NO13G03230.1, NO13G03230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03230.1
Unique NameNO13G03230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length929
Alignment locationchr13:942935..945115 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:942935..945115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03230.1 vs.
Match: EWM20745.1 (putative plastid-lipid-associated protein chloroplastic-like protein [Nannochloropsis gaditana])

HSP 1 Score: 315.1 bits (806), Expect = 1.500e-82
Identity = 152/194 (78.35%), Postives = 172/194 (88.66%), Query Frame = 0 
Query:    1 MLLSGFPPFSTATGSKKGLAQIKQLKKNLFDSLEGSDKGRVDKDGSKQRTINAILALAEANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCACRAVLQTTEQSERRLENIIEFDQNSALRIVSKLTPEATGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRRV 195
            MLLSGF P  T TGS+K   QIK+LKK LF+++EGSD+GRV+  G ++RTI AI ALA  NPTPNSATS LASGTWDLVWTTE+EIHLFRK+GLLGC C+AVLQTTEQS +RLENIIEF QNSALRI+SKL+PE +GPRVYFTWEDARVIYKGF LPFPSFFFV+NAYYDN+YLD E+RCV+DIRGNYLVVRRV
Sbjct:   71 MLLSGFFPAGT-TGSRKDSTQIKKLKKTLFETMEGSDRGRVNLGGGRERTIQAIQALAAVNPTPNSATSPLASGTWDLVWTTEEEIHLFRKQGLLGCTCQAVLQTTEQSTQRLENIIEFSQNSALRIISKLSPEPSGPRVYFTWEDARVIYKGFVLPFPSFFFVKNAYYDNIYLDSEIRCVRDIRGNYLVVRRV 263
The following BLAST results are available for this feature:
BLAST of NO13G03230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20745.11.500e-8278.35putative plastid-lipid-associated protein chloropl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03230NO13G03230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03230.1NO13G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03230.1.cds1NO13G03230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03230.1.cds2NO13G03230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03230.1.cds3NO13G03230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03230.1.cds4NO13G03230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03230.1.cds5NO13G03230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03230.1.cds6NO13G03230.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03230.1 ID=NO13G03230.1|Name=NO13G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=929bp
ACCTAGCCTATGCGTCACCCTCTATGTACAGTATACTGATTACCACATGC
ACAGTAACAGGCACAAGCGCGACAGGTAGGCAGGGAACCCTACTTAAAAG
CGTGCACATAGACAGAGTAATGGGTTGCTGCGAAGCATCGAGGGAGGAAA
GGGGGAGGGGGGAGGTCGGAGTTACAGAGCAAGGAGCACCCCCTTGGTGG
TACTGCCGCTGGTGCTGGTCGCGGCGCTATGGACCAAAATAGCAAGCGCC
TTTATCTCCTCCTCCCTCCCTTCCTCTTTCTTCTTTTCCCCCCCTCCGTC
CTCCACGTGCTCCACTGCGCCCACGATGTTGCTCTCGGGCTTTCCCCCCT
TCTCTACGGCGACTGGCAGCAAAAAGGGCCTGGCACAAATAAAACAGCTC
AAGAAGAATCTCTTCGACTCCCTCGAAGGCTCGGATAAGGGTCGGGTCGA
TAAGGATGGCAGCAAGCAACGCACCATCAACGCTATCCTAGCCCTGGCGG
AAGCCAATCCTACCCCCAACAGCGCCACCAGCGGTTTAGCCTCGGGCACA
TGGGACCTGGTGTGGACAACGGAAGATGAAATCCACCTCTTCAGGAAAAA
GGGTCTCCTGGGTTGTGCCTGTCGGGCGGTCCTCCAAACCACGGAGCAGT
CGGAGAGGAGGCTGGAAAACATCATTGAATTTGACCAAAACTCGGCTTTA
AGGATCGTCTCCAAGCTCACACCCGAGGCCACCGGTCCTCGTGTGTATTT
TACATGGGAGGACGCCCGCGTGATTTACAAGGGGTTCTCGCTGCCATTCC
CCTCGTTCTTCTTCGTCAGAAATGCCTACTACGATAATGTCTACTTAGAC
AAGGAACTGCGGTGCGTCAAAGACATTCGTGGAAACTACCTGGTGGTAAG
ACGAGTGTAGGGAGGGAGGGCGGGAGGGA
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protein sequence of NO13G03230.1

>NO13G03230.1-protein ID=NO13G03230.1-protein|Name=NO13G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MLLSGFPPFSTATGSKKGLAQIKQLKKNLFDSLEGSDKGRVDKDGSKQRT
INAILALAEANPTPNSATSGLASGTWDLVWTTEDEIHLFRKKGLLGCACR
AVLQTTEQSERRLENIIEFDQNSALRIVSKLTPEATGPRVYFTWEDARVI
YKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIRGNYLVVRRV*
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mRNA from alignment at chr13:942935..945115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03230.1 ID=NO13G03230.1|Name=NO13G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2181bp|location=Sequence derived from alignment at chr13:942935..945115- (Nannochloropsis oceanica)
ACCTAGCCTATGCGTCACCCTCTATGTACAGTATACTGATTACCACATGC
ACAGTAACAGGCACAAGCGCGACAGGTAGGCAGGGAACCCTACTTAAAAG
CGTGCACATAGACAGAGTAATGGGTTGCTGCGAAGCATCGAGGGAGGAAA
GGGGGAGGGGGGAGGTCGGAGTTACAGAGCAAGGAGCACCCCCTTGGTGG
TACTGCCGCTGGTGCTGGTCGCGGCGCTATGGACCAAAATAGTACGTGCG
GGTGAAAGAGAAGGAGGGAGGGCAAGTGAGCCTGCTCGAGACACAAGAGA
GAAATATGCAACCGGCGGAAAGGGAGGCATACTGTTTTAATGCATGCTTG
CTCCCCATTTATTATTTTTTCCACGCCTTTCCTCCTCTTCTCCATAGGCA
AGCGCCTTTATCTCCTCCTCCCTCCCTTCCTCTTTCTTCTTTTCCCCCCC
TCCGTCCTCCACGTGCTCCACTGCGCCCACGATGTTGCTCTCGGGCTTTC
CCCCCTTCTCTACGGCGACTGGCAGCAAAAAGGGCCTGGCACAAATAAAA
CAGCTCAAGAAGAATGTAGGTCATAAGCTGGAGGGAAGGAAGACCCACGC
CGCATAGACCTACACGTAACGCACAGAAAAAAAACTCCATCATGCATAAT
TATCACTATTATTATTCTCGAAACGAATAAATTAATAAACAAACATAACA
AACATAAACAAACAAACAAAAGAATCGTCCATTTCAATCCTTCCTCACCA
CCAATCTCAACCCCGCACTCGCAGCTCTTCGACTCCCTCGAAGGCTCGGA
TAAGGGTCGGGTCGATAAGGATGGCAGCAAGCAACGCACCATCAACGCTA
TCCTAGCCCTGGCGGAAGGTAAGTAAGAGCGATCCTCCTTCCCTTCCTTC
CTCCGTCCCTTGTCCCTCCTGTTCTCCAGGTATGGAAAATAAATCTCGAG
TTAGTCTGCATCCAGCCCACTCTCTACCTCTCCCTCCCTTCGAAGCCAAT
CCTACCCCCAACAGCGCCACCAGCGGTTTAGCCTCGGGCACATGGGACCT
GGTGTGGACAACGGAAGATGTGAGAACGGGAGGGAGGGAGAGAGGGGGTA
AGGCTGAGAAGGGCGTACAAGAGGAAGGAGAAATGGTGATATTTCCCTCC
TTTTATTCCCTCTTTCGTCCCTCCCTCCTCAAGAATCTACTTTTAGGTGG
TGCCTGCCAAGCCATCTTACAAGCCACATAGAGCACTCGATTTTAAAATC
AAATTTAAAATTCAATAATTCAAAAATAATTCAGAAGAGGCAACGAGAAG
TTAGACCACAGTTTCCTCAATATAAATATTCGTTCTTCTTTAAATCACTC
TCTCTCTTTCTGTTACCGCTCAGGAAATCCACCTCTTCAGGAAAAAGGGT
CTCCTGGGTTGTGCCTGTCGGGCGGTCCTCCAAACCACGGAGCAGTCGGA
GAGGAGGCTGGAAAACATCATTGAATTTGACCAAAACTCGGCTTTAAGGA
TCGTCTCCAAGCTCACACCCGAGGTAGGTGATTTGTAAGCACAGTCAGAT
TAGTTATACTGTTGTTCCAATATCAACGGTATGCCCGATGGTTGCTCGTG
GCGCTTCAAGAGCGTGTGGTAGGCTACTGCTTCGTATGCTTCCGGAGGTG
AGGGCGAAGGGTAGGCTGCCCTCCACATTTATCACCCACTGCGACTGGTA
TCTTGTGTCGACGTCTACAAGGGGGGAACAGACGCGCTGTCGGTTTTTCT
GTCGCCTCTCCAAACGTGCACCTTCAGACCTTCCCTCCTCCCCTCGCTTC
CTCCCTCCCTCCCTCCCTCGTTCCTTTAGGCCACCGGTCCTCGTGTGTAT
TTTACATGGGAGGACGCCCGCGTGATTTACAAGGGGTTCTCGCTGCCATT
CCCCTCGTTCTTCTTCGTCAGAAATGCCTAGTAAGATGGGGGTAAAAAGG
AGAAAGGGAGATAGGGAAGGGATAGAGAAAGGAAGGGAGACGGCAAACAA
AATGCCCACATTTGAAGCCTCCATTTTCTTGCGAATAGTCTCATTAAATC
CCTTCCCCCCCCTTTCCTCCTCACCTTCAGCTACGATAATGTCTACTTAG
ACAAGGAACTGCGGTGCGTCAAAGACATTCGTGGAAACTACCTGGTGGTA
AGACGAGTGTAGGGAGGGAGGGCGGGAGGGA
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Coding sequence (CDS) from alignment at chr13:942935..945115-

>NO13G03230.1 ID=NO13G03230.1|Name=NO13G03230.1|organism=Nannochloropsis oceanica|type=CDS|length=585bp|location=Sequence derived from alignment at chr13:942935..945115- (Nannochloropsis oceanica)
ATGTTGCTCTCGGGCTTTCCCCCCTTCTCTACGGCGACTGGCAGCAAAAA
GGGCCTGGCACAAATAAAACAGCTCAAGAAGAATCTCTTCGACTCCCTCG
AAGGCTCGGATAAGGGTCGGGTCGATAAGGATGGCAGCAAGCAACGCACC
ATCAACGCTATCCTAGCCCTGGCGGAAGCCAATCCTACCCCCAACAGCGC
CACCAGCGGTTTAGCCTCGGGCACATGGGACCTGGTGTGGACAACGGAAG
ATGAAATCCACCTCTTCAGGAAAAAGGGTCTCCTGGGTTGTGCCTGTCGG
GCGGTCCTCCAAACCACGGAGCAGTCGGAGAGGAGGCTGGAAAACATCAT
TGAATTTGACCAAAACTCGGCTTTAAGGATCGTCTCCAAGCTCACACCCG
AGGCCACCGGTCCTCGTGTGTATTTTACATGGGAGGACGCCCGCGTGATT
TACAAGGGGTTCTCGCTGCCATTCCCCTCGTTCTTCTTCGTCAGAAATGC
CTACTACGATAATGTCTACTTAGACAAGGAACTGCGGTGCGTCAAAGACA
TTCGTGGAAACTACCTGGTGGTAAGACGAGTGTAG
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Synonyms
Publications