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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:841627..843891 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03010.1 vs.
Match: EWM21970.1 (salt overly sensitive 1 [Nannochloropsis gaditana]) HSP 1 Score: 795.0 bits (2052), Expect = 1.400e-226 Identity = 417/521 (80.04%), Postives = 465/521 (89.25%), Query Frame = 0
Query: 17 SEGSKDVGMGTFVLALTLGILARAYLSSIVRLPYTCLVLLFGLAYGFILYTEVGMTGPDIFSNSTDLWINLPPEAILTVILPILIFGSSFSSDLHLFLQQLTPVLTLAGPAVLVGTTLLGVAAKYVLPYEWDWMTSFMVGSMWTATDPVAVVAILKTLGVAESLQILIDGESLLNDGVAIVLYSIFNRLVLDQNSFSAIETFEAAVILCLGGPAIGIVVGAVSSYVLGVILNDPASEITVTILCGYGSYLLADLAEASGVLSMVAAGLYLSFHGLGRISARVTASLSSFWAMASFIAETIIFFVSGLIMAEKALISSTIQGRDWGYLFLLYLIVNVARFLGVFLFFPTLARGPYGISWRQGVLLSWGGLRGAVSLTLSMAVSQQEEIPLETRARISFLTAGIVLLTILINGSTCKLLLRMLKLNNPTEAEQELFIRATNVMENELEEFLNLKLKKDKYLGSADWNVVYRYLPVLSPQIYWHRVREGHVRLNEGEIGLIGKYIQEEEKEEAAAAGEEGMVKE 538
S+ S DVGMGTFVLAL LGI+ARA LSS+VRLPYTCLVL+FGL YGF++YTEVG+TG DIFS S DLWIN+ PEAILTVILPILIFGSSF+SDLHLFLQQLTPVLTLAGPAVLV LLG+ AKYVLPY WDWMTS MVGSM +ATDPVAVVAILK LGV ESL ILIDGESLLNDG AIVLY+IF+RLV+ + + S +ET E+AVILCLGGPAIG+VVGA++SY+LGV+LNDPASEIT+TILCGYG+YLLA+LAEASGVLSMV AGLYLSFHGLGRISARVT SL SFWAMA+FI+ETIIFFVSGLIMAEKALIS T+QGRDWGYLFLLYLIVN RF+GVFLFFPTLARGPYGI+WRQ VLLSWGGLRGAVSLTL++ VSQ+E IP ETRA I F TAGIVLLTILINGSTCKL+L+ LKLNNPT EQEL+IRA N++ENELE L LKLK DKYLG+ADWNVVYRYLPV SPQIYWHRVREGH+ L+E EI L+G+Y++EEE+E+ GEEG KE
Sbjct: 11 SKFSHDVGMGTFVLALALGIVARACLSSLVRLPYTCLVLIFGLLYGFLIYTEVGITGSDIFSRSADLWINISPEAILTVILPILIFGSSFASDLHLFLQQLTPVLTLAGPAVLVNAALLGLTAKYVLPYNWDWMTSLMVGSMLSATDPVAVVAILKELGVVESLSILIDGESLLNDGFAIVLYTIFSRLVVHEETLSVLETVESAVILCLGGPAIGLVVGALTSYILGVLLNDPASEITMTILCGYGAYLLAELAEASGVLSMVVAGLYLSFHGLGRISARVTGSLKSFWAMAAFISETIIFFVSGLIMAEKALISETVQGRDWGYLFLLYLIVNATRFVGVFLFFPTLARGPYGINWRQAVLLSWGGLRGAVSLTLALVVSQEEGIPEETRALILFFTAGIVLLTILINGSTCKLVLQKLKLNNPTRVEQELYIRAMNLIENELEVSL-LKLKNDKYLGNADWNVVYRYLPVFSPQIYWHRVREGHICLDEAEIALVGRYVREEEEEK--EGGEEGGWKE 528
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03010.1 ID=NO13G03010.1|Name=NO13G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp ATGGCTGACACCGCCGAGACCGGCGCCCATTCTCCCCTCCAGCCCGACAG TGAGGGTAGCAAAGATGTCGGCATGGGCACCTTCGTCCTCGCCCTCACCC TCGGTATCCTTGCGAGGGCATATCTCTCCTCCATCGTCCGCCTCCCCTAC ACCTGCCTAGTCCTCCTATTCGGCCTGGCGTATGGCTTCATCCTCTACAC AGAAGTGGGAATGACAGGACCGGACATCTTCAGCAACAGCACTGACCTTT GGATTAACCTTCCCCCCGAGGCTATCTTAACTGTCATTTTGCCTATCCTC ATCTTCGGCTCCTCCTTTTCCAGCGACCTGCACCTTTTCCTCCAACAACT CACCCCTGTCCTGACATTGGCAGGGCCTGCGGTGTTGGTAGGTACGACCC TGTTAGGAGTGGCTGCGAAGTACGTGTTGCCCTATGAGTGGGATTGGATG ACGAGCTTTATGGTGGGGTCGATGTGGACGGCCACTGACCCGGTTGCCGT GGTGGCTATCCTCAAGACCCTCGGAGTCGCGGAAAGCTTGCAGATTTTGA TCGATGGAGAGAGCCTTTTGAACGACGGGGTGGCCATCGTCTTGTACTCT ATTTTCAACCGCTTAGTCCTGGATCAAAACAGTTTTTCAGCAATTGAGAC ATTCGAGGCGGCGGTGATCTTGTGCTTGGGGGGACCGGCCATAGGTATCG TGGTGGGGGCGGTTTCGAGTTACGTCCTGGGCGTTATTTTGAACGATCCG GCGTCGGAAATCACAGTCACCATCCTCTGCGGCTATGGTTCCTATCTCCT GGCCGACCTTGCGGAGGCCTCGGGCGTGCTGTCCATGGTGGCCGCTGGGC TCTACCTCTCCTTCCACGGCCTGGGACGCATCTCCGCACGAGTCACCGCC TCCTTGTCTTCCTTCTGGGCCATGGCCTCATTTATTGCCGAGACCATCAT CTTCTTCGTCTCGGGACTGATCATGGCCGAAAAAGCGCTAATTTCCAGCA CCATCCAAGGGCGCGATTGGGGATACTTGTTCCTCCTCTACCTCATCGTG AACGTCGCTCGTTTCCTGGGCGTGTTTTTGTTCTTCCCAACACTGGCACG TGGCCCCTATGGCATTTCGTGGAGGCAGGGAGTGCTCTTGTCTTGGGGGG GGCTTCGGGGGGCGGTTAGTTTAACGCTCTCCATGGCCGTTTCTCAACAA GAGGAAATTCCGTTGGAGACCCGCGCGCGGATTAGTTTCTTGACCGCGGG GATTGTGTTGCTGACGATCTTAATCAATGGGAGTACGTGTAAGCTCCTGC TACGGATGCTTAAGCTGAACAATCCCACAGAAGCGGAGCAAGAGCTCTTC ATCCGTGCGACGAACGTGATGGAAAATGAACTGGAGGAATTTTTGAATTT AAAATTGAAAAAAGACAAGTATTTGGGTAGCGCCGATTGGAACGTTGTGT ACAGGTACCTCCCTGTGCTATCGCCTCAGATCTACTGGCATCGGGTGAGA GAAGGCCATGTCAGATTGAATGAGGGGGAGATAGGATTAATAGGGAAATA CATCCAGGAAGAGGAGAAGGAGGAGGCGGCGGCTGCAGGAGAGGAGGGGA TGGTGAAGGAAGTGGGGATGGAGGAGGCGGAAGAAATGGGGAGGGGAGGG AAACGGTGA back to topprotein sequence of NO13G03010.1 >NO13G03010.1-protein ID=NO13G03010.1-protein|Name=NO13G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp MADTAETGAHSPLQPDSEGSKDVGMGTFVLALTLGILARAYLSSIVRLPY TCLVLLFGLAYGFILYTEVGMTGPDIFSNSTDLWINLPPEAILTVILPIL IFGSSFSSDLHLFLQQLTPVLTLAGPAVLVGTTLLGVAAKYVLPYEWDWM TSFMVGSMWTATDPVAVVAILKTLGVAESLQILIDGESLLNDGVAIVLYS IFNRLVLDQNSFSAIETFEAAVILCLGGPAIGIVVGAVSSYVLGVILNDP ASEITVTILCGYGSYLLADLAEASGVLSMVAAGLYLSFHGLGRISARVTA SLSSFWAMASFIAETIIFFVSGLIMAEKALISSTIQGRDWGYLFLLYLIV NVARFLGVFLFFPTLARGPYGISWRQGVLLSWGGLRGAVSLTLSMAVSQQ EEIPLETRARISFLTAGIVLLTILINGSTCKLLLRMLKLNNPTEAEQELF IRATNVMENELEEFLNLKLKKDKYLGSADWNVVYRYLPVLSPQIYWHRVR EGHVRLNEGEIGLIGKYIQEEEKEEAAAAGEEGMVKEVGMEEAEEMGRGG KR* back to topmRNA from alignment at chr13:841627..843891- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03010.1 ID=NO13G03010.1|Name=NO13G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2265bp|location=Sequence derived from alignment at chr13:841627..843891- (Nannochloropsis oceanica) ATGGCTGACACCGCCGAGACCGGCGCCCATTCTCCCCTCCAGCCCGACAG
TGAGGGTAGCAAAGATGTCGGCATGGGCACCTTCGTCCTCGCCCTCACCC
TCGGTATCCTTGCGAGGGCATATCTCTCCTCCATCGTCCGCCTCCCCTAC
ACCTGCCTAGTCCTCCTATTCGGCCTGGCGTATGGCTTCATCCTCTACAC
AGAAGTGGGAATGACAGGACCGGACATCTTCAGCAACAGCACTGACCTTT
GGATTAACCTTCCCCCCGAGGCTATCTTAACTGTCATTTTGCCTATCCTC
ATCTTCGGCTCCTCCTTTTCCAGCGACCTGCACCTTTTCCTCCAACAACT
CACCCCTGTCCTGACATTGGCAGGGCCTGCGGTGTTGGTAGGTACGACCC
TGTTAGGAGTGGCTGCGAAGTACGTGTTGCCCTATGAGTGGGATTGGATG
ACGAGCTTTATGGTGGGGTCGATGTGGACGGCCACTGACCCGGTTGCCGT
GGTGGCTATCCTCAAGACCCTCGGAGTCGCGGAAAGCTTGCAGATTTTGA
TCGATGGAGAGAGCCTTTTGAACGACGGGGTGGCCATCGTCTTGTACTCT
ATTTTCAACCGCTTAGTCCTGGATCAAAACAGTTTTTCAGCAATTGAGAC
ATTCGAGGCGGCGGTGATCTTGTGCTTGGGGGGACCGGCCATAGGTATCG
TGGTGGGGGCGGTTTCGAGTTACGTCCTGGGCGTTATTTTGAACGATCCG
GCGTCGGAAATCACAGGTGCGTACTTCTTCATCTGTCTTCTCTACTTGTT
CATCTTTCTTCTCTATCATGTTTATTTCTAAACGAACGTCTTGTGTTTGT
GGGGTATGAAGGTGCTTCAGGGGAGGGTTGTCGGTGGCCACGGCACCCAC
CTTCCGGGAAGACTCTCCTCGGACTTTCCCTCACCCTTCTCGGGATTTCT
TTTTCATATCCTCTCCCCCCCACTTCCTCCACCTCCTCACCACATAAACA
TGAACAACGCAGTCACCATCCTCTGCGGCTATGGTTCCTATCTCCTGGCC
GACCTTGCGGAGGCCTCGGGCGTGCTGTCCATGGTGGCCGCTGGGCTCTA
CCTCTCCTTCCACGGCCTGGGACGCATCTCCGCACGAGTCACCGCCTCCT
TGTCTTCCTTCTGGGCCATGGCCTCATTTATTGCCGAGACCATCATCTTC
TTCGTCTCGGGACTGGTAGGAGAGGGACGGGGGTAGGGAGGGAGAGAGAG
AAGGATGTATCTGTGCACTCTTTATTTCCGGAACAATCGCCTTCTTCGTC
TCGGCCTGATACCTCATTTATTTATATTCTCTCAGTCCCTCCATTTCTCC
GTTCCTCCATCTCTCCGTTCCTCCATCTCGTCTCTCCCTTATTCATGTGT
GTAGATGTCTTGGTGTCGGGGCGACAGTGTGAAAAATGTTTCTTCCATTC
CTCCCTCCCTCCCTTTCCCCCTCCCCTCTCATTTTCTCGATCATTTATTT
CAGATGGTAAAGTGAAAAGACGCTAACGCATTTATCAATTGTATACAACA
CACTCGTGTCATCAACCTTACACAGATCATGGCCGAAAAAGCGCTAATTT
CCAGCACCATCCAAGGGCGCGATTGGGGATACTTGTTCCTCCTCTACCTC
ATCGTGAACGTCGCTCGTTTCCTGGGCGTGTTTTTGTTCTTCCCAACACT
GGCACGTGGCCCCTATGGCATTTCGTGGAGGCAGGGAGTGCTCTTGTCTT
GGGGGGGGCTTCGGGGGGCGGTTAGTTTAACGCTCTCCATGGCCGTTTCT
CAACAAGAGGAAATTCCGTTGGAGACCCGCGCGCGGATTAGTTTCTTGAC
CGCGGGGATTGTGTTGCTGACGATCTTAATCAATGGGAGTACGTGTAAGC
TCCTGCTACGGATGCTTAAGCTGAACAATCCCACAGAAGCGGAGCAAGAG
CTCTTCATCCGTGCGACGAACGTGATGGAAAATGAACTGGAGGAATTTTT
GAATTTAAAATTGAAAAAAGACAAGTATTTGGGTAGCGCCGATTGGAACG
TTGTGTACAGGTACCTCCCTGTGCTATCGCCTCAGATCTACTGGCATCGG
GTGAGAGAAGGCCATGTCAGATTGAATGAGGGGGAGATAGGATTAATAGG
GAAATACATCCAGGAAGAGGAGAAGGAGGAGGCGGCGGCTGCAGGAGAGG
AGGGGATGGTGAAGGAAGTGGGGATGGAGGAGGCGGAAGAAATGGGGAGG
GGAGGGAAACGGTGA back to topCoding sequence (CDS) from alignment at chr13:841627..843891- >NO13G03010.1 ID=NO13G03010.1|Name=NO13G03010.1|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at chr13:841627..843891- (Nannochloropsis oceanica) ATGGCTGACACCGCCGAGACCGGCGCCCATTCTCCCCTCCAGCCCGACAG TGAGGGTAGCAAAGATGTCGGCATGGGCACCTTCGTCCTCGCCCTCACCC TCGGTATCCTTGCGAGGGCATATCTCTCCTCCATCGTCCGCCTCCCCTAC ACCTGCCTAGTCCTCCTATTCGGCCTGGCGTATGGCTTCATCCTCTACAC AGAAGTGGGAATGACAGGACCGGACATCTTCAGCAACAGCACTGACCTTT GGATTAACCTTCCCCCCGAGGCTATCTTAACTGTCATTTTGCCTATCCTC ATCTTCGGCTCCTCCTTTTCCAGCGACCTGCACCTTTTCCTCCAACAACT CACCCCTGTCCTGACATTGGCAGGGCCTGCGGTGTTGGTAGGTACGACCC TGTTAGGAGTGGCTGCGAAGTACGTGTTGCCCTATGAGTGGGATTGGATG ACGAGCTTTATGGTGGGGTCGATGTGGACGGCCACTGACCCGGTTGCCGT GGTGGCTATCCTCAAGACCCTCGGAGTCGCGGAAAGCTTGCAGATTTTGA TCGATGGAGAGAGCCTTTTGAACGACGGGGTGGCCATCGTCTTGTACTCT ATTTTCAACCGCTTAGTCCTGGATCAAAACAGTTTTTCAGCAATTGAGAC ATTCGAGGCGGCGGTGATCTTGTGCTTGGGGGGACCGGCCATAGGTATCG TGGTGGGGGCGGTTTCGAGTTACGTCCTGGGCGTTATTTTGAACGATCCG GCGTCGGAAATCACAGTCACCATCCTCTGCGGCTATGGTTCCTATCTCCT GGCCGACCTTGCGGAGGCCTCGGGCGTGCTGTCCATGGTGGCCGCTGGGC TCTACCTCTCCTTCCACGGCCTGGGACGCATCTCCGCACGAGTCACCGCC TCCTTGTCTTCCTTCTGGGCCATGGCCTCATTTATTGCCGAGACCATCAT CTTCTTCGTCTCGGGACTGATCATGGCCGAAAAAGCGCTAATTTCCAGCA CCATCCAAGGGCGCGATTGGGGATACTTGTTCCTCCTCTACCTCATCGTG AACGTCGCTCGTTTCCTGGGCGTGTTTTTGTTCTTCCCAACACTGGCACG TGGCCCCTATGGCATTTCGTGGAGGCAGGGAGTGCTCTTGTCTTGGGGGG GGCTTCGGGGGGCGGTTAGTTTAACGCTCTCCATGGCCGTTTCTCAACAA GAGGAAATTCCGTTGGAGACCCGCGCGCGGATTAGTTTCTTGACCGCGGG GATTGTGTTGCTGACGATCTTAATCAATGGGAGTACGTGTAAGCTCCTGC TACGGATGCTTAAGCTGAACAATCCCACAGAAGCGGAGCAAGAGCTCTTC ATCCGTGCGACGAACGTGATGGAAAATGAACTGGAGGAATTTTTGAATTT AAAATTGAAAAAAGACAAGTATTTGGGTAGCGCCGATTGGAACGTTGTGT ACAGGTACCTCCCTGTGCTATCGCCTCAGATCTACTGGCATCGGGTGAGA GAAGGCCATGTCAGATTGAATGAGGGGGAGATAGGATTAATAGGGAAATA CATCCAGGAAGAGGAGAAGGAGGAGGCGGCGGCTGCAGGAGAGGAGGGGA TGGTGAAGGAAGTGGGGATGGAGGAGGCGGAAGAAATGGGGAGGGGAGGG AAACGGTGA back to top
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