NO13G03250.1, NO13G03250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03250.1
Unique NameNO13G03250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2234
Alignment locationchr13:946851..950074 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:946851..950074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G03250.1 vs.
Match: EWM20740.1 (channel hemolysin iii family protein [Nannochloropsis gaditana])

HSP 1 Score: 330.5 bits (846), Expect = 5.900e-87
Identity = 161/195 (82.56%), Postives = 171/195 (87.69%), Query Frame = 0
Query:   56 TKGQQARSPLPTYAGALPEDPAEAARLRKLYPPYSDAELDEAKKSQLIPGEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAASLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLGLHEL 251
            T+    ++ +P+YAGA P DP E  RLR LYPPYSD ELDEAKK QLIPGEVLYCEGA+KP WRGVLHGWSL LVP +A+ LL KADTPTE LAASLFALCCL LFLSSW+YHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLAL +TRLYVL GSALVA WGMIQIFRLQKNLIYFVLTASVMG GLHEL
Sbjct:  164 TRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHEL 358          
The following BLAST results are available for this feature:
BLAST of NO13G03250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20740.15.900e-8782.56channel hemolysin iii family protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03250NO13G03250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03250.1NO13G03250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03250.1.cds1NO13G03250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03250.1.cds2NO13G03250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03250.1.cds3NO13G03250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03250.1.cds4NO13G03250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03250.1.cds5NO13G03250.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03250.1.cds6NO13G03250.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03250.1.cds7NO13G03250.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03250.1 ID=NO13G03250.1|Name=NO13G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp
ACAAAGACAGAGGGCGAATGTGCAAGACCGTATCCATGCCCACGGGCAAG
GACAGCTCGTCTCTTTATCCGGCTCCATCCCTTTCTGTCAGGAGGAACAG
CAGCAGCGGTAGCGATGGAAGCACGCGTCGTCGGCGGCAGCGGCGGGAGC
AGGGAGGAGGTGAGAGTGGAGTGGCGGAGATGACAAAAGGACAGCAGGCC
CGATCTCCCCTTCCCACCTATGCCGGTGCCTTGCCCGAAGACCCGGCCGA
GGCAGCCCGCCTGCGAAAACTCTACCCTCCCTACAGTGATGCCGAACTAG
ACGAGGCGAAAAAGTCACAACTAATTCCAGGAGAGGTCCTATATTGCGAA
GGTGCCATAAAGCCCTCCTGGCGCGGCGTCCTCCATGGATGGTCTCTTCT
CCTGGTTCCAGCCCTGGCTGTGGTACTACTGACCAAAGCGGACACTCCAA
CGGAAACCTTGGCCGCCTCCCTTTTTGCCCTCTGCTGCCTCCTCCTCTTC
CTTTCCTCCTGGTCCTATCACCGCGTGCATTGGACACCACGCTGGGAAGT
GTGGATGCAAAAACTGGATCACTGCATGATCTTCATCATGGTGTCAGGCA
ACGTCGCTCCCCTCTCCCTCCTGGCCCTGAACAAGACGCGGCTGTACGTG
CTGACGGGCAGTGCTCTAGTGGCAGCGTGGGGCATGATTCAGATTTTCCG
CCTCCAGAAGAATCTTATTTACTTTGTCCTTACGGCAAGTGTCATGGGAC
TTGGGCTGCATGAGTTGGTGGCCCACCTGACGTCCCTGGAGCTGACCCTC
ATCATCGCCTCCTGGTCTCAATACTTCCTGGGCATGCTCATCTATGCCCT
CGGCTGGCCACGTCTCTGGCCCAGGCATTTTTCTTCCCACGAGCTCATGC
ACGCCCTCATTGTCACCGCGGCCGGGACAGCTGCAGTGGTGACTTACTCC
TTACTGGCACGCTTCGACGTCTCACGATGCTTGTGGGCGCGGTAGAGACA
GCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCTTTTGCGATGGCCGCT
CCTTCGTCCTGGTCTGTGTCGGATCAAGCTTGACAATGGTCGTGAGGAGG
CGAGGCCTCATTCATCATCCTACGTGTGGAGGAATTTCGAGGTGTATGTG
TGTCTATGTGTGTGTGCGTTTGCTGTGTTCACGTTTGTGAGATGGCTGCA
GAATGAAAAAAAAGTCGTCCTGGTCCTGCTCAGTGTGAATTGAATGGGAG
CTGGGCTGGCGGTGAAGCCGGAGGGTGGTTGATCGCAGGATAACCTCAGA
AAGAAAGAAACAATTGGAATTCTCAGTCTATTCTAATGTGATTAATATTA
GACATCTCGGAAAATATTAGGGATCTCGGTCGTTTTTTGATTTTGGTTTG
GTACAGGTACGCAGGTGCACATGGGTATAATAGATAGATTAAGGTCGAGG
TGGACGAGCAGCCGAGGGAGAATGAAGAAGAGGATCAGAACGAAAAGGAG
ACGAGGGGCAGTGCACGGTTGTGCGTGTGAGTATGTGTGCTTGTCTGTGG
ATCTGCATGGGAGAGAGGCAAGACGTGAGTGCGTGCGCGCGTACCTGCGT
GTGGCTGTGGGTGTATGTATAAGCAAGAGAGAGGGGAAGAGAGGGAGAGA
GAGAGACAAAAGAGAGAAAAAGAGATTGAAAGACTAGAGAGGAAGGAGAA
CAGAAACTATAGGAAAGCAAACCGCAAAAGACGTAGGGTTCACATGACAT
TTCAAAAATAATAATAATAACGATTTAAACAAAGGCGAGAAAGGAGGCAC
AAGACTCAAGGTTGCATCATCGAGCCTTTGGAGCCCGCGCGGTGTTTTTT
AATTAGTCTATACATGGTTCTGGTGATTCTTTGTCGATGCATTAATTCAC
CAGGCCTTGCCTGTGGCTTTGAGGCTTCAATGTGGTCTTGATTTGGGGCA
TTTCGAGTGGGACGTTAATACCCGCCGATCCGCTTATTCTTTTTCTTTCT
ATGTGCACACTAGGTTAGGTAGATAAATGGGTGGCTGTCGAAATGCAAGG
ATTTACGGCTCTCTCACTCTCACTCTGTCCCTCCCTCTTTCCCTTCCCCC
CTCTCTGTCCTTCCCTCTACAATAACCAGAACTGTTTCAGCTCTCCACGG
GACACGATCAAGTGCCTGATGAGGGCGTGCGGAAGCCTCCATTCCTGGCT
CTCGATGTGGCCACGACTACCCCCCGTATCGCCC
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protein sequence of NO13G03250.1

>NO13G03250.1-protein ID=NO13G03250.1-protein|Name=NO13G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MCKTVSMPTGKDSSSLYPAPSLSVRRNSSSGSDGSTRRRRQRREQGGGES
GVAEMTKGQQARSPLPTYAGALPEDPAEAARLRKLYPPYSDAELDEAKKS
QLIPGEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAA
SLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLS
LLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLGLHEL
VAHLTSLELTLIIASWSQYFLGMLIYALGWPRLWPRHFSSHELMHALIVT
AAGTAAVVTYSLLARFDVSRCLWAR*
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mRNA from alignment at chr13:946851..950074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03250.1 ID=NO13G03250.1|Name=NO13G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=3224bp|location=Sequence derived from alignment at chr13:946851..950074- (Nannochloropsis oceanica)
ACAAAGACAGAGGGCGAATGTGCAAGACCGTATCCATGCCCACGGGCAAG GACAGCTCGTCTCTTTATCCGGCTCCATCCCTTTCTGTCAGGAGGAACAG CAGCAGCGGTAGCGATGGAAGCACGCGTCGTCGGCGGCAGCGGCGGGAGC AGGGAGGAGGTGAGAGTGGAGTGGCGGAGATGACAAAAGGACAGCAGGTA CGTGACGTAGGCAGGAAAAAGGGAGAGAAGTAAGACACAGGAGCTTCGAC GGACCTTCCCATCCACCCTTTCTCCTTCCCTCCCTCCCCAAGGCCCGATC TCCCCTTCCCACCTATGCCGGTGCCTTGCCCGAAGACCCGGCCGAGGCAG CCCGCCTGCGAAAACTCTACCCTCCCTACAGTGATGCCGAACTAGACGAG GCGAAAAAGTCACAACTAATTCCAGGAGAGGTCCTATATTGCGAAGGTGC CATAAAGCCCTCCTGGCGCGGCGTCCTCCATGGATGGTCTCTTCTCCTGG TTCCAGCCCTGGCTGTGGTACTACTGACCAAAGCGGACACTCCAACGGTA AACAAGGACGAAATAAATGATTAGAAGGGAGGAACTGGCAGGGGGTGGAA CGACAGAAGAACAAATGATCGGGTGACAAATGATTCACCTCCCTCCTTAC CTCCCTCCTACTTCCTCGCCCATCCCCTTCCTTGCGCCCCGCAGGAAACC TTGGCCGCCTCCCTTTTTGCCCTCTGCTGCCTCCTCCTCTTCCTTTCCTC CTGGTCCTATCACCGCGTGCATTGGACACCACGCTGGGAAGTGTGGATGC AAAAACTGGATCACTGCATGATCTTCATCATGGTGTCAGGTACATACACC AACGACCGTTTCCTCCCTTCCTCCGACTCCTCATCATTCCCTCCCTTCCT CGAAGGGCACATCCTCTCTCTTTCCCCATTGGCCCTGAACAAGATACAGC TGTGCATGTGTTTCTCACCTACCCTTCCTCCCCTCCTTCCTTCCCTCCCT CCCTCCCTTCCTCCCTCCCTCCGAGGCAACGTCGCTCCCCTCTCCCTCCT GGCCCTGAACAAGACGCGGCTGTACGTGCTGACGGGCAGTGCTCTAGTGG CAGCGTGGGGCATGATTCAGGTAGGTACAGAGGCACGGAAGCAGGAAGGG AGGGAGGGAGGGAGGACGGCCAAGGGGAGAATTGCTCTCTTCTGGGACAC GGGATGTGGGGGGGGGGGGGTTGGAAAGGAATGATATCTGAATACCAACT AATGTTGATTATGATCATCTCTTCTCTTCCTAGTGTGGCTCATGATTATC TTGTCTTACCCTCTACCATTGATTTATGATTATCTTATCTCCTCGTCTTA ATAGATTTTCCGCCTCCAGAAGAATCTTATTTACTTTGTCCTTACGGCAA GTGTCATGGGACTTGGGCTGCATGAGTTGGGTAGGGAAGGAGGGAGGGAG GGAGGGAGGGAGGGAGGGGGGAAGGGAGGGAGGGGGGAAGGGAAAAGAAA AAAGAGACGAAAATGGATAAGCAACGTGTGCGGGTCCTATTAACCGCACC TACATCCCTCCCTCCCTCCCTCCCTCCTATCCTCCCCAGTGGCCCACCTG ACGTCCCTGGAGCTGACCCTCATCATCGCCTCCTGGTCTCAATACTTCCT GGGCATGCTCATCTATGCCCTCGGTGTGTCTCCACCCTCCTGCCCTCCCG CTCTCCCTCCCTCCCTCTTTCCCTCCCCCCCCCATCCCTCACGCTTTCCT CCCCCTCTTGACGCGGCTCGCCTTTCTCAATTTGTCTTCCCTCCCTCCCT CCCTCCCTCCCTCCCTCTTTCCCTCCCTTTCTCTGCGGTTAGGCTGGCCA CGTCTCTGGCCCAGGCATTTTTCTTCCCACGAGCTCATGCACGCCCTCAT TGTCACCGCGGCCGGGACAGCTGCAGTGGTGACTTACTCCTTACTGGCAC GCTTCGACGTCTCACGATGCTTGTGGGCGCGGTAGAGACAGCCCTCCCTC TCTCCCTCCCTCCCTCCCTCCCTCTTTTGCGATGGCCGCTCCTTCGTCCT GGTCTGTGTCGGATCAAGCTTGACAATGGTCGTGAGGAGGCGAGGCCTCA TTCATCATCCTACGTGTGGAGGAATTTCGAGGTGTATGTGTGTCTATGTG TGTGTGCGTTTGCTGTGTTCACGTTTGTGAGATGGCTGCAGAATGAAAAA AAAGTCGTCCTGGTCCTGCTCAGTGTGAATTGAATGGGAGCTGGGCTGGC GGTGAAGCCGGAGGGTGGTTGATCGCAGGATAACCTCAGAAAGAAAGAAA CAATTGGAATTCTCAGTCTATTCTAATGTGATTAATATTAGACATCTCGG AAAATATTAGGGATCTCGGTCGTTTTTTGATTTTGGTTTGGTACAGGTAC GCAGGTGCACATGGGTATAATAGATAGATTAAGGTCGAGGTGGACGAGCA GCCGAGGGAGAATGAAGAAGAGGATCAGAACGAAAAGGAGACGAGGGGCA GTGCACGGTTGTGCGTGTGAGTATGTGTGCTTGTCTGTGGATCTGCATGG GAGAGAGGCAAGACGTGAGTGCGTGCGCGCGTACCTGCGTGTGGCTGTGG GTGTATGTATAAGCAAGAGAGAGGGGAAGAGAGGGAGAGAGAGAGACAAA AGAGAGAAAAAGAGATTGAAAGACTAGAGAGGAAGGAGAACAGAAACTAT AGGAAAGCAAACCGCAAAAGACGTAGGGTTCACATGACATTTCAAAAATA ATAATAATAACGATTTAAACAAAGGCGAGAAAGGAGGCACAAGACTCAAG GTTGCATCATCGAGCCTTTGGAGCCCGCGCGGTGTTTTTTAATTAGTCTA TACATGGTTCTGGTGATTCTTTGTCGATGCATTAATTCACCAGGCCTTGC CTGTGGCTTTGAGGCTTCAATGTGGTCTTGATTTGGGGCATTTCGAGTGG GACGTTAATACCCGCCGATCCGCTTATTCTTTTTCTTTCTATGTGCACAC TAGGTTAGGTAGATAAATGGGTGGCTGTCGAAATGCAAGGATTTACGGCT CTCTCACTCTCACTCTGTCCCTCCCTCTTTCCCTTCCCCCCTCTCTGTCC TTCCCTCTACAATAACCAGAACTGTTTCAGCTCTCCACGGGACACGATCA AGTGCCTGATGAGGGCGTGCGGAAGCCTCCATTCCTGGCTCTCGATGTGG CCACGACTACCCCCCGTATCGCCC
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Coding sequence (CDS) from alignment at chr13:946851..950074-

>NO13G03250.1 ID=NO13G03250.1|Name=NO13G03250.1|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at chr13:946851..950074- (Nannochloropsis oceanica)
ATGTGCAAGACCGTATCCATGCCCACGGGCAAGGACAGCTCGTCTCTTTA
TCCGGCTCCATCCCTTTCTGTCAGGAGGAACAGCAGCAGCGGTAGCGATG
GAAGCACGCGTCGTCGGCGGCAGCGGCGGGAGCAGGGAGGAGGTGAGAGT
GGAGTGGCGGAGATGACAAAAGGACAGCAGGCCCGATCTCCCCTTCCCAC
CTATGCCGGTGCCTTGCCCGAAGACCCGGCCGAGGCAGCCCGCCTGCGAA
AACTCTACCCTCCCTACAGTGATGCCGAACTAGACGAGGCGAAAAAGTCA
CAACTAATTCCAGGAGAGGTCCTATATTGCGAAGGTGCCATAAAGCCCTC
CTGGCGCGGCGTCCTCCATGGATGGTCTCTTCTCCTGGTTCCAGCCCTGG
CTGTGGTACTACTGACCAAAGCGGACACTCCAACGGAAACCTTGGCCGCC
TCCCTTTTTGCCCTCTGCTGCCTCCTCCTCTTCCTTTCCTCCTGGTCCTA
TCACCGCGTGCATTGGACACCACGCTGGGAAGTGTGGATGCAAAAACTGG
ATCACTGCATGATCTTCATCATGGTGTCAGGCAACGTCGCTCCCCTCTCC
CTCCTGGCCCTGAACAAGACGCGGCTGTACGTGCTGACGGGCAGTGCTCT
AGTGGCAGCGTGGGGCATGATTCAGATTTTCCGCCTCCAGAAGAATCTTA
TTTACTTTGTCCTTACGGCAAGTGTCATGGGACTTGGGCTGCATGAGTTG
GTGGCCCACCTGACGTCCCTGGAGCTGACCCTCATCATCGCCTCCTGGTC
TCAATACTTCCTGGGCATGCTCATCTATGCCCTCGGCTGGCCACGTCTCT
GGCCCAGGCATTTTTCTTCCCACGAGCTCATGCACGCCCTCATTGTCACC
GCGGCCGGGACAGCTGCAGTGGTGACTTACTCCTTACTGGCACGCTTCGA
CGTCTCACGATGCTTGTGGGCGCGGTAG
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Synonyms
Publications