NO13G03110.1, NO13G03110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03110.1
Unique NameNO13G03110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1851
Alignment locationchr13:892492..894629 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:892492..894629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G03110.1 vs.
Match: XP_007046620.1 (PREDICTED: aquaporin PIP2-7 [Theobroma cacao]; EOX90777.1 Plasma membrane intrinsic protein 3 isoform 1 [Theobroma cacao])

HSP 1 Score: 168.7 bits (426), Expect = 3.400e-38
Identity = 91/233 (39.06%), Postives = 138/233 (59.23%), Query Frame = 0 
Query:  101 ELRDYRFHQALLAEWFGTTAFVFFLVLSIM--------TANADTVRIALVAGFTFFSIVYMLASVSGAHFNPAVTLGVWAARRITTLRFICYIIFQLLGGLTGAALARSVSTKMFRNVNGGANSVATGISKGSAFWVELLGTLFLVMAVLAALDTNINSRGT----LAPLEVALTIFLLHVVLLPFTGCSVNPARSFGTAVV---GRYWHLHWIWWVAPLVGGLFAALLYSII 319
            E+R + F++ALLAE+  T  F++ LV +++              + IA   G   F +VY  A +SG H NPAVTLG++ AR+++ +R + Y++ Q LG + GAA+A+S+  + +  + GGAN VA+G SKGSA   E++GT  LV  V +A D   N+R +    LAPL +   +F++H+  +P TG  +NPARS G AV+    + W   WI+WV P +G L AA  +  I
Sbjct:   30 EIRSWSFYRALLAEFVATLLFLYILVATVIGHKKQKGPCDGVGPLGIAWAVGGMIFVLVYCTAGISGGHINPAVTLGLFVARKVSLVRAVAYMVAQCLGSICGAAIAKSIMRRYYNTLGGGANEVASGYSKGSALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFVVHLATIPITGTGINPARSLGAAVIYDNEKAWDDQWIFWVGPFIGALAAAAYHQFI 262
The following BLAST results are available for this feature:
BLAST of NO13G03110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_007046620.13.400e-3839.06PREDICTED: aquaporin PIP2-7 [Theobroma cacao]; EOX... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03110NO13G03110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03110.1NO13G03110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03110.1.cds1NO13G03110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03110.1 ID=NO13G03110.1|Name=NO13G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp
GAATGGGGTTTAGAAACTAGTAAGGCATTTTTCCAAAATCTGTGTTGGGA
AACGGCTTCAACGGAAACCTCCCCCACACGACGGCCAGGCACGTTTCCTG
CTGGGGTCAGAAGTTTAGGAACGTGCGGCAGCCCAGCATTGTTGGCCTTG
TACAACTTCTCATTTTCTGTTGGCGGTGGTGTCAGTAACTTTCCCTCTTT
CTCAAACAACAATTATGCCCGCATTTCCACCATCTCAAATGCCCAATACA
TGTGCCAAAGCATCCTACTCCCGCTTATATCATTTTCACTCAATTTAATG
ACATCTACTCACTCTATGAATGTGAACCCCCCACATGCAGCAAAAGCAAT
CATTTTCTACTCCAACTCTTCCTCCTCCTCGTCGTTGCTTGAGTACCATA
CCCCACCGGGAAGGTACAGCTCACCTATGGACAGTACCGCATCCAGCAGG
CTCCAGCAGGAAGAAAAAGCAGAATACGGAACGTCAATAATGCAGGAAGG
CACGACTATCCTCGAGCCCCACAACTTCGACAAGGCTCCCATGGATGTCG
AACTTCGCGACTACCGCTTCCACCAAGCATTGCTCGCCGAATGGTTCGGG
ACCACGGCTTTTGTATTTTTTCTCGTCCTCTCCATCATGACAGCCAATGC
AGACACTGTACGGATCGCCCTTGTGGCTGGATTCACATTTTTTAGCATCG
TTTACATGCTTGCCAGCGTCTCCGGCGCCCACTTCAACCCCGCCGTCACC
CTCGGTGTGTGGGCTGCCCGTCGCATCACCACTCTACGCTTTATTTGCTA
CATTATCTTCCAGCTCCTTGGTGGCCTGACGGGCGCGGCTCTCGCTCGCA
GCGTCTCTACCAAGATGTTCCGCAATGTCAATGGAGGCGCAAACTCCGTC
GCCACAGGTATCTCCAAGGGCTCAGCGTTCTGGGTTGAACTTTTGGGGAC
TCTGTTTTTAGTAATGGCAGTTCTAGCGGCCCTGGACACGAACATCAATT
CTCGTGGCACACTTGCCCCGTTAGAAGTAGCATTGACGATCTTTTTGCTT
CACGTGGTCTTGCTCCCTTTTACCGGCTGTTCAGTCAATCCAGCACGGTC
CTTTGGCACGGCTGTGGTAGGAAGGTACTGGCACTTGCATTGGATTTGGT
GGGTCGCACCTTTGGTTGGTGGTCTGTTTGCGGCGTTACTGTATTCAATC
ATATTTTCATTTGGTCAGAGTCCCAAGGAGGAATTGAGCCACGAGGGGGT
GCTGGAGGGTGGGAGGGGAGGACTGGGTGGATTCCTCGGCAGGGGTCGTG
GGGAGCGACAGACGGGAACAGCGGATCGACCTCTGACGACAAGCGGGTAG
GTGTGTTCCACGGACAGCAGTTTCGATAAGAGCGGAAGGGTGGAAGAGAT
GGGAAGAAGCTATACGACGACGGAGAGAGGGCGTGGCACGATCAATGTAG
AGGAGGAAGGAGGAGAAGAAGCAGGAAGAGGAGGACAAGAAGCAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGCAGATGTTCCAAG
CATGGTTCCAGGACCAGAAGATTAAGTTTGACCATGGAATGACCTAATAA
TGGTATAGACAGGGAGAGAGGAAAAGAGGAAGGGATGGAGGCAGGGAGGG
AAGGGAGGAAAGACAAAATAGACTTGGATGCAGAAATTAACAAGGAAAAA
GACGGGATAAAGGGGAAAAAGACTATGACAAAGAATTAACCACAAAAAGC
CATACCAGGAAACAATAAAGAAAAAGAGTAGAAGGGAAGGTGGGTGAGAA
AAGAAAAGAAAAGTCAGAAAAGCAACCGAGAAACCACCACGTTCCAACGA
G
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protein sequence of NO13G03110.1

>NO13G03110.1-protein ID=NO13G03110.1-protein|Name=NO13G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MCQSILLPLISFSLNLMTSTHSMNVNPPHAAKAIIFYSNSSSSSSLLEYH
TPPGRYSSPMDSTASSRLQQEEKAEYGTSIMQEGTTILEPHNFDKAPMDV
ELRDYRFHQALLAEWFGTTAFVFFLVLSIMTANADTVRIALVAGFTFFSI
VYMLASVSGAHFNPAVTLGVWAARRITTLRFICYIIFQLLGGLTGAALAR
SVSTKMFRNVNGGANSVATGISKGSAFWVELLGTLFLVMAVLAALDTNIN
SRGTLAPLEVALTIFLLHVVLLPFTGCSVNPARSFGTAVVGRYWHLHWIW
WVAPLVGGLFAALLYSIIFSFGQSPKEELSHEGVLEGGRGGLGGFLGRGR
GERQTGTADRPLTTSG*
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mRNA from alignment at chr13:892492..894629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03110.1 ID=NO13G03110.1|Name=NO13G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2138bp|location=Sequence derived from alignment at chr13:892492..894629+ (Nannochloropsis oceanica)
GAATGGGGTTTAGAAACTAGTAAGGCATTTTTCCAAAATCTGTGTTGGGA
AACGGCTTCAACGGAAACCTCCCCCACACGACGGCCAGGCACGTTTCCTG
CTGGGGTCAGAAGTTTAGGAACGTGCGGCAGCCCAGCATTGTTGGCCTTG
TACAACTTCTCATTTTCTGTTGGCGGTGGTGTCAGTAACTTTCCCTCTTT
CTCAAACAACAATTATGCCCGCATTTCCACCATCTCAAATGCCCAATACA
TGTGCCAAAGCATCCTACTCCCGCTTATATCATTTTCACTCAATTTAATG
ACATCTACTCACTCTATGAATGTGAACCCCCCACATGCAGCAAAAGCAAT
CATTTTCTACTCCAACTCTTCCTCCTCCTCGTCGTTGCTTGAGTACCATA
CCCCACCGGGAAGGTACAGCTCACCTATGGACAGTACCGCATCCAGCAGG
CTCCAGCAGGAAGAAAAAGCAGAATACGGAACGTCAATAATGCAGGAAGG
CACGACTATCCTCGAGCCCCACAACTTCGACAAGGCTCCCATGGATGTCG
AACTTCGCGACTACCGCTTCCACCAAGCATTGCTCGCCGAATGGTTCGGG
ACCACGGCTTTTGTATTTTTTCTCGTCCTCTCCATCATGACAGCCAATGC
AGACACTGTACGGATCGCCCTTGTGGCTGGATTCACATTTTTTAGCATCG
TTTACATGCTTGCCAGCGTCTCCGGCGCCCACTTCAACCCCGCCGTCACC
CTCGGTGTGTGGGCTGCCCGTCGCATCACCACTCTACGCTTTATTTGCTA
CATTATCTTCCAGCTCCTTGGTGGCCTGACGGGCGCGGCTCTCGCTCGCA
GCGTCTCTACCAAGATGTTCCGCAATGTCAATGGAGGCGCAAACTCCGTC
GCCACAGGTATCTCCAAGGGCTCAGCGTTCTGGGTTGAACTTTTGGGGAC
TCTGTTTTTAGTAATGGCAGTTCTAGCGGCCCTGGACACGAACATCAATT
CTCGTGGCACACTTGCCCCGTTAGAAGTAGCATTGACGATCTTTTTGCTT
CACGTGGTCTTGCTCCCTTTTACCGGCTGTTCAGTCAATCCAGCACGGTC
CTTTGGCACGGCTGTGGTAGGAAGGTACTGGCACTTGCATTGGATTTGGT
GGGTCGCACCTTTGGTTGGTGGTCTGTTTGCGGCGTTACTGTATTCAATC
ATATTTTCATTTGGTCAGAGTCCCAAGGAGGAATTGAGCCACGAGGGGGT
GCTGGAGGGTGGGAGGGGAGGACTGGGTGGATTCCTCGGCAGGGGTCGTG
GGGAGCGACAGACGGGAACAGCGGATCGACCTCTGACGACAAGCGGGTAG
GTGTGGTACGTATCATGACGGGGGGGGAAATACGTGAGAACAGGTGGATA
CCTACTACACATCGTATTGGTAGTATTTTAATCGACCTTTACGCCTATGC
TCTCTGCTTTTTTAAAATGTATATAAATATAATGTATGCTTTCCTAAATA
GCGCGTGAATGGGAGAAGGATGACCACCGCCGAGAAAAAAGGGAAAGGAG
AGGTTGCAAAGGGATTGGTGCTATGCCGAGACGCGTCCCCTAGTAGAACA
GGCTGAACTGACCCCTTCCTCGTTATATCCCCCTCTATCTAGTTCCACGG
ACAGCAGTTTCGATAAGAGCGGAAGGGTGGAAGAGATGGGAAGAAGCTAT
ACGACGACGGAGAGAGGGCGTGGCACGATCAATGTAGAGGAGGAAGGAGG
AGAAGAAGCAGGAAGAGGAGGACAAGAAGCAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGAGGCAGATGTTCCAAGCATGGTTCCAGGA
CCAGAAGATTAAGTTTGACCATGGAATGACCTAATAATGGTATAGACAGG
GAGAGAGGAAAAGAGGAAGGGATGGAGGCAGGGAGGGAAGGGAGGAAAGA
CAAAATAGACTTGGATGCAGAAATTAACAAGGAAAAAGACGGGATAAAGG
GGAAAAAGACTATGACAAAGAATTAACCACAAAAAGCCATACCAGGAAAC
AATAAAGAAAAAGAGTAGAAGGGAAGGTGGGTGAGAAAAGAAAAGAAAAG
TCAGAAAAGCAACCGAGAAACCACCACGTTCCAACGAG
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Coding sequence (CDS) from alignment at chr13:892492..894629+

>NO13G03110.1 ID=NO13G03110.1|Name=NO13G03110.1|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at chr13:892492..894629+ (Nannochloropsis oceanica)
ATGTGCCAAAGCATCCTACTCCCGCTTATATCATTTTCACTCAATTTAAT
GACATCTACTCACTCTATGAATGTGAACCCCCCACATGCAGCAAAAGCAA
TCATTTTCTACTCCAACTCTTCCTCCTCCTCGTCGTTGCTTGAGTACCAT
ACCCCACCGGGAAGGTACAGCTCACCTATGGACAGTACCGCATCCAGCAG
GCTCCAGCAGGAAGAAAAAGCAGAATACGGAACGTCAATAATGCAGGAAG
GCACGACTATCCTCGAGCCCCACAACTTCGACAAGGCTCCCATGGATGTC
GAACTTCGCGACTACCGCTTCCACCAAGCATTGCTCGCCGAATGGTTCGG
GACCACGGCTTTTGTATTTTTTCTCGTCCTCTCCATCATGACAGCCAATG
CAGACACTGTACGGATCGCCCTTGTGGCTGGATTCACATTTTTTAGCATC
GTTTACATGCTTGCCAGCGTCTCCGGCGCCCACTTCAACCCCGCCGTCAC
CCTCGGTGTGTGGGCTGCCCGTCGCATCACCACTCTACGCTTTATTTGCT
ACATTATCTTCCAGCTCCTTGGTGGCCTGACGGGCGCGGCTCTCGCTCGC
AGCGTCTCTACCAAGATGTTCCGCAATGTCAATGGAGGCGCAAACTCCGT
CGCCACAGGTATCTCCAAGGGCTCAGCGTTCTGGGTTGAACTTTTGGGGA
CTCTGTTTTTAGTAATGGCAGTTCTAGCGGCCCTGGACACGAACATCAAT
TCTCGTGGCACACTTGCCCCGTTAGAAGTAGCATTGACGATCTTTTTGCT
TCACGTGGTCTTGCTCCCTTTTACCGGCTGTTCAGTCAATCCAGCACGGT
CCTTTGGCACGGCTGTGGTAGGAAGGTACTGGCACTTGCATTGGATTTGG
TGGGTCGCACCTTTGGTTGGTGGTCTGTTTGCGGCGTTACTGTATTCAAT
CATATTTTCATTTGGTCAGAGTCCCAAGGAGGAATTGAGCCACGAGGGGG
TGCTGGAGGGTGGGAGGGGAGGACTGGGTGGATTCCTCGGCAGGGGTCGT
GGGGAGCGACAGACGGGAACAGCGGATCGACCTCTGACGACAAGCGGGTA
G
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Synonyms
Publications