NO13G03010.1, NO13G03010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03010.1
Unique NameNO13G03010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1659
Alignment locationchr13:841627..843891 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:841627..843891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO13G03010.1 vs.
Match: EWM21970.1 (salt overly sensitive 1 [Nannochloropsis gaditana])

HSP 1 Score: 795.0 bits (2052), Expect = 1.400e-226
Identity = 417/521 (80.04%), Postives = 465/521 (89.25%), Query Frame = 0
Query:   17 SEGSKDVGMGTFVLALTLGILARAYLSSIVRLPYTCLVLLFGLAYGFILYTEVGMTGPDIFSNSTDLWINLPPEAILTVILPILIFGSSFSSDLHLFLQQLTPVLTLAGPAVLVGTTLLGVAAKYVLPYEWDWMTSFMVGSMWTATDPVAVVAILKTLGVAESLQILIDGESLLNDGVAIVLYSIFNRLVLDQNSFSAIETFEAAVILCLGGPAIGIVVGAVSSYVLGVILNDPASEITVTILCGYGSYLLADLAEASGVLSMVAAGLYLSFHGLGRISARVTASLSSFWAMASFIAETIIFFVSGLIMAEKALISSTIQGRDWGYLFLLYLIVNVARFLGVFLFFPTLARGPYGISWRQGVLLSWGGLRGAVSLTLSMAVSQQEEIPLETRARISFLTAGIVLLTILINGSTCKLLLRMLKLNNPTEAEQELFIRATNVMENELEEFLNLKLKKDKYLGSADWNVVYRYLPVLSPQIYWHRVREGHVRLNEGEIGLIGKYIQEEEKEEAAAAGEEGMVKE 538
            S+ S DVGMGTFVLAL LGI+ARA LSS+VRLPYTCLVL+FGL YGF++YTEVG+TG DIFS S DLWIN+ PEAILTVILPILIFGSSF+SDLHLFLQQLTPVLTLAGPAVLV   LLG+ AKYVLPY WDWMTS MVGSM +ATDPVAVVAILK LGV ESL ILIDGESLLNDG AIVLY+IF+RLV+ + + S +ET E+AVILCLGGPAIG+VVGA++SY+LGV+LNDPASEIT+TILCGYG+YLLA+LAEASGVLSMV AGLYLSFHGLGRISARVT SL SFWAMA+FI+ETIIFFVSGLIMAEKALIS T+QGRDWGYLFLLYLIVN  RF+GVFLFFPTLARGPYGI+WRQ VLLSWGGLRGAVSLTL++ VSQ+E IP ETRA I F TAGIVLLTILINGSTCKL+L+ LKLNNPT  EQEL+IRA N++ENELE  L LKLK DKYLG+ADWNVVYRYLPV SPQIYWHRVREGH+ L+E EI L+G+Y++EEE+E+    GEEG  KE
Sbjct:   11 SKFSHDVGMGTFVLALALGIVARACLSSLVRLPYTCLVLIFGLLYGFLIYTEVGITGSDIFSRSADLWINISPEAILTVILPILIFGSSFASDLHLFLQQLTPVLTLAGPAVLVNAALLGLTAKYVLPYNWDWMTSLMVGSMLSATDPVAVVAILKELGVVESLSILIDGESLLNDGFAIVLYTIFSRLVVHEETLSVLETVESAVILCLGGPAIGLVVGALTSYILGVLLNDPASEITMTILCGYGAYLLAELAEASGVLSMVVAGLYLSFHGLGRISARVTGSLKSFWAMAAFISETIIFFVSGLIMAEKALISETVQGRDWGYLFLLYLIVNATRFVGVFLFFPTLARGPYGINWRQAVLLSWGGLRGAVSLTLALVVSQEEGIPEETRALILFFTAGIVLLTILINGSTCKLVLQKLKLNNPTRVEQELYIRAMNLIENELEVSL-LKLKNDKYLGNADWNVVYRYLPVFSPQIYWHRVREGHICLDEAEIALVGRYVREEEEEK--EGGEEGGWKE 528          
The following BLAST results are available for this feature:
BLAST of NO13G03010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21970.11.400e-22680.04salt overly sensitive 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03010NO13G03010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03010.1NO13G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03010.1.cds1NO13G03010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03010.1.cds2NO13G03010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03010.1.cds3NO13G03010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03010.1 ID=NO13G03010.1|Name=NO13G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
ATGGCTGACACCGCCGAGACCGGCGCCCATTCTCCCCTCCAGCCCGACAG
TGAGGGTAGCAAAGATGTCGGCATGGGCACCTTCGTCCTCGCCCTCACCC
TCGGTATCCTTGCGAGGGCATATCTCTCCTCCATCGTCCGCCTCCCCTAC
ACCTGCCTAGTCCTCCTATTCGGCCTGGCGTATGGCTTCATCCTCTACAC
AGAAGTGGGAATGACAGGACCGGACATCTTCAGCAACAGCACTGACCTTT
GGATTAACCTTCCCCCCGAGGCTATCTTAACTGTCATTTTGCCTATCCTC
ATCTTCGGCTCCTCCTTTTCCAGCGACCTGCACCTTTTCCTCCAACAACT
CACCCCTGTCCTGACATTGGCAGGGCCTGCGGTGTTGGTAGGTACGACCC
TGTTAGGAGTGGCTGCGAAGTACGTGTTGCCCTATGAGTGGGATTGGATG
ACGAGCTTTATGGTGGGGTCGATGTGGACGGCCACTGACCCGGTTGCCGT
GGTGGCTATCCTCAAGACCCTCGGAGTCGCGGAAAGCTTGCAGATTTTGA
TCGATGGAGAGAGCCTTTTGAACGACGGGGTGGCCATCGTCTTGTACTCT
ATTTTCAACCGCTTAGTCCTGGATCAAAACAGTTTTTCAGCAATTGAGAC
ATTCGAGGCGGCGGTGATCTTGTGCTTGGGGGGACCGGCCATAGGTATCG
TGGTGGGGGCGGTTTCGAGTTACGTCCTGGGCGTTATTTTGAACGATCCG
GCGTCGGAAATCACAGTCACCATCCTCTGCGGCTATGGTTCCTATCTCCT
GGCCGACCTTGCGGAGGCCTCGGGCGTGCTGTCCATGGTGGCCGCTGGGC
TCTACCTCTCCTTCCACGGCCTGGGACGCATCTCCGCACGAGTCACCGCC
TCCTTGTCTTCCTTCTGGGCCATGGCCTCATTTATTGCCGAGACCATCAT
CTTCTTCGTCTCGGGACTGATCATGGCCGAAAAAGCGCTAATTTCCAGCA
CCATCCAAGGGCGCGATTGGGGATACTTGTTCCTCCTCTACCTCATCGTG
AACGTCGCTCGTTTCCTGGGCGTGTTTTTGTTCTTCCCAACACTGGCACG
TGGCCCCTATGGCATTTCGTGGAGGCAGGGAGTGCTCTTGTCTTGGGGGG
GGCTTCGGGGGGCGGTTAGTTTAACGCTCTCCATGGCCGTTTCTCAACAA
GAGGAAATTCCGTTGGAGACCCGCGCGCGGATTAGTTTCTTGACCGCGGG
GATTGTGTTGCTGACGATCTTAATCAATGGGAGTACGTGTAAGCTCCTGC
TACGGATGCTTAAGCTGAACAATCCCACAGAAGCGGAGCAAGAGCTCTTC
ATCCGTGCGACGAACGTGATGGAAAATGAACTGGAGGAATTTTTGAATTT
AAAATTGAAAAAAGACAAGTATTTGGGTAGCGCCGATTGGAACGTTGTGT
ACAGGTACCTCCCTGTGCTATCGCCTCAGATCTACTGGCATCGGGTGAGA
GAAGGCCATGTCAGATTGAATGAGGGGGAGATAGGATTAATAGGGAAATA
CATCCAGGAAGAGGAGAAGGAGGAGGCGGCGGCTGCAGGAGAGGAGGGGA
TGGTGAAGGAAGTGGGGATGGAGGAGGCGGAAGAAATGGGGAGGGGAGGG
AAACGGTGA
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protein sequence of NO13G03010.1

>NO13G03010.1-protein ID=NO13G03010.1-protein|Name=NO13G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MADTAETGAHSPLQPDSEGSKDVGMGTFVLALTLGILARAYLSSIVRLPY
TCLVLLFGLAYGFILYTEVGMTGPDIFSNSTDLWINLPPEAILTVILPIL
IFGSSFSSDLHLFLQQLTPVLTLAGPAVLVGTTLLGVAAKYVLPYEWDWM
TSFMVGSMWTATDPVAVVAILKTLGVAESLQILIDGESLLNDGVAIVLYS
IFNRLVLDQNSFSAIETFEAAVILCLGGPAIGIVVGAVSSYVLGVILNDP
ASEITVTILCGYGSYLLADLAEASGVLSMVAAGLYLSFHGLGRISARVTA
SLSSFWAMASFIAETIIFFVSGLIMAEKALISSTIQGRDWGYLFLLYLIV
NVARFLGVFLFFPTLARGPYGISWRQGVLLSWGGLRGAVSLTLSMAVSQQ
EEIPLETRARISFLTAGIVLLTILINGSTCKLLLRMLKLNNPTEAEQELF
IRATNVMENELEEFLNLKLKKDKYLGSADWNVVYRYLPVLSPQIYWHRVR
EGHVRLNEGEIGLIGKYIQEEEKEEAAAAGEEGMVKEVGMEEAEEMGRGG
KR*
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mRNA from alignment at chr13:841627..843891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03010.1 ID=NO13G03010.1|Name=NO13G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2265bp|location=Sequence derived from alignment at chr13:841627..843891- (Nannochloropsis oceanica)
ATGGCTGACACCGCCGAGACCGGCGCCCATTCTCCCCTCCAGCCCGACAG TGAGGGTAGCAAAGATGTCGGCATGGGCACCTTCGTCCTCGCCCTCACCC TCGGTATCCTTGCGAGGGCATATCTCTCCTCCATCGTCCGCCTCCCCTAC ACCTGCCTAGTCCTCCTATTCGGCCTGGCGTATGGCTTCATCCTCTACAC AGAAGTGGGAATGACAGGACCGGACATCTTCAGCAACAGCACTGACCTTT GGATTAACCTTCCCCCCGAGGCTATCTTAACTGTCATTTTGCCTATCCTC ATCTTCGGCTCCTCCTTTTCCAGCGACCTGCACCTTTTCCTCCAACAACT CACCCCTGTCCTGACATTGGCAGGGCCTGCGGTGTTGGTAGGTACGACCC TGTTAGGAGTGGCTGCGAAGTACGTGTTGCCCTATGAGTGGGATTGGATG ACGAGCTTTATGGTGGGGTCGATGTGGACGGCCACTGACCCGGTTGCCGT GGTGGCTATCCTCAAGACCCTCGGAGTCGCGGAAAGCTTGCAGATTTTGA TCGATGGAGAGAGCCTTTTGAACGACGGGGTGGCCATCGTCTTGTACTCT ATTTTCAACCGCTTAGTCCTGGATCAAAACAGTTTTTCAGCAATTGAGAC ATTCGAGGCGGCGGTGATCTTGTGCTTGGGGGGACCGGCCATAGGTATCG TGGTGGGGGCGGTTTCGAGTTACGTCCTGGGCGTTATTTTGAACGATCCG GCGTCGGAAATCACAGGTGCGTACTTCTTCATCTGTCTTCTCTACTTGTT CATCTTTCTTCTCTATCATGTTTATTTCTAAACGAACGTCTTGTGTTTGT GGGGTATGAAGGTGCTTCAGGGGAGGGTTGTCGGTGGCCACGGCACCCAC CTTCCGGGAAGACTCTCCTCGGACTTTCCCTCACCCTTCTCGGGATTTCT TTTTCATATCCTCTCCCCCCCACTTCCTCCACCTCCTCACCACATAAACA TGAACAACGCAGTCACCATCCTCTGCGGCTATGGTTCCTATCTCCTGGCC GACCTTGCGGAGGCCTCGGGCGTGCTGTCCATGGTGGCCGCTGGGCTCTA CCTCTCCTTCCACGGCCTGGGACGCATCTCCGCACGAGTCACCGCCTCCT TGTCTTCCTTCTGGGCCATGGCCTCATTTATTGCCGAGACCATCATCTTC TTCGTCTCGGGACTGGTAGGAGAGGGACGGGGGTAGGGAGGGAGAGAGAG AAGGATGTATCTGTGCACTCTTTATTTCCGGAACAATCGCCTTCTTCGTC TCGGCCTGATACCTCATTTATTTATATTCTCTCAGTCCCTCCATTTCTCC GTTCCTCCATCTCTCCGTTCCTCCATCTCGTCTCTCCCTTATTCATGTGT GTAGATGTCTTGGTGTCGGGGCGACAGTGTGAAAAATGTTTCTTCCATTC CTCCCTCCCTCCCTTTCCCCCTCCCCTCTCATTTTCTCGATCATTTATTT CAGATGGTAAAGTGAAAAGACGCTAACGCATTTATCAATTGTATACAACA CACTCGTGTCATCAACCTTACACAGATCATGGCCGAAAAAGCGCTAATTT CCAGCACCATCCAAGGGCGCGATTGGGGATACTTGTTCCTCCTCTACCTC ATCGTGAACGTCGCTCGTTTCCTGGGCGTGTTTTTGTTCTTCCCAACACT GGCACGTGGCCCCTATGGCATTTCGTGGAGGCAGGGAGTGCTCTTGTCTT GGGGGGGGCTTCGGGGGGCGGTTAGTTTAACGCTCTCCATGGCCGTTTCT CAACAAGAGGAAATTCCGTTGGAGACCCGCGCGCGGATTAGTTTCTTGAC CGCGGGGATTGTGTTGCTGACGATCTTAATCAATGGGAGTACGTGTAAGC TCCTGCTACGGATGCTTAAGCTGAACAATCCCACAGAAGCGGAGCAAGAG CTCTTCATCCGTGCGACGAACGTGATGGAAAATGAACTGGAGGAATTTTT GAATTTAAAATTGAAAAAAGACAAGTATTTGGGTAGCGCCGATTGGAACG TTGTGTACAGGTACCTCCCTGTGCTATCGCCTCAGATCTACTGGCATCGG GTGAGAGAAGGCCATGTCAGATTGAATGAGGGGGAGATAGGATTAATAGG GAAATACATCCAGGAAGAGGAGAAGGAGGAGGCGGCGGCTGCAGGAGAGG AGGGGATGGTGAAGGAAGTGGGGATGGAGGAGGCGGAAGAAATGGGGAGG GGAGGGAAACGGTGA
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Coding sequence (CDS) from alignment at chr13:841627..843891-

>NO13G03010.1 ID=NO13G03010.1|Name=NO13G03010.1|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at chr13:841627..843891- (Nannochloropsis oceanica)
ATGGCTGACACCGCCGAGACCGGCGCCCATTCTCCCCTCCAGCCCGACAG
TGAGGGTAGCAAAGATGTCGGCATGGGCACCTTCGTCCTCGCCCTCACCC
TCGGTATCCTTGCGAGGGCATATCTCTCCTCCATCGTCCGCCTCCCCTAC
ACCTGCCTAGTCCTCCTATTCGGCCTGGCGTATGGCTTCATCCTCTACAC
AGAAGTGGGAATGACAGGACCGGACATCTTCAGCAACAGCACTGACCTTT
GGATTAACCTTCCCCCCGAGGCTATCTTAACTGTCATTTTGCCTATCCTC
ATCTTCGGCTCCTCCTTTTCCAGCGACCTGCACCTTTTCCTCCAACAACT
CACCCCTGTCCTGACATTGGCAGGGCCTGCGGTGTTGGTAGGTACGACCC
TGTTAGGAGTGGCTGCGAAGTACGTGTTGCCCTATGAGTGGGATTGGATG
ACGAGCTTTATGGTGGGGTCGATGTGGACGGCCACTGACCCGGTTGCCGT
GGTGGCTATCCTCAAGACCCTCGGAGTCGCGGAAAGCTTGCAGATTTTGA
TCGATGGAGAGAGCCTTTTGAACGACGGGGTGGCCATCGTCTTGTACTCT
ATTTTCAACCGCTTAGTCCTGGATCAAAACAGTTTTTCAGCAATTGAGAC
ATTCGAGGCGGCGGTGATCTTGTGCTTGGGGGGACCGGCCATAGGTATCG
TGGTGGGGGCGGTTTCGAGTTACGTCCTGGGCGTTATTTTGAACGATCCG
GCGTCGGAAATCACAGTCACCATCCTCTGCGGCTATGGTTCCTATCTCCT
GGCCGACCTTGCGGAGGCCTCGGGCGTGCTGTCCATGGTGGCCGCTGGGC
TCTACCTCTCCTTCCACGGCCTGGGACGCATCTCCGCACGAGTCACCGCC
TCCTTGTCTTCCTTCTGGGCCATGGCCTCATTTATTGCCGAGACCATCAT
CTTCTTCGTCTCGGGACTGATCATGGCCGAAAAAGCGCTAATTTCCAGCA
CCATCCAAGGGCGCGATTGGGGATACTTGTTCCTCCTCTACCTCATCGTG
AACGTCGCTCGTTTCCTGGGCGTGTTTTTGTTCTTCCCAACACTGGCACG
TGGCCCCTATGGCATTTCGTGGAGGCAGGGAGTGCTCTTGTCTTGGGGGG
GGCTTCGGGGGGCGGTTAGTTTAACGCTCTCCATGGCCGTTTCTCAACAA
GAGGAAATTCCGTTGGAGACCCGCGCGCGGATTAGTTTCTTGACCGCGGG
GATTGTGTTGCTGACGATCTTAATCAATGGGAGTACGTGTAAGCTCCTGC
TACGGATGCTTAAGCTGAACAATCCCACAGAAGCGGAGCAAGAGCTCTTC
ATCCGTGCGACGAACGTGATGGAAAATGAACTGGAGGAATTTTTGAATTT
AAAATTGAAAAAAGACAAGTATTTGGGTAGCGCCGATTGGAACGTTGTGT
ACAGGTACCTCCCTGTGCTATCGCCTCAGATCTACTGGCATCGGGTGAGA
GAAGGCCATGTCAGATTGAATGAGGGGGAGATAGGATTAATAGGGAAATA
CATCCAGGAAGAGGAGAAGGAGGAGGCGGCGGCTGCAGGAGAGGAGGGGA
TGGTGAAGGAAGTGGGGATGGAGGAGGCGGAAGAAATGGGGAGGGGAGGG
AAACGGTGA
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Synonyms
Publications