NO13G03160.1, NO13G03160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03160.1
Unique NameNO13G03160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2520
Alignment locationchr13:917947..920672 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:917947..920672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G03160.1 vs.
Match: PIA31381.1 (hypothetical protein AQUCO_05000048v1 [Aquilegia coerulea])

HSP 1 Score: 80.5 bits (197), Expect = 7.600e-12
Identity = 60/204 (29.41%), Postives = 98/204 (48.04%), Query Frame = 0
Query:    4 IRSQCAITLDMAASVIAAFLLEGGATFHSSCKLARDIATGQPCGVTPNNDRGRIFLATRFILIDVIYILHRDNLEALDKAQRDLTAYKDPTLLRWFADLLLAVREGQAAPPPPTLGTPNATPSTPVG-NPPAPLHAPS-ARAKLQPIWLLDHVYGDFNDARNTTEKTLSDCAILTFKNKDVEALNDHAVQSFPGEEKTYLLSDR 206
            +RS+  I + +A+S IA+ LL GG T HS+ K+  ++     C VT       +F   + I+ D + + HR  +EA+D+  RD+   K+P     F  + + +               +   + P+G NP   +  PS  +     + LL  VY + N     TE  L + +IL+ +N DV  LN+ A+  FPGE   YL +D+
Sbjct:  100 LRSEGHIVIMVASSGIASLLLTGGRTAHSTFKIPFEVLDDSVCSVTKQTIHAELFKRAKLIIWDEVPMQHRFCVEAVDRTLRDIREIKEP-----FGGVTVVL-------------GGDFKQTLPIGTNPKEDVELPSEIKMCKSTMDLLFKVYPNLNVEEVATETYLHERSILSARNDDVATLNELAINHFPGELHEYLAADK 285          
The following BLAST results are available for this feature:
BLAST of NO13G03160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PIA31381.17.600e-1229.41hypothetical protein AQUCO_05000048v1 [Aquilegia c... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03160NO13G03160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03160.1NO13G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03160.1.cds1NO13G03160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03160.1.cds2NO13G03160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03160.1 ID=NO13G03160.1|Name=NO13G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2520bp
ATGAACCGGATCAGGTCCCAATGCGCCATCACTCTTGACATGGCCGCCTC
AGTCATCGCGGCGTTCCTTTTGGAGGGCGGGGCCACATTCCACTCCAGTT
GCAAGCTCGCACGGGACATTGCCACAGGGCAACCGTGCGGTGTCACACCC
AACAATGACAGGGGTCGCATATTCCTCGCCACCCGCTTCATCCTCATTGA
CGTGATCTACATACTGCACCGGGACAACCTCGAGGCCCTCGACAAAGCAC
AACGGGACCTTACGGCTTATAAGGATCCCACCCTCCTCCGATGGTTTGCA
GACCTCCTCCTCGCGGTAAGGGAAGGACAAGCAGCCCCACCCCCTCCAAC
TTTAGGCACCCCCAATGCCACCCCCTCCACCCCAGTCGGAAATCCTCCTG
CCCCCCTTCATGCACCCTCCGCCAGAGCTAAACTACAACCCATTTGGCTC
CTCGACCACGTCTACGGGGATTTCAATGACGCGCGCAATACAACGGAGAA
GACTCTAAGTGATTGTGCCATCCTCACCTTCAAGAACAAGGATGTAGAGG
CCTTGAATGACCACGCCGTCCAGTCTTTCCCCGGAGAAGAGAAAACGTAC
CTCTTATCAGACAGGCTGGCGCAGCACGGGAACGAGGGGAGGTGTCTTCC
CCACGGAGCTCTCGACTCGGACGTCGATGTGGGGTTGACATGATGTGACG
TTGACGATATTTGATGCGTCGAACTCATCAAACTCAACCCTGGCGCTCAG
CGAGTCTTTTACGTGCCGTCTTGTCCTTCCTTATTCACACAGAGGTCCCC
CTCCTCTGTCTCTTCATGATGGAAGACTTTATCCGACGCATGCGCGGACA
CGACCCGGCCGACTTACCACTATTCATTGGTCCTCCTACACTCATCCTCT
CCCCAACCCTACCTGCTGACGTCGTTTGGCTCCTCTCCTTTTTCCTCTTT
CCTGACACCGTTACCGGCATTGGTGACCTATTCCTCCAGAATTGAATGTT
CACAGGAGCTCCGCCCAACGGTGGGCGGAGCCAACGGTGGGCGGAGCTCC
GGCACATGCGATTCAACCCCAAGTCACATATCATGACTCTCCACTACAAA
TAGGGGAGACTCGACTTTGGGCCCTTCCACATTCCCCTCGACGAGTTCGA
CCTCAATTGGACTCTCCCCCAAGGCGGCTCCTTGTTATATGTGGGGATGA
ACCTCGAACCACCCCCCACCACGGCCCTGTTCGCACACGTCGTACTTTTA
TCCTCACCTAGAGACGAGGCATCTACTATCGGATGCATTGATCAACTCGA
AGTTTCGTGCACCTCTCAAGTCGGAAACTCCCAGAACCTCGCCTCATCGC
CATTAATGTCAAACAAGTGGTACACGCCGCTGTCCTCCACACCCGTAGTC
AACGTGGGATATACAGCCTTATATCGCATGATCTTCCTTGCGGTCCGTCG
ACTATAGGGGCTGCTCCATAACAAAAGCTCTAGCTTCCTAATGGACAACA
CACACAATATGGTCATACCACCTCCTCGCCCAAAAGCGCAAACTACACGT
TACGGCTGAATTCACAGACTCATGGTTCTATCCATGTGTGGTGAAACGTT
TCAGAAGCGCCTTCACATATTTTGCAACGTCATCCCTCCGTTGCATAATA
GGCACGTTGCGACTTTTCGGTAAGAGACTGAATGACCTTGAAACTCCAGA
GCTTGGAGGTGATAGAGACATCGACCGCAAGACACTCTGAAAAGAAGACG
TTAACATGGTCGCATGGAAAAAAGGTTTACTTCCCCTAATTTGCCGCAGA
CTGGCCTTCTACTGCTTCTCACGAGAATCCCATTATCGCCGAATCCTTGT
GACTATGCCTGAGCACACCCTTCCAATTCAAATCCGAATGACTGGTCTCC
ACGCAGCCATTGGACTACACTTTAAGCTATACATTTTCCGCACCCTCATG
GGAAAGAGCGTTCAGTTGACCTCTGGTGTCACACACCATATGCCGAATGT
GGTGTCCTCCTCACCACATGCCTTGCCATCCCACAGCTCTAGAGCACTGA
GCTTCTCGCTTGCCTAATTCTTATCGACGCAGAGGCCCACCCGGGAGCCC
CCGCAAACTCCTCTCCCAAAGGCCTTTCAGAGCCAGCCCGGGCAAAGACC
CTAGACTACCGAGATGCCTTCACTGGGAAGGCATGACCCGTCCCACGGCC
CTCAAGACCTGCATAATGCTTGCCGATCTCATGCATGGATACCGCGGCGC
ATGGTGCCCTAGTAATACCGTGCAGCATTAACCCGATAAGTGGAACTGCT
ATCCCGCCGCTCCATCCCCTGAACATCCCACCTCTTAAAGTAAGCTCACT
TACAAAGCAATAGGAATTTCATCACAATGGGTGGTGGCCCAAGCTCCCTC
CCCCCCACCCTAACCATGGTAAAGACTTCCCCACCTGACTCGTGAATGAT
TATTTTTGACCTGTTTCAAAATGTCGATAAATTAAGATGCTTAACCAAGG
TGAAATCACAAAAGTATCCC
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protein sequence of NO13G03160.1

>NO13G03160.1-protein ID=NO13G03160.1-protein|Name=NO13G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MNRIRSQCAITLDMAASVIAAFLLEGGATFHSSCKLARDIATGQPCGVTP
NNDRGRIFLATRFILIDVIYILHRDNLEALDKAQRDLTAYKDPTLLRWFA
DLLLAVREGQAAPPPPTLGTPNATPSTPVGNPPAPLHAPSARAKLQPIWL
LDHVYGDFNDARNTTEKTLSDCAILTFKNKDVEALNDHAVQSFPGEEKTY
LLSDRLAQHGNEGRCLPHGALDSDVDVGLT*
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mRNA from alignment at chr13:917947..920672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03160.1 ID=NO13G03160.1|Name=NO13G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2726bp|location=Sequence derived from alignment at chr13:917947..920672- (Nannochloropsis oceanica)
ATGAACCGGATCAGGTCCCAATGCGCCATCACTCTTGACATGGCCGCCTC AGTCATCGCGGCGTTCCTTTTGGAGGGCGGGGCCACATTCCACTCCAGTT GCAAGCTCGCACGGGACATTGCCACAGGGCAACCGTGCGGTGTCACACCC AACAATGACAGGGGTCGCATATTCCTCGCCACCCGCTTCATCCTCATTGA CGTGATCTACATACTGCACCGGGACAACCTCGAGGCCCTCGACAAAGCAC AACGGGACCTTACGGCTTATAAGGTACACCTGGACCTTGCACATGTTCTC TTTGGGGAGAAGGTCGTCGTTCTTTCGCAGATCTCCTTCAAATCCTCCCA GTGGTCCGAGACGACGACCAAAATGCTACCGTGTGCGCTTTCCTCATTTG CAGTCCTTTCTTGCAAAGTGTCCGTGCCCTTACCCTGGAGGAAAGCATGT GTATTTGTGCGGCGCACGACGCGGACCAGGATCCCACCCTCCTCCGATGG TTTGCAGACCTCCTCCTCGCGGTAAGGGAAGGACAAGCAGCCCCACCCCC TCCAACTTTAGGCACCCCCAATGCCACCCCCTCCACCCCAGTCGGAAATC CTCCTGCCCCCCTTCATGCACCCTCCGCCAGAGCTAAACTACAACCCATT TGGCTCCTCGACCACGTCTACGGGGATTTCAATGACGCGCGCAATACAAC GGAGAAGACTCTAAGTGATTGTGCCATCCTCACCTTCAAGAACAAGGATG TAGAGGCCTTGAATGACCACGCCGTCCAGTCTTTCCCCGGAGAAGAGAAA ACGTACCTCTTATCAGACAGGCTGGCGCAGCACGGGAACGAGGGGAGGTG TCTTCCCCACGGAGCTCTCGACTCGGACGTCGATGTGGGGTTGACATGAT GTGACGTTGACGATATTTGATGCGTCGAACTCATCAAACTCAACCCTGGC GCTCAGCGAGTCTTTTACGTGCCGTCTTGTCCTTCCTTATTCACACAGAG GTCCCCCTCCTCTGTCTCTTCATGATGGAAGACTTTATCCGACGCATGCG CGGACACGACCCGGCCGACTTACCACTATTCATTGGTCCTCCTACACTCA TCCTCTCCCCAACCCTACCTGCTGACGTCGTTTGGCTCCTCTCCTTTTTC CTCTTTCCTGACACCGTTACCGGCATTGGTGACCTATTCCTCCAGAATTG AATGTTCACAGGAGCTCCGCCCAACGGTGGGCGGAGCCAACGGTGGGCGG AGCTCCGGCACATGCGATTCAACCCCAAGTCACATATCATGACTCTCCAC TACAAATAGGGGAGACTCGACTTTGGGCCCTTCCACATTCCCCTCGACGA GTTCGACCTCAATTGGACTCTCCCCCAAGGCGGCTCCTTGTTATATGTGG GGATGAACCTCGAACCACCCCCCACCACGGCCCTGTTCGCACACGTCGTA CTTTTATCCTCACCTAGAGACGAGGCATCTACTATCGGATGCATTGATCA ACTCGAAGTTTCGTGCACCTCTCAAGTCGGAAACTCCCAGAACCTCGCCT CATCGCCATTAATGTCAAACAAGTGGTACACGCCGCTGTCCTCCACACCC GTAGTCAACGTGGGATATACAGCCTTATATCGCATGATCTTCCTTGCGGT CCGTCGACTATAGGGGCTGCTCCATAACAAAAGCTCTAGCTTCCTAATGG ACAACACACACAATATGGTCATACCACCTCCTCGCCCAAAAGCGCAAACT ACACGTTACGGCTGAATTCACAGACTCATGGTTCTATCCATGTGTGGTGA AACGTTTCAGAAGCGCCTTCACATATTTTGCAACGTCATCCCTCCGTTGC ATAATAGGCACGTTGCGACTTTTCGGTAAGAGACTGAATGACCTTGAAAC TCCAGAGCTTGGAGGTGATAGAGACATCGACCGCAAGACACTCTGAAAAG AAGACGTTAACATGGTCGCATGGAAAAAAGGTTTACTTCCCCTAATTTGC CGCAGACTGGCCTTCTACTGCTTCTCACGAGAATCCCATTATCGCCGAAT CCTTGTGACTATGCCTGAGCACACCCTTCCAATTCAAATCCGAATGACTG GTCTCCACGCAGCCATTGGACTACACTTTAAGCTATACATTTTCCGCACC CTCATGGGAAAGAGCGTTCAGTTGACCTCTGGTGTCACACACCATATGCC GAATGTGGTGTCCTCCTCACCACATGCCTTGCCATCCCACAGCTCTAGAG CACTGAGCTTCTCGCTTGCCTAATTCTTATCGACGCAGAGGCCCACCCGG GAGCCCCCGCAAACTCCTCTCCCAAAGGCCTTTCAGAGCCAGCCCGGGCA AAGACCCTAGACTACCGAGATGCCTTCACTGGGAAGGCATGACCCGTCCC ACGGCCCTCAAGACCTGCATAATGCTTGCCGATCTCATGCATGGATACCG CGGCGCATGGTGCCCTAGTAATACCGTGCAGCATTAACCCGATAAGTGGA ACTGCTATCCCGCCGCTCCATCCCCTGAACATCCCACCTCTTAAAGTAAG CTCACTTACAAAGCAATAGGAATTTCATCACAATGGGTGGTGGCCCAAGC TCCCTCCCCCCCACCCTAACCATGGTAAAGACTTCCCCACCTGACTCGTG AATGATTATTTTTGACCTGTTTCAAAATGTCGATAAATTAAGATGCTTAA CCAAGGTGAAATCACAAAAGTATCCC
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Coding sequence (CDS) from alignment at chr13:917947..920672-

>NO13G03160.1 ID=NO13G03160.1|Name=NO13G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr13:917947..920672- (Nannochloropsis oceanica)
ATGAACCGGATCAGGTCCCAATGCGCCATCACTCTTGACATGGCCGCCTC
AGTCATCGCGGCGTTCCTTTTGGAGGGCGGGGCCACATTCCACTCCAGTT
GCAAGCTCGCACGGGACATTGCCACAGGGCAACCGTGCGGTGTCACACCC
AACAATGACAGGGGTCGCATATTCCTCGCCACCCGCTTCATCCTCATTGA
CGTGATCTACATACTGCACCGGGACAACCTCGAGGCCCTCGACAAAGCAC
AACGGGACCTTACGGCTTATAAGGATCCCACCCTCCTCCGATGGTTTGCA
GACCTCCTCCTCGCGGTAAGGGAAGGACAAGCAGCCCCACCCCCTCCAAC
TTTAGGCACCCCCAATGCCACCCCCTCCACCCCAGTCGGAAATCCTCCTG
CCCCCCTTCATGCACCCTCCGCCAGAGCTAAACTACAACCCATTTGGCTC
CTCGACCACGTCTACGGGGATTTCAATGACGCGCGCAATACAACGGAGAA
GACTCTAAGTGATTGTGCCATCCTCACCTTCAAGAACAAGGATGTAGAGG
CCTTGAATGACCACGCCGTCCAGTCTTTCCCCGGAGAAGAGAAAACGTAC
CTCTTATCAGACAGGCTGGCGCAGCACGGGAACGAGGGGAGGTGTCTTCC
CCACGGAGCTCTCGACTCGGACGTCGATGTGGGGTTGACATGA
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Synonyms
Publications