCATCACCCAAGAAGCGGGAGGATTTGAATATGACCGGACCAAG
AACCCGTTTTATGATGACGATGATGATGATCATGAGGAGAAGGAGGAACA
GGGAGAGAATGACGTAGAAGGTGAGTTGCATAAGGGCTTTATGCTGTCGG
AGCAGCAGCAGCAGCAGGAGGTTCAGCCAGGAAGGAAAATCAGGCAGCGA
CGTGGTAGCCCCACAGGGATGACGGTTGACATTTACGGGGACGACGGGCC
TGACGAGGACAGCAGCGACAGCCCTCCCTCCCCCCCGCCCTTCTCCTCCT
CCAACTTGTCGGGGGAAGTCCTCCTGCATCACCTGGCCTGTGCCCTCAGC
GTGTCCTTGGGCTCTCTGTGCCAGGCCGCTTTTTGTTGCCCCCTGGCCCA
CGCGCTCTGGGCTTGGCAAGGCTACACGGTTTCCCACCAAGACTCGGACA
TGCACACCATGCCCACGGCGGTCAGCCACCGCCCGACCTCGCATTCTTTC
GTGCCGTCTGCTTCTTTGGCCTCGACCTTGCCCTCCCACGCGGCCTCGAG
ACAGCGTGGGGGAGGGGGAGGAAGAACTGCAGGCGGGAAGCTCCCCTCGT
CCTCCCCCTCGTCCTCCCCCTCCTCTTGCCCCTCCTCCTTCATCCGCACG
CACCACCCTCTCGCCCTCGTCCACGTGGCAGCCTACAAGAAATCTTTTTC
CACCGCCGCCCGCGACGTGTGGACCCTCCTCGTCGCTGCCGGCCTCGACT
CGATCCTCCGTACCGATGCTTTGTCACACACCCTCCACGCACTGGGCACC
ACAGCCGGGTGCTTGACCGCACTAATGTCCCTCCTCCTCTTTGGTGCTAG
TGCGGGGGTGGGAGTTGCCGTGGTCTTGCCCGGTGCCCTGGCGTACATCT
TGGTAATGACGGCCTTGGAACCCCTGCTCGCCACGGTTAATGCGGCTTAC
GTGAGCTTCGCGGAGACCCCGGCTTTGGTGTCGCAGACCTTCCCGTTGAT
CTTCCACCGCTTGGATCGCATTGCGGAGGTGCGAAATTTTTGA

protein sequence of NO13G03320.1

>NO13G03320.1-protein ID=NO13G03320.1-protein|Name=NO13G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=731bp
MWLSSSAVPPPPSGAGHHHDDYAPLPLPPPSPSGHHKELPFSHDGDEETI
TETLSPYCSNSQHANTPNSCSNSSPAASSSSSPSSSPSSFVPGVGIMSLR
RPLAYKDRGFTAVFALHVLTLFLVLSTDKELSPPSSSFSPSPQTQGEQPP
TYHFYHTAARLLLSILAGAALAYFFILRAVFYNKSIGGIISRRRLLLHAS
HFSLASQTVLLFVLLYSNPFPLPFLLLLLFPLSISLWHEQRYWRRRVQEQ
GEFVVVLGEMTSDILAPSLPLCYASRGILFLQTSFLILWAMVFASAFCTS
VTEPSSTTAAIPATAAAAAATRSRGTPAFLPFVLLLLNLYWTSHLLRKTL
HVLLSGSVTRWFYSALEGGGEEEREGGRDRRRTRSSITQEAGGFEYDRTK
NPFYDDDDDDHEEKEEQGENDVEGELHKGFMLSEQQQQQEVQPGRKIRQR
RGSPTGMTVDIYGDDGPDEDSSDSPPSPPPFSSSNLSGEVLLHHLACALS
VSLGSLCQAAFCCPLAHALWAWQGYTVSHQDSDMHTMPTAVSHRPTSHSF
VPSASLASTLPSHAASRQRGGGGGRTAGGKLPSSSPSSSPSSCPSSFIRT
HHPLALVHVAAYKKSFSTAARDVWTLLVAAGLDSILRTDALSHTLHALGT
TAGCLTALMSLLLFGASAGVGVAVVLPGALAYILVMTALEPLLATVNAAY
VSFAETPALVSQTFPLIFHRLDRIAEVRNF*

mRNA from alignment at chr13:980812..983004-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G03320.1 ID=NO13G03320.1|Name=NO13G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp|location=Sequence derived from alignment at chr13:980812..983004- (Nannochloropsis oceanica)
ATGTGGCTATCGTCCTCCGCGGTGCCTCCTCCGCCTTCGGGCGCGGGCCA
TCACCACGACGACTATGCCCCTCTCCCTCTCCCTCCTCCCTCTCCCTCGG
GCCACCACAAGGAACTGCCCTTCTCCCACGACGGCGATGAGGAAACCATC
ACCGAGACTCTCTCTCCATATTGTTCGAACTCCCAACATGCAAATACTCC
CAACTCGTGTTCAAACTCTTCCCCTGCCGCCTCCTCCTCCTCTTCCCCCT
CCTCTTCCCCCTCCTCCTTCGTCCCCGGTGTGGGCATTATGAGCCTCCGT
CGACCCCTCGCGTATAAGGACCGAGGTTTCACCGCCGTCTTTGCCTTGCA
CGTCCTCACTTTGTTCCTCGTCCTGTCCACCGACAAAGAATTGTCTCCTC
CGTCTTCCTCTTTTTCCCCATCACCACAAACACAAGGCGAGCAACCACCA
ACGTATCACTTCTACCACACGGCCGCCCGTCTCCTCCTCTCCATCCTCGC
TGGAGCTGCTCTGGCCTATTTTTTCATTCTCCGTGCAGTTTTTTACAATA
AAAGTATCGGTGGTATTATCTCCCGCCGGCGACTGCTCCTCCATGCCTCC
CACTTCTCCCTCGCCTCTCAAACCGTCCTCCTCTTCGTCCTCCTCTACTC
CAATCCCTTTCCCCTACCCTTCCTCCTTCTCCTTCTCTTCCCTCTCTCCA
TCAGCCTTTGGCACGAGCAACGCTATTGGCGTCGACGTGTACAAGAACAA
GGAGAGTTCGTGGTTGTCCTGGGGGAAATGACCAGTGACATCCTCGCTCC
CTCCCTCCCCCTCTGTTATGCTAGCCGGGGGATTCTCTTCCTCCAAACCT
CCTTCCTCATACTATGGGCCATGGTCTTTGCCTCGGCCTTCTGCACCTCC
GTCACAGAACCCTCTTCTACCACTGCTGCTATTCCTGCTACTGCTGCTGC
TGCTGCCGCCACCAGGAGCAGAGGCACCCCGGCCTTCCTCCCCTTCGTCC
TCCTCCTCCTTAACCTTTATTGGACCTCCCACCTGCTCCGCAAGACACTC
CACGTCCTCCTCTCGGGCTCGGTGACCCGTTGGTTCTACAGTGCGCTCGA
GGGAGGGGGGGAAGAAGAGAGGGAGGGAGGGAGGGACCGAAGGAGGACGA
GAAGTAGCATCACCCAAGAAGCGGGAGGATTTGAATATGACCGGACCAAG
AACCCGTTTTATGATGACGATGATGATGATCATGAGGAGAAGGAGGAACA
GGGAGAGAATGACGTAGAAGGTGAGTTGCATAAGGGCTTTATGCTGTCGG
AGCAGCAGCAGCAGCAGGAGGTTCAGCCAGGAAGGAAAATCAGGCAGCGA
CGTGGTAGCCCCACAGGGATGACGGTTGACATTTACGGGGACGACGGGCC
TGACGAGGACAGCAGCGACAGCCCTCCCTCCCCCCCGCCCTTCTCCTCCT
CCAACTTGTCGGGGGAAGTCCTCCTGCATCACCTGGCCTGTGCCCTCAGC
GTGTCCTTGGGCTCTCTGTGCCAGGCCGCTTTTTGTTGCCCCCTGGCCCA
CGCGCTCTGGGCTTGGCAAGGCTACACGGTTTCCCACCAAGACTCGGACA
TGCACACCATGCCCACGGCGGTCAGCCACCGCCCGACCTCGCATTCTTTC
GTGCCGTCTGCTTCTTTGGCCTCGACCTTGCCCTCCCACGCGGCCTCGAG
ACAGCGTGGGGGAGGGGGAGGAAGAACTGCAGGCGGGAAGCTCCCCTCGT
CCTCCCCCTCGTCCTCCCCCTCCTCTTGCCCCTCCTCCTTCATCCGCACG
CACCACCCTCTCGCCCTCGTCCACGTGGCAGCCTACAAGAAATCTTTTTC
CACCGCCGCCCGCGACGTGTGGACCCTCCTCGTCGCTGCCGGCCTCGACT
CGATCCTCCGTACCGATGCTTTGTCACACACCCTCCACGCACTGGGCACC
ACAGCCGGGTGCTTGACCGCACTAATGTCCCTCCTCCTCTTTGGTGCTAG
TGCGGGGGTGGGAGTTGCCGTGGTCTTGCCCGGTGCCCTGGCGTACATCT
TGGTAATGACGGCCTTGGAACCCCTGCTCGCCACGGTTAATGCGGCTTAC
GTGAGCTTCGCGGAGACCCCGGCTTTGGTGTCGCAGACCTTCCCGTTGAT
CTTCCACCGCTTGGATCGCATTGCGGAGGTGCGAAATTTTTGA

Coding sequence (CDS) from alignment at chr13:980812..983004-

>NO13G03320.1 ID=NO13G03320.1|Name=NO13G03320.1|organism=Nannochloropsis oceanica|type=CDS|length=2193bp|location=Sequence derived from alignment at chr13:980812..983004- (Nannochloropsis oceanica)
ATGTGGCTATCGTCCTCCGCGGTGCCTCCTCCGCCTTCGGGCGCGGGCCA
TCACCACGACGACTATGCCCCTCTCCCTCTCCCTCCTCCCTCTCCCTCGG
GCCACCACAAGGAACTGCCCTTCTCCCACGACGGCGATGAGGAAACCATC
ACCGAGACTCTCTCTCCATATTGTTCGAACTCCCAACATGCAAATACTCC
CAACTCGTGTTCAAACTCTTCCCCTGCCGCCTCCTCCTCCTCTTCCCCCT
CCTCTTCCCCCTCCTCCTTCGTCCCCGGTGTGGGCATTATGAGCCTCCGT
CGACCCCTCGCGTATAAGGACCGAGGTTTCACCGCCGTCTTTGCCTTGCA
CGTCCTCACTTTGTTCCTCGTCCTGTCCACCGACAAAGAATTGTCTCCTC
CGTCTTCCTCTTTTTCCCCATCACCACAAACACAAGGCGAGCAACCACCA
ACGTATCACTTCTACCACACGGCCGCCCGTCTCCTCCTCTCCATCCTCGC
TGGAGCTGCTCTGGCCTATTTTTTCATTCTCCGTGCAGTTTTTTACAATA
AAAGTATCGGTGGTATTATCTCCCGCCGGCGACTGCTCCTCCATGCCTCC
CACTTCTCCCTCGCCTCTCAAACCGTCCTCCTCTTCGTCCTCCTCTACTC
CAATCCCTTTCCCCTACCCTTCCTCCTTCTCCTTCTCTTCCCTCTCTCCA
TCAGCCTTTGGCACGAGCAACGCTATTGGCGTCGACGTGTACAAGAACAA
GGAGAGTTCGTGGTTGTCCTGGGGGAAATGACCAGTGACATCCTCGCTCC
CTCCCTCCCCCTCTGTTATGCTAGCCGGGGGATTCTCTTCCTCCAAACCT
CCTTCCTCATACTATGGGCCATGGTCTTTGCCTCGGCCTTCTGCACCTCC
GTCACAGAACCCTCTTCTACCACTGCTGCTATTCCTGCTACTGCTGCTGC
TGCTGCCGCCACCAGGAGCAGAGGCACCCCGGCCTTCCTCCCCTTCGTCC
TCCTCCTCCTTAACCTTTATTGGACCTCCCACCTGCTCCGCAAGACACTC
CACGTCCTCCTCTCGGGCTCGGTGACCCGTTGGTTCTACAGTGCGCTCGA
GGGAGGGGGGGAAGAAGAGAGGGAGGGAGGGAGGGACCGAAGGAGGACGA
GAAGTAGCATCACCCAAGAAGCGGGAGGATTTGAATATGACCGGACCAAG
AACCCGTTTTATGATGACGATGATGATGATCATGAGGAGAAGGAGGAACA
GGGAGAGAATGACGTAGAAGGTGAGTTGCATAAGGGCTTTATGCTGTCGG
AGCAGCAGCAGCAGCAGGAGGTTCAGCCAGGAAGGAAAATCAGGCAGCGA
CGTGGTAGCCCCACAGGGATGACGGTTGACATTTACGGGGACGACGGGCC
TGACGAGGACAGCAGCGACAGCCCTCCCTCCCCCCCGCCCTTCTCCTCCT
CCAACTTGTCGGGGGAAGTCCTCCTGCATCACCTGGCCTGTGCCCTCAGC
GTGTCCTTGGGCTCTCTGTGCCAGGCCGCTTTTTGTTGCCCCCTGGCCCA
CGCGCTCTGGGCTTGGCAAGGCTACACGGTTTCCCACCAAGACTCGGACA
TGCACACCATGCCCACGGCGGTCAGCCACCGCCCGACCTCGCATTCTTTC
GTGCCGTCTGCTTCTTTGGCCTCGACCTTGCCCTCCCACGCGGCCTCGAG
ACAGCGTGGGGGAGGGGGAGGAAGAACTGCAGGCGGGAAGCTCCCCTCGT
CCTCCCCCTCGTCCTCCCCCTCCTCTTGCCCCTCCTCCTTCATCCGCACG
CACCACCCTCTCGCCCTCGTCCACGTGGCAGCCTACAAGAAATCTTTTTC
CACCGCCGCCCGCGACGTGTGGACCCTCCTCGTCGCTGCCGGCCTCGACT
CGATCCTCCGTACCGATGCTTTGTCACACACCCTCCACGCACTGGGCACC
ACAGCCGGGTGCTTGACCGCACTAATGTCCCTCCTCCTCTTTGGTGCTAG
TGCGGGGGTGGGAGTTGCCGTGGTCTTGCCCGGTGCCCTGGCGTACATCT
TGGTAATGACGGCCTTGGAACCCCTGCTCGCCACGGTTAATGCGGCTTAC
GTGAGCTTCGCGGAGACCCCGGCTTTGGTGTCGCAGACCTTCCCGTTGAT
CTTCCACCGCTTGGATCGCATTGCGGAGGTGCGAAATTTTTGA

Synonyms

Publications