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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:917947..920672 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03160.1 vs.
Match: PIA31381.1 (hypothetical protein AQUCO_05000048v1 [Aquilegia coerulea]) HSP 1 Score: 80.5 bits (197), Expect = 7.600e-12 Identity = 60/204 (29.41%), Postives = 98/204 (48.04%), Query Frame = 0
Query: 4 IRSQCAITLDMAASVIAAFLLEGGATFHSSCKLARDIATGQPCGVTPNNDRGRIFLATRFILIDVIYILHRDNLEALDKAQRDLTAYKDPTLLRWFADLLLAVREGQAAPPPPTLGTPNATPSTPVG-NPPAPLHAPS-ARAKLQPIWLLDHVYGDFNDARNTTEKTLSDCAILTFKNKDVEALNDHAVQSFPGEEKTYLLSDR 206
+RS+ I + +A+S IA+ LL GG T HS+ K+ ++ C VT +F + I+ D + + HR +EA+D+ RD+ K+P F + + + + + P+G NP + PS + + LL VY + N TE L + +IL+ +N DV LN+ A+ FPGE YL +D+
Sbjct: 100 LRSEGHIVIMVASSGIASLLLTGGRTAHSTFKIPFEVLDDSVCSVTKQTIHAELFKRAKLIIWDEVPMQHRFCVEAVDRTLRDIREIKEP-----FGGVTVVL-------------GGDFKQTLPIGTNPKEDVELPSEIKMCKSTMDLLFKVYPNLNVEEVATETYLHERSILSARNDDVATLNELAINHFPGELHEYLAADK 285
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03160.1 ID=NO13G03160.1|Name=NO13G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2520bp ATGAACCGGATCAGGTCCCAATGCGCCATCACTCTTGACATGGCCGCCTC AGTCATCGCGGCGTTCCTTTTGGAGGGCGGGGCCACATTCCACTCCAGTT GCAAGCTCGCACGGGACATTGCCACAGGGCAACCGTGCGGTGTCACACCC AACAATGACAGGGGTCGCATATTCCTCGCCACCCGCTTCATCCTCATTGA CGTGATCTACATACTGCACCGGGACAACCTCGAGGCCCTCGACAAAGCAC AACGGGACCTTACGGCTTATAAGGATCCCACCCTCCTCCGATGGTTTGCA GACCTCCTCCTCGCGGTAAGGGAAGGACAAGCAGCCCCACCCCCTCCAAC TTTAGGCACCCCCAATGCCACCCCCTCCACCCCAGTCGGAAATCCTCCTG CCCCCCTTCATGCACCCTCCGCCAGAGCTAAACTACAACCCATTTGGCTC CTCGACCACGTCTACGGGGATTTCAATGACGCGCGCAATACAACGGAGAA GACTCTAAGTGATTGTGCCATCCTCACCTTCAAGAACAAGGATGTAGAGG CCTTGAATGACCACGCCGTCCAGTCTTTCCCCGGAGAAGAGAAAACGTAC CTCTTATCAGACAGGCTGGCGCAGCACGGGAACGAGGGGAGGTGTCTTCC CCACGGAGCTCTCGACTCGGACGTCGATGTGGGGTTGACATGATGTGACG TTGACGATATTTGATGCGTCGAACTCATCAAACTCAACCCTGGCGCTCAG CGAGTCTTTTACGTGCCGTCTTGTCCTTCCTTATTCACACAGAGGTCCCC CTCCTCTGTCTCTTCATGATGGAAGACTTTATCCGACGCATGCGCGGACA CGACCCGGCCGACTTACCACTATTCATTGGTCCTCCTACACTCATCCTCT CCCCAACCCTACCTGCTGACGTCGTTTGGCTCCTCTCCTTTTTCCTCTTT CCTGACACCGTTACCGGCATTGGTGACCTATTCCTCCAGAATTGAATGTT CACAGGAGCTCCGCCCAACGGTGGGCGGAGCCAACGGTGGGCGGAGCTCC GGCACATGCGATTCAACCCCAAGTCACATATCATGACTCTCCACTACAAA TAGGGGAGACTCGACTTTGGGCCCTTCCACATTCCCCTCGACGAGTTCGA CCTCAATTGGACTCTCCCCCAAGGCGGCTCCTTGTTATATGTGGGGATGA ACCTCGAACCACCCCCCACCACGGCCCTGTTCGCACACGTCGTACTTTTA TCCTCACCTAGAGACGAGGCATCTACTATCGGATGCATTGATCAACTCGA AGTTTCGTGCACCTCTCAAGTCGGAAACTCCCAGAACCTCGCCTCATCGC CATTAATGTCAAACAAGTGGTACACGCCGCTGTCCTCCACACCCGTAGTC AACGTGGGATATACAGCCTTATATCGCATGATCTTCCTTGCGGTCCGTCG ACTATAGGGGCTGCTCCATAACAAAAGCTCTAGCTTCCTAATGGACAACA CACACAATATGGTCATACCACCTCCTCGCCCAAAAGCGCAAACTACACGT TACGGCTGAATTCACAGACTCATGGTTCTATCCATGTGTGGTGAAACGTT TCAGAAGCGCCTTCACATATTTTGCAACGTCATCCCTCCGTTGCATAATA GGCACGTTGCGACTTTTCGGTAAGAGACTGAATGACCTTGAAACTCCAGA GCTTGGAGGTGATAGAGACATCGACCGCAAGACACTCTGAAAAGAAGACG TTAACATGGTCGCATGGAAAAAAGGTTTACTTCCCCTAATTTGCCGCAGA CTGGCCTTCTACTGCTTCTCACGAGAATCCCATTATCGCCGAATCCTTGT GACTATGCCTGAGCACACCCTTCCAATTCAAATCCGAATGACTGGTCTCC ACGCAGCCATTGGACTACACTTTAAGCTATACATTTTCCGCACCCTCATG GGAAAGAGCGTTCAGTTGACCTCTGGTGTCACACACCATATGCCGAATGT GGTGTCCTCCTCACCACATGCCTTGCCATCCCACAGCTCTAGAGCACTGA GCTTCTCGCTTGCCTAATTCTTATCGACGCAGAGGCCCACCCGGGAGCCC CCGCAAACTCCTCTCCCAAAGGCCTTTCAGAGCCAGCCCGGGCAAAGACC CTAGACTACCGAGATGCCTTCACTGGGAAGGCATGACCCGTCCCACGGCC CTCAAGACCTGCATAATGCTTGCCGATCTCATGCATGGATACCGCGGCGC ATGGTGCCCTAGTAATACCGTGCAGCATTAACCCGATAAGTGGAACTGCT ATCCCGCCGCTCCATCCCCTGAACATCCCACCTCTTAAAGTAAGCTCACT TACAAAGCAATAGGAATTTCATCACAATGGGTGGTGGCCCAAGCTCCCTC CCCCCCACCCTAACCATGGTAAAGACTTCCCCACCTGACTCGTGAATGAT TATTTTTGACCTGTTTCAAAATGTCGATAAATTAAGATGCTTAACCAAGG TGAAATCACAAAAGTATCCC back to topprotein sequence of NO13G03160.1 >NO13G03160.1-protein ID=NO13G03160.1-protein|Name=NO13G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp MNRIRSQCAITLDMAASVIAAFLLEGGATFHSSCKLARDIATGQPCGVTP NNDRGRIFLATRFILIDVIYILHRDNLEALDKAQRDLTAYKDPTLLRWFA DLLLAVREGQAAPPPPTLGTPNATPSTPVGNPPAPLHAPSARAKLQPIWL LDHVYGDFNDARNTTEKTLSDCAILTFKNKDVEALNDHAVQSFPGEEKTY LLSDRLAQHGNEGRCLPHGALDSDVDVGLT* back to topmRNA from alignment at chr13:917947..920672- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03160.1 ID=NO13G03160.1|Name=NO13G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2726bp|location=Sequence derived from alignment at chr13:917947..920672- (Nannochloropsis oceanica) ATGAACCGGATCAGGTCCCAATGCGCCATCACTCTTGACATGGCCGCCTC
AGTCATCGCGGCGTTCCTTTTGGAGGGCGGGGCCACATTCCACTCCAGTT
GCAAGCTCGCACGGGACATTGCCACAGGGCAACCGTGCGGTGTCACACCC
AACAATGACAGGGGTCGCATATTCCTCGCCACCCGCTTCATCCTCATTGA
CGTGATCTACATACTGCACCGGGACAACCTCGAGGCCCTCGACAAAGCAC
AACGGGACCTTACGGCTTATAAGGTACACCTGGACCTTGCACATGTTCTC
TTTGGGGAGAAGGTCGTCGTTCTTTCGCAGATCTCCTTCAAATCCTCCCA
GTGGTCCGAGACGACGACCAAAATGCTACCGTGTGCGCTTTCCTCATTTG
CAGTCCTTTCTTGCAAAGTGTCCGTGCCCTTACCCTGGAGGAAAGCATGT
GTATTTGTGCGGCGCACGACGCGGACCAGGATCCCACCCTCCTCCGATGG
TTTGCAGACCTCCTCCTCGCGGTAAGGGAAGGACAAGCAGCCCCACCCCC
TCCAACTTTAGGCACCCCCAATGCCACCCCCTCCACCCCAGTCGGAAATC
CTCCTGCCCCCCTTCATGCACCCTCCGCCAGAGCTAAACTACAACCCATT
TGGCTCCTCGACCACGTCTACGGGGATTTCAATGACGCGCGCAATACAAC
GGAGAAGACTCTAAGTGATTGTGCCATCCTCACCTTCAAGAACAAGGATG
TAGAGGCCTTGAATGACCACGCCGTCCAGTCTTTCCCCGGAGAAGAGAAA
ACGTACCTCTTATCAGACAGGCTGGCGCAGCACGGGAACGAGGGGAGGTG
TCTTCCCCACGGAGCTCTCGACTCGGACGTCGATGTGGGGTTGACATGAT
GTGACGTTGACGATATTTGATGCGTCGAACTCATCAAACTCAACCCTGGC
GCTCAGCGAGTCTTTTACGTGCCGTCTTGTCCTTCCTTATTCACACAGAG
GTCCCCCTCCTCTGTCTCTTCATGATGGAAGACTTTATCCGACGCATGCG
CGGACACGACCCGGCCGACTTACCACTATTCATTGGTCCTCCTACACTCA
TCCTCTCCCCAACCCTACCTGCTGACGTCGTTTGGCTCCTCTCCTTTTTC
CTCTTTCCTGACACCGTTACCGGCATTGGTGACCTATTCCTCCAGAATTG
AATGTTCACAGGAGCTCCGCCCAACGGTGGGCGGAGCCAACGGTGGGCGG
AGCTCCGGCACATGCGATTCAACCCCAAGTCACATATCATGACTCTCCAC
TACAAATAGGGGAGACTCGACTTTGGGCCCTTCCACATTCCCCTCGACGA
GTTCGACCTCAATTGGACTCTCCCCCAAGGCGGCTCCTTGTTATATGTGG
GGATGAACCTCGAACCACCCCCCACCACGGCCCTGTTCGCACACGTCGTA
CTTTTATCCTCACCTAGAGACGAGGCATCTACTATCGGATGCATTGATCA
ACTCGAAGTTTCGTGCACCTCTCAAGTCGGAAACTCCCAGAACCTCGCCT
CATCGCCATTAATGTCAAACAAGTGGTACACGCCGCTGTCCTCCACACCC
GTAGTCAACGTGGGATATACAGCCTTATATCGCATGATCTTCCTTGCGGT
CCGTCGACTATAGGGGCTGCTCCATAACAAAAGCTCTAGCTTCCTAATGG
ACAACACACACAATATGGTCATACCACCTCCTCGCCCAAAAGCGCAAACT
ACACGTTACGGCTGAATTCACAGACTCATGGTTCTATCCATGTGTGGTGA
AACGTTTCAGAAGCGCCTTCACATATTTTGCAACGTCATCCCTCCGTTGC
ATAATAGGCACGTTGCGACTTTTCGGTAAGAGACTGAATGACCTTGAAAC
TCCAGAGCTTGGAGGTGATAGAGACATCGACCGCAAGACACTCTGAAAAG
AAGACGTTAACATGGTCGCATGGAAAAAAGGTTTACTTCCCCTAATTTGC
CGCAGACTGGCCTTCTACTGCTTCTCACGAGAATCCCATTATCGCCGAAT
CCTTGTGACTATGCCTGAGCACACCCTTCCAATTCAAATCCGAATGACTG
GTCTCCACGCAGCCATTGGACTACACTTTAAGCTATACATTTTCCGCACC
CTCATGGGAAAGAGCGTTCAGTTGACCTCTGGTGTCACACACCATATGCC
GAATGTGGTGTCCTCCTCACCACATGCCTTGCCATCCCACAGCTCTAGAG
CACTGAGCTTCTCGCTTGCCTAATTCTTATCGACGCAGAGGCCCACCCGG
GAGCCCCCGCAAACTCCTCTCCCAAAGGCCTTTCAGAGCCAGCCCGGGCA
AAGACCCTAGACTACCGAGATGCCTTCACTGGGAAGGCATGACCCGTCCC
ACGGCCCTCAAGACCTGCATAATGCTTGCCGATCTCATGCATGGATACCG
CGGCGCATGGTGCCCTAGTAATACCGTGCAGCATTAACCCGATAAGTGGA
ACTGCTATCCCGCCGCTCCATCCCCTGAACATCCCACCTCTTAAAGTAAG
CTCACTTACAAAGCAATAGGAATTTCATCACAATGGGTGGTGGCCCAAGC
TCCCTCCCCCCCACCCTAACCATGGTAAAGACTTCCCCACCTGACTCGTG
AATGATTATTTTTGACCTGTTTCAAAATGTCGATAAATTAAGATGCTTAA
CCAAGGTGAAATCACAAAAGTATCCC back to topCoding sequence (CDS) from alignment at chr13:917947..920672- >NO13G03160.1 ID=NO13G03160.1|Name=NO13G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr13:917947..920672- (Nannochloropsis oceanica) ATGAACCGGATCAGGTCCCAATGCGCCATCACTCTTGACATGGCCGCCTC AGTCATCGCGGCGTTCCTTTTGGAGGGCGGGGCCACATTCCACTCCAGTT GCAAGCTCGCACGGGACATTGCCACAGGGCAACCGTGCGGTGTCACACCC AACAATGACAGGGGTCGCATATTCCTCGCCACCCGCTTCATCCTCATTGA CGTGATCTACATACTGCACCGGGACAACCTCGAGGCCCTCGACAAAGCAC AACGGGACCTTACGGCTTATAAGGATCCCACCCTCCTCCGATGGTTTGCA GACCTCCTCCTCGCGGTAAGGGAAGGACAAGCAGCCCCACCCCCTCCAAC TTTAGGCACCCCCAATGCCACCCCCTCCACCCCAGTCGGAAATCCTCCTG CCCCCCTTCATGCACCCTCCGCCAGAGCTAAACTACAACCCATTTGGCTC CTCGACCACGTCTACGGGGATTTCAATGACGCGCGCAATACAACGGAGAA GACTCTAAGTGATTGTGCCATCCTCACCTTCAAGAACAAGGATGTAGAGG CCTTGAATGACCACGCCGTCCAGTCTTTCCCCGGAGAAGAGAAAACGTAC CTCTTATCAGACAGGCTGGCGCAGCACGGGAACGAGGGGAGGTGTCTTCC CCACGGAGCTCTCGACTCGGACGTCGATGTGGGGTTGACATGA back to top
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