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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:946851..950074 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03250.1 vs.
Match: EWM20740.1 (channel hemolysin iii family protein [Nannochloropsis gaditana]) HSP 1 Score: 330.5 bits (846), Expect = 5.900e-87 Identity = 161/195 (82.56%), Postives = 171/195 (87.69%), Query Frame = 0
Query: 56 TKGQQARSPLPTYAGALPEDPAEAARLRKLYPPYSDAELDEAKKSQLIPGEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAASLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLGLHEL 251
T+ ++ +P+YAGA P DP E RLR LYPPYSD ELDEAKK QLIPGEVLYCEGA+KP WRGVLHGWSL LVP +A+ LL KADTPTE LAASLFALCCL LFLSSW+YHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLAL +TRLYVL GSALVA WGMIQIFRLQKNLIYFVLTASVMG GLHEL
Sbjct: 164 TRVDTDKAKVPSYAGAFPSDPNEIVRLRSLYPPYSDTELDEAKKGQLIPGEVLYCEGAMKPCWRGVLHGWSLFLVPVIALALLAKADTPTEHLAASLFALCCLCLFLSSWAYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLSLLALQQTRLYVLAGSALVATWGMIQIFRLQKNLIYFVLTASVMGFGLHEL 358
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03250.1 ID=NO13G03250.1|Name=NO13G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp ACAAAGACAGAGGGCGAATGTGCAAGACCGTATCCATGCCCACGGGCAAG GACAGCTCGTCTCTTTATCCGGCTCCATCCCTTTCTGTCAGGAGGAACAG CAGCAGCGGTAGCGATGGAAGCACGCGTCGTCGGCGGCAGCGGCGGGAGC AGGGAGGAGGTGAGAGTGGAGTGGCGGAGATGACAAAAGGACAGCAGGCC CGATCTCCCCTTCCCACCTATGCCGGTGCCTTGCCCGAAGACCCGGCCGA GGCAGCCCGCCTGCGAAAACTCTACCCTCCCTACAGTGATGCCGAACTAG ACGAGGCGAAAAAGTCACAACTAATTCCAGGAGAGGTCCTATATTGCGAA GGTGCCATAAAGCCCTCCTGGCGCGGCGTCCTCCATGGATGGTCTCTTCT CCTGGTTCCAGCCCTGGCTGTGGTACTACTGACCAAAGCGGACACTCCAA CGGAAACCTTGGCCGCCTCCCTTTTTGCCCTCTGCTGCCTCCTCCTCTTC CTTTCCTCCTGGTCCTATCACCGCGTGCATTGGACACCACGCTGGGAAGT GTGGATGCAAAAACTGGATCACTGCATGATCTTCATCATGGTGTCAGGCA ACGTCGCTCCCCTCTCCCTCCTGGCCCTGAACAAGACGCGGCTGTACGTG CTGACGGGCAGTGCTCTAGTGGCAGCGTGGGGCATGATTCAGATTTTCCG CCTCCAGAAGAATCTTATTTACTTTGTCCTTACGGCAAGTGTCATGGGAC TTGGGCTGCATGAGTTGGTGGCCCACCTGACGTCCCTGGAGCTGACCCTC ATCATCGCCTCCTGGTCTCAATACTTCCTGGGCATGCTCATCTATGCCCT CGGCTGGCCACGTCTCTGGCCCAGGCATTTTTCTTCCCACGAGCTCATGC ACGCCCTCATTGTCACCGCGGCCGGGACAGCTGCAGTGGTGACTTACTCC TTACTGGCACGCTTCGACGTCTCACGATGCTTGTGGGCGCGGTAGAGACA GCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCTTTTGCGATGGCCGCT CCTTCGTCCTGGTCTGTGTCGGATCAAGCTTGACAATGGTCGTGAGGAGG CGAGGCCTCATTCATCATCCTACGTGTGGAGGAATTTCGAGGTGTATGTG TGTCTATGTGTGTGTGCGTTTGCTGTGTTCACGTTTGTGAGATGGCTGCA GAATGAAAAAAAAGTCGTCCTGGTCCTGCTCAGTGTGAATTGAATGGGAG CTGGGCTGGCGGTGAAGCCGGAGGGTGGTTGATCGCAGGATAACCTCAGA AAGAAAGAAACAATTGGAATTCTCAGTCTATTCTAATGTGATTAATATTA GACATCTCGGAAAATATTAGGGATCTCGGTCGTTTTTTGATTTTGGTTTG GTACAGGTACGCAGGTGCACATGGGTATAATAGATAGATTAAGGTCGAGG TGGACGAGCAGCCGAGGGAGAATGAAGAAGAGGATCAGAACGAAAAGGAG ACGAGGGGCAGTGCACGGTTGTGCGTGTGAGTATGTGTGCTTGTCTGTGG ATCTGCATGGGAGAGAGGCAAGACGTGAGTGCGTGCGCGCGTACCTGCGT GTGGCTGTGGGTGTATGTATAAGCAAGAGAGAGGGGAAGAGAGGGAGAGA GAGAGACAAAAGAGAGAAAAAGAGATTGAAAGACTAGAGAGGAAGGAGAA CAGAAACTATAGGAAAGCAAACCGCAAAAGACGTAGGGTTCACATGACAT TTCAAAAATAATAATAATAACGATTTAAACAAAGGCGAGAAAGGAGGCAC AAGACTCAAGGTTGCATCATCGAGCCTTTGGAGCCCGCGCGGTGTTTTTT AATTAGTCTATACATGGTTCTGGTGATTCTTTGTCGATGCATTAATTCAC CAGGCCTTGCCTGTGGCTTTGAGGCTTCAATGTGGTCTTGATTTGGGGCA TTTCGAGTGGGACGTTAATACCCGCCGATCCGCTTATTCTTTTTCTTTCT ATGTGCACACTAGGTTAGGTAGATAAATGGGTGGCTGTCGAAATGCAAGG ATTTACGGCTCTCTCACTCTCACTCTGTCCCTCCCTCTTTCCCTTCCCCC CTCTCTGTCCTTCCCTCTACAATAACCAGAACTGTTTCAGCTCTCCACGG GACACGATCAAGTGCCTGATGAGGGCGTGCGGAAGCCTCCATTCCTGGCT CTCGATGTGGCCACGACTACCCCCCGTATCGCCC back to topprotein sequence of NO13G03250.1 >NO13G03250.1-protein ID=NO13G03250.1-protein|Name=NO13G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp MCKTVSMPTGKDSSSLYPAPSLSVRRNSSSGSDGSTRRRRQRREQGGGES GVAEMTKGQQARSPLPTYAGALPEDPAEAARLRKLYPPYSDAELDEAKKS QLIPGEVLYCEGAIKPSWRGVLHGWSLLLVPALAVVLLTKADTPTETLAA SLFALCCLLLFLSSWSYHRVHWTPRWEVWMQKLDHCMIFIMVSGNVAPLS LLALNKTRLYVLTGSALVAAWGMIQIFRLQKNLIYFVLTASVMGLGLHEL VAHLTSLELTLIIASWSQYFLGMLIYALGWPRLWPRHFSSHELMHALIVT AAGTAAVVTYSLLARFDVSRCLWAR* back to topmRNA from alignment at chr13:946851..950074- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03250.1 ID=NO13G03250.1|Name=NO13G03250.1|organism=Nannochloropsis oceanica|type=mRNA|length=3224bp|location=Sequence derived from alignment at chr13:946851..950074- (Nannochloropsis oceanica) ACAAAGACAGAGGGCGAATGTGCAAGACCGTATCCATGCCCACGGGCAAG
GACAGCTCGTCTCTTTATCCGGCTCCATCCCTTTCTGTCAGGAGGAACAG
CAGCAGCGGTAGCGATGGAAGCACGCGTCGTCGGCGGCAGCGGCGGGAGC
AGGGAGGAGGTGAGAGTGGAGTGGCGGAGATGACAAAAGGACAGCAGGTA
CGTGACGTAGGCAGGAAAAAGGGAGAGAAGTAAGACACAGGAGCTTCGAC
GGACCTTCCCATCCACCCTTTCTCCTTCCCTCCCTCCCCAAGGCCCGATC
TCCCCTTCCCACCTATGCCGGTGCCTTGCCCGAAGACCCGGCCGAGGCAG
CCCGCCTGCGAAAACTCTACCCTCCCTACAGTGATGCCGAACTAGACGAG
GCGAAAAAGTCACAACTAATTCCAGGAGAGGTCCTATATTGCGAAGGTGC
CATAAAGCCCTCCTGGCGCGGCGTCCTCCATGGATGGTCTCTTCTCCTGG
TTCCAGCCCTGGCTGTGGTACTACTGACCAAAGCGGACACTCCAACGGTA
AACAAGGACGAAATAAATGATTAGAAGGGAGGAACTGGCAGGGGGTGGAA
CGACAGAAGAACAAATGATCGGGTGACAAATGATTCACCTCCCTCCTTAC
CTCCCTCCTACTTCCTCGCCCATCCCCTTCCTTGCGCCCCGCAGGAAACC
TTGGCCGCCTCCCTTTTTGCCCTCTGCTGCCTCCTCCTCTTCCTTTCCTC
CTGGTCCTATCACCGCGTGCATTGGACACCACGCTGGGAAGTGTGGATGC
AAAAACTGGATCACTGCATGATCTTCATCATGGTGTCAGGTACATACACC
AACGACCGTTTCCTCCCTTCCTCCGACTCCTCATCATTCCCTCCCTTCCT
CGAAGGGCACATCCTCTCTCTTTCCCCATTGGCCCTGAACAAGATACAGC
TGTGCATGTGTTTCTCACCTACCCTTCCTCCCCTCCTTCCTTCCCTCCCT
CCCTCCCTTCCTCCCTCCCTCCGAGGCAACGTCGCTCCCCTCTCCCTCCT
GGCCCTGAACAAGACGCGGCTGTACGTGCTGACGGGCAGTGCTCTAGTGG
CAGCGTGGGGCATGATTCAGGTAGGTACAGAGGCACGGAAGCAGGAAGGG
AGGGAGGGAGGGAGGACGGCCAAGGGGAGAATTGCTCTCTTCTGGGACAC
GGGATGTGGGGGGGGGGGGGTTGGAAAGGAATGATATCTGAATACCAACT
AATGTTGATTATGATCATCTCTTCTCTTCCTAGTGTGGCTCATGATTATC
TTGTCTTACCCTCTACCATTGATTTATGATTATCTTATCTCCTCGTCTTA
ATAGATTTTCCGCCTCCAGAAGAATCTTATTTACTTTGTCCTTACGGCAA
GTGTCATGGGACTTGGGCTGCATGAGTTGGGTAGGGAAGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGGGGAAGGGAGGGAGGGGGGAAGGGAAAAGAAA
AAAGAGACGAAAATGGATAAGCAACGTGTGCGGGTCCTATTAACCGCACC
TACATCCCTCCCTCCCTCCCTCCCTCCTATCCTCCCCAGTGGCCCACCTG
ACGTCCCTGGAGCTGACCCTCATCATCGCCTCCTGGTCTCAATACTTCCT
GGGCATGCTCATCTATGCCCTCGGTGTGTCTCCACCCTCCTGCCCTCCCG
CTCTCCCTCCCTCCCTCTTTCCCTCCCCCCCCCATCCCTCACGCTTTCCT
CCCCCTCTTGACGCGGCTCGCCTTTCTCAATTTGTCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCTTTCCCTCCCTTTCTCTGCGGTTAGGCTGGCCA
CGTCTCTGGCCCAGGCATTTTTCTTCCCACGAGCTCATGCACGCCCTCAT
TGTCACCGCGGCCGGGACAGCTGCAGTGGTGACTTACTCCTTACTGGCAC
GCTTCGACGTCTCACGATGCTTGTGGGCGCGGTAGAGACAGCCCTCCCTC
TCTCCCTCCCTCCCTCCCTCCCTCTTTTGCGATGGCCGCTCCTTCGTCCT
GGTCTGTGTCGGATCAAGCTTGACAATGGTCGTGAGGAGGCGAGGCCTCA
TTCATCATCCTACGTGTGGAGGAATTTCGAGGTGTATGTGTGTCTATGTG
TGTGTGCGTTTGCTGTGTTCACGTTTGTGAGATGGCTGCAGAATGAAAAA
AAAGTCGTCCTGGTCCTGCTCAGTGTGAATTGAATGGGAGCTGGGCTGGC
GGTGAAGCCGGAGGGTGGTTGATCGCAGGATAACCTCAGAAAGAAAGAAA
CAATTGGAATTCTCAGTCTATTCTAATGTGATTAATATTAGACATCTCGG
AAAATATTAGGGATCTCGGTCGTTTTTTGATTTTGGTTTGGTACAGGTAC
GCAGGTGCACATGGGTATAATAGATAGATTAAGGTCGAGGTGGACGAGCA
GCCGAGGGAGAATGAAGAAGAGGATCAGAACGAAAAGGAGACGAGGGGCA
GTGCACGGTTGTGCGTGTGAGTATGTGTGCTTGTCTGTGGATCTGCATGG
GAGAGAGGCAAGACGTGAGTGCGTGCGCGCGTACCTGCGTGTGGCTGTGG
GTGTATGTATAAGCAAGAGAGAGGGGAAGAGAGGGAGAGAGAGAGACAAA
AGAGAGAAAAAGAGATTGAAAGACTAGAGAGGAAGGAGAACAGAAACTAT
AGGAAAGCAAACCGCAAAAGACGTAGGGTTCACATGACATTTCAAAAATA
ATAATAATAACGATTTAAACAAAGGCGAGAAAGGAGGCACAAGACTCAAG
GTTGCATCATCGAGCCTTTGGAGCCCGCGCGGTGTTTTTTAATTAGTCTA
TACATGGTTCTGGTGATTCTTTGTCGATGCATTAATTCACCAGGCCTTGC
CTGTGGCTTTGAGGCTTCAATGTGGTCTTGATTTGGGGCATTTCGAGTGG
GACGTTAATACCCGCCGATCCGCTTATTCTTTTTCTTTCTATGTGCACAC
TAGGTTAGGTAGATAAATGGGTGGCTGTCGAAATGCAAGGATTTACGGCT
CTCTCACTCTCACTCTGTCCCTCCCTCTTTCCCTTCCCCCCTCTCTGTCC
TTCCCTCTACAATAACCAGAACTGTTTCAGCTCTCCACGGGACACGATCA
AGTGCCTGATGAGGGCGTGCGGAAGCCTCCATTCCTGGCTCTCGATGTGG
CCACGACTACCCCCCGTATCGCCC back to topCoding sequence (CDS) from alignment at chr13:946851..950074- >NO13G03250.1 ID=NO13G03250.1|Name=NO13G03250.1|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at chr13:946851..950074- (Nannochloropsis oceanica) ATGTGCAAGACCGTATCCATGCCCACGGGCAAGGACAGCTCGTCTCTTTA TCCGGCTCCATCCCTTTCTGTCAGGAGGAACAGCAGCAGCGGTAGCGATG GAAGCACGCGTCGTCGGCGGCAGCGGCGGGAGCAGGGAGGAGGTGAGAGT GGAGTGGCGGAGATGACAAAAGGACAGCAGGCCCGATCTCCCCTTCCCAC CTATGCCGGTGCCTTGCCCGAAGACCCGGCCGAGGCAGCCCGCCTGCGAA AACTCTACCCTCCCTACAGTGATGCCGAACTAGACGAGGCGAAAAAGTCA CAACTAATTCCAGGAGAGGTCCTATATTGCGAAGGTGCCATAAAGCCCTC CTGGCGCGGCGTCCTCCATGGATGGTCTCTTCTCCTGGTTCCAGCCCTGG CTGTGGTACTACTGACCAAAGCGGACACTCCAACGGAAACCTTGGCCGCC TCCCTTTTTGCCCTCTGCTGCCTCCTCCTCTTCCTTTCCTCCTGGTCCTA TCACCGCGTGCATTGGACACCACGCTGGGAAGTGTGGATGCAAAAACTGG ATCACTGCATGATCTTCATCATGGTGTCAGGCAACGTCGCTCCCCTCTCC CTCCTGGCCCTGAACAAGACGCGGCTGTACGTGCTGACGGGCAGTGCTCT AGTGGCAGCGTGGGGCATGATTCAGATTTTCCGCCTCCAGAAGAATCTTA TTTACTTTGTCCTTACGGCAAGTGTCATGGGACTTGGGCTGCATGAGTTG GTGGCCCACCTGACGTCCCTGGAGCTGACCCTCATCATCGCCTCCTGGTC TCAATACTTCCTGGGCATGCTCATCTATGCCCTCGGCTGGCCACGTCTCT GGCCCAGGCATTTTTCTTCCCACGAGCTCATGCACGCCCTCATTGTCACC GCGGCCGGGACAGCTGCAGTGGTGACTTACTCCTTACTGGCACGCTTCGA CGTCTCACGATGCTTGTGGGCGCGGTAG back to top
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