NO13G03140.1, NO13G03140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03140.1
Unique NameNO13G03140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr13:902308..903999 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:902308..903999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03140.1 vs.
Match: CUU34429.1 (RNA polymerase primary sigma factor [Armatimonadetes bacterium DC]; CUU11479.1 RNA polymerase primary sigma factor [Armatimonadetes bacterium GBS]; CUU35320.1 RNA polymerase primary sigma factor [Armatimonadetes bacterium GXS]; GBC90222.1 RNA polymerase sigma factor SigA [bacterium HR14])

HSP 1 Score: 67.4 bits (163), Expect = 5.400e-8
Identity = 49/138 (35.51%), Postives = 73/138 (52.90%), Query Frame = 0 
Query:   10 RLKRQYEREGVEKEEEVLVLIAQELKCRVKKAALIERAA-RPLVYADSLGEYVDNHRCRLASEGEMVPTPLEYVSTMRLRGYIDDALHALDPVERDILRMLKGLDDGMRRTPAQVARLLEIKTKEVRQIEASALAKLQ 147
            RL++  +RE  ++E      IAQE    V++   I RA+  P+     +GE  +          ++VPTP +    M LR  I+  L  L P ERD++R+  GLDDG +RT  +V   L+I  + VRQ+E  AL KL+
Sbjct:  274 RLQQILQREPTDEE------IAQETGMSVERVREIRRASIEPISIESPVGERDNATLGEFIPSTDIVPTPEDVTRQMILREQIEMILQKLQPRERDVVRLRFGLDDGHQRTLEEVGAELKITRERVRQLELRALRKLR 405
The following BLAST results are available for this feature:
BLAST of NO13G03140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CUU34429.15.400e-835.51RNA polymerase primary sigma factor [Armatimonadet... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03140NO13G03140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03140.1NO13G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03140.1.cds1NO13G03140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03140.1.cds2NO13G03140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03140.1.cds3NO13G03140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03140.1.cds4NO13G03140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03140.1.cds5NO13G03140.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03140.1.cds6NO13G03140.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03140.1 ID=NO13G03140.1|Name=NO13G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATGGAAGCTTCATGTGCTTCGGTAAATCGTCTAAAGCGCCAATACGAGAG
GGAGGGTGTGGAGAAGGAAGAAGAGGTGCTGGTTTTAATTGCCCAAGAAC
TAAAATGCAGAGTCAAAAAGGCGGCGCTGATCGAACGTGCGGCCCGTCCG
TTGGTGTACGCGGACTCGCTGGGGGAGTACGTCGACAACCATCGTTGTCG
GCTGGCGTCGGAGGGAGAGATGGTTCCCACGCCTTTGGAGTACGTTTCCA
CCATGAGGCTGCGCGGCTACATTGACGATGCCCTGCATGCCCTGGACCCG
GTGGAGCGAGACATTCTACGGATGCTCAAAGGCCTTGATGACGGCATGAG
ACGTACCCCGGCCCAAGTCGCACGTCTCCTTGAGATTAAGACCAAAGAGG
TCCGTCAGATCGAGGCCTCCGCACTGGCTAAGCTACAACAGGCTCTCGCC
CCCGACATGGAAGACGTGTTGTCCTGCGCCCGGGCCGCGGACGACCGAGA
CAGGCAGGGGCTCTACACTGCTCCTTTCCAAGGGCGGGACCCCGTGCGGT
TCAGCTCTTACTAAACCTCCTCCTTTCCCACCCCCTTTCCTCGCTCCTCT
TCTCCCGGCCTCGCAATGAAGGGGAGGGATGGTTTGTGTTTGTGTATATA
TAGAAGGTATAGGACAGGAGAGCGGGGAGGGAGAGACAATTGTGAGGCGG
CGAGAGAGGGAGGATTTACATGACTACATGGGAGAAGAGATAGAGCGAAT
CATGAGAGTGAAGACATTAAGTCCAAAGGAAGGGAGGAGGAAGAGAAGAA
GACAGAGGTGAAGGAGGAAGAGCGAGAAAAAGAGGACATAAGATCGAAAT
GTAGTGCCAGTGAATAAATAAATAGATCAAACACCATGCGCCCCCAAAGA
AAAATGGAAACACAAACAACACGAAAAGAAAAAGAAAGAGGAAATGTAGG
AGAG
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protein sequence of NO13G03140.1

>NO13G03140.1-protein ID=NO13G03140.1-protein|Name=NO13G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MEASCASVNRLKRQYEREGVEKEEEVLVLIAQELKCRVKKAALIERAARP
LVYADSLGEYVDNHRCRLASEGEMVPTPLEYVSTMRLRGYIDDALHALDP
VERDILRMLKGLDDGMRRTPAQVARLLEIKTKEVRQIEASALAKLQQALA
PDMEDVLSCARAADDRDRQGLYTAPFQGRDPVRFSSY*
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mRNA from alignment at chr13:902308..903999+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03140.1 ID=NO13G03140.1|Name=NO13G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp|location=Sequence derived from alignment at chr13:902308..903999+ (Nannochloropsis oceanica)
ATGGAAGCTTCATGTGCTTCGGTCAGGCGCACGCCGACGTTGGCGTCTGG
ACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCCTCCATCCATCCCTCCCCCCTTCCCTCCAGGTAAATCGTCTAAAG
CGCCAATACGAGAGGGAGGGTGTGGAGAAGGAAGAAGAGGTGCTGGTTTT
AATTGCCCAAGAACTAAAATGCAGAGTCAAAAAGGCGGCGCTGGTGCGTA
TGCCTGCCCCCTTTCCCTCCCTCCCTCTATCCCTCCCTCCCTCTATCCCT
CCCGTCGTTCCCGCATGTGGATATGTACGGATTCTTTGGTAGTGATAGAG
GCACGTCGACCCTCCCCCTCTCCCTCCCTCCCTCCCTCCCTCAGATCGAA
CGTGCGGCCCGTCCGTTGGTGTACGCGGACTCGCTGGGGGAGTACGTCGA
CAACCATCGGTGAGGGAGGGAGGGAGGGAGGGAGGGAATTGAACAGGGAA
GGATATTATTACATTGACGGCGTTAGTTGGCTTACTTGTCTACCTATTTA
ATGTACCGCATTTGGATGTCAGCATTGGCTAATGTATTTTTGTAATTAAC
CTCATTCAGTTGTCGGCTGGCGTCGGAGGGAGAGATGGTTCCCACGCCTT
TGGAGTACGTTTCCACCATGAGGTAGGAAGGGAGGGAGGGAGGAGGGAAG
GGGGGAGGGGGGAGAAAAGAAGGGCCTGGACAAGCCTAGGGTCAGGTGGT
TGATACTGATACACAACCCTACTTTTCTGAAACCATCCCTCCCTCCCTCC
CTCCCTTCCTCCCTCCAGGCTGCGCGGCTACATTGACGATGCCCTGCATG
CCCTGGACCCGGTGGAGCGAGACATTCTACGGATGCTCAAAGGCCTTGAT
GACGGCATGAGACGTACCCCGGCCCAAGTCGCACGTCTCCTTGAGATTAA
GACCAAAGAGGTGCGTATGACGCCGGTCCTCACCCTCCCTCCCTCCCTTC
CTCCCTCCTTCCCTCGGAATGTAGACTCATTCCGTCCCTCCCTCCCTCCT
TTCCTCCCTCCTTCCCTCCCTCCCTGCCTCCCCGCAGGTCCGTCAGATCG
AGGCCTCCGCACTGGCTAAGCTACAACAGGCTCTCGCCCCCGACATGGAA
GACGTGTTGTCCTGCGCCCGGGCCGCGGACGACCGAGACAGGCAGGGGCT
CTACACTGCTCCTTTCCAAGGGCGGGACCCCGTGCGGTTCAGCTCTTACT
AAACCTCCTCCTTTCCCACCCCCTTTCCTCGCTCCTCTTCTCCCGGCCTC
GCAATGAAGGGGAGGGATGGTTTGTGTTTGTGTATATATAGAAGGTATAG
GACAGGAGAGCGGGGAGGGAGAGACAATTGTGAGGCGGCGAGAGAGGGAG
GATTTACATGACTACATGGGAGAAGAGATAGAGCGAATCATGAGAGTGAA
GACATTAAGTCCAAAGGAAGGGAGGAGGAAGAGAAGAAGACAGAGGTGAA
GGAGGAAGAGCGAGAAAAAGAGGACATAAGATCGAAATGTAGTGCCAGTG
AATAAATAAATAGATCAAACACCATGCGCCCCCAAAGAAAAATGGAAACA
CAAACAACACGAAAAGAAAAAGAAAGAGGAAATGTAGGAGAG
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Coding sequence (CDS) from alignment at chr13:902308..903999+

>NO13G03140.1 ID=NO13G03140.1|Name=NO13G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr13:902308..903999+ (Nannochloropsis oceanica)
ATGGAAGCTTCATGTGCTTCGGTAAATCGTCTAAAGCGCCAATACGAGAG
GGAGGGTGTGGAGAAGGAAGAAGAGGTGCTGGTTTTAATTGCCCAAGAAC
TAAAATGCAGAGTCAAAAAGGCGGCGCTGATCGAACGTGCGGCCCGTCCG
TTGGTGTACGCGGACTCGCTGGGGGAGTACGTCGACAACCATCGTTGTCG
GCTGGCGTCGGAGGGAGAGATGGTTCCCACGCCTTTGGAGTACGTTTCCA
CCATGAGGCTGCGCGGCTACATTGACGATGCCCTGCATGCCCTGGACCCG
GTGGAGCGAGACATTCTACGGATGCTCAAAGGCCTTGATGACGGCATGAG
ACGTACCCCGGCCCAAGTCGCACGTCTCCTTGAGATTAAGACCAAAGAGG
TCCGTCAGATCGAGGCCTCCGCACTGGCTAAGCTACAACAGGCTCTCGCC
CCCGACATGGAAGACGTGTTGTCCTGCGCCCGGGCCGCGGACGACCGAGA
CAGGCAGGGGCTCTACACTGCTCCTTTCCAAGGGCGGGACCCCGTGCGGT
TCAGCTCTTACTAA
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Synonyms
Publications