NO13G02930.1, NO13G02930.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G02930.1
Unique Name	NO13G02930.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2690
Alignment location	chr13:815422..818322 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:815422..818322 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO13G02930.1 vs.
Match: EWM21955.1 (TLDc [Nannochloropsis gaditana])

HSP 1 Score: 211.1 bits (536), Expect = 1.000e-50
Identity = 105/136 (77.21%), Postives = 117/136 (86.03%), Query Frame = 0

Query:  499 MYLNLKGFSLPHGLGVGGSIDGGFRLWIPESLDGCVAGTRDGTFEWGPLGGGGGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDKSKFLDNEFDKEFLLGKTFGHGKREQMGRD 635
            MYLNLKGFSLPHGLGVGGS+D GFRLWIPESL+GCVAG RD +F WGPL G  G G  GGREGEF+MEGLEVWGVGGEE I AA +AQG AR + A+ IA+AR+VDKSKF+DN+FDKEFLLGKTFG GKRE+ GRD
Sbjct:    1 MYLNLKGFSLPHGLGVGGSVDTGFRLWIPESLEGCVAGDRDASFAWGPLAGKTGGG-KGGREGEFEMEGLEVWGVGGEEAIEAACNAQGEARQMMADNIARARRVDKSKFVDNDFDKEFLLGKTFGQGKRERRGRD 135

The following BLAST results are available for this feature:

BLAST of NO13G02930.1 vs.

BLAST of NO13G02930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM21955.1	1.000e-50	77.21	TLDc [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G02930	NO13G02930	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G02930.1	NO13G02930.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G02930.1.cds1	NO13G02930.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G02930.1.cds2	NO13G02930.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:815422..818322+
coding sequence from alignment at chr13:815422..818322+

mRNA sequence

>NO13G02930.1 ID=NO13G02930.1|Name=NO13G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2690bp
ATGGGCGTCACAACCAGCTTCCCCGCCGGCGGAGCCGAGGGCATCCGCCC
CAAACTCCAGAGCGACAAAAGCAGCATGTTAGGGCATTTATTGCACGGCT
TTTCCCATCATCCTGACGTGATTGTCAATAAAGGTCCGTTTACCGATGCG
GAATACGAGCGGCTATGTGATATCTTTCGTCATTTCGCTTCGTCGTCTTG
CTCTTCGGGTCAAGGAGGAGGAAAGAAGGGAGGAAGGAAGGGTAAGCAGG
CAGTGAGAATGACGAAGGAGGGGTTCTTAAAATTATTTGGCGTCAGGAGT
GAAGAGAACTGGGCGCCGGCGCTGTTTGATGTTTTCAAAGAAATGGGAAG
AGCAGCAGCAGCAGCATCAGCAGTAGCATCAGCAGTAGCAGATGCATATG
GAGAAGAAGACCAAACGGAAGCAGTGAAGGAGAAGGAGGAGGAAGATGAG
GAGGAGGGAAGGTTAGAAGCCAGCCTCAGTTTTGATGAGTTTTTCCAGGG
GGTGTCAGGGTGCACCCGAGCTTCAGATCGGTCGATCCTCCAGGTGGTAT
TTCAGGTGATGTGCTTGTTGGGGGAAGAGGGGGAAGGAGGGGAGGGAGGG
AAGGATGAAGGGGCAGCTGAAGGAGCCGTATCGAATGGAGCGCCTCTTCT
CTCCTACACCTGCCTGAAGGAAGTCATTCGCCTTGCCTACCAATGCCACC
TCCTATCCTCTCCCGCTCCTGTTGTCCCTCCTTCGGGCCCTCCTTCCTCA
GCGTCCTCCACCTCTACATCGCCTCGTCCTCCCACTTCTCCTACTCCTCC
TACTCCTACTCCTACTCCTCCTACTCATGTCCTCACTTTCGATACGACTC
TCTTCCACCACCCGCTCATCCGAGACCATAACATTCCCCCTCCCACCTCC
TCCTTCCACCCTGCTATGCCCTCCTTGCCCTCCTTCGCTTCCTCCCTCAC
TTCCTCGCCCTCTGAATTCTCCATCACTGAAGAGGAAGAGCCGGCCGTTT
CTTTCGACGAATTTTACGTATGGGCCACAGAGTCGTTCCCTCTCCTTTAT
CAACCCTTTGCTGCATTCATGTATTCGCGTCTTTTTGCCAACTGTGAGAT
GGGTGTCCCCCCCCTGCCCCTCCCCCCCTCCCTCCGCCTCGCCCTTCCCG
AGCTCTTGAGCCGTTCCTACATCCTAAGCTCTGAGCACTCCCTGTTTGGA
CTGGCCCTTGCTTCGCCCTATCTGCAAGGGGCATGGACGAGGCTTTACAC
GAGTGAGGAGAATGGGCTGAGTTTTAACAGAATCTGTCATCATATTCTTG
GCTACCGAGGTCCCACCGTCCTTCTCCTCCGCGACACCACCGGCGCCGTC
TTCGGTTTCTTTACCAACGACACGTGGAAGGAGAGCAACTCCTTCTTCGG
CTCCTCAGAATGCTTCCTCTTCCGCCTTTCTCCCTCCTTTGTGGAGATAC
GCCCCAAGGCTAGCGGGCACGGGCAAGGCGGGGCGAAGCACTATATGTAC
CTTAATCTGAAAGGTTTCTCGTTGCCGCATGGACTGGGGGTAGGAGGGAG
CATCGATGGTGGGTTTAGGCTGTGGATCCCGGAGAGTTTGGATGGTTGCG
TGGCCGGCACTCGGGACGGTACGTTCGAGTGGGGGCCTCTGGGAGGAGGG
GGGGGAAGGGGGATGGATGGAGGGAGGGAGGGCGAGTTTGATATGGAGGG
ATTGGAGGTGTGGGGGGTAGGGGGGGAGGAGAGGATTGGGGCAGCGGTAA
GTGCGCAGGGTCATGCGCGGGATCTGCGGGCAGAGATCATTGCGAAAGCT
CGCAAGGTGGACAAGAGCAAATTTCTAGACAACGAATTCGACAAGGAATT
TTTGCTGGGCAAAACCTTTGGACATGGGAAACGGGAGCAAATGGGAAGGG
ACTGAGGAAGAAGTAAAGGAAGTCTTGTCCTTCTCTCTCTGTTACACGAC
AGGCTGCCTGTCATGTGTGTATATATACATACGAGTTTTTTTTTTCAACT
ACATAAACGGGTTGTCGTCCGCGGGGAGGGCACGAGAAAGTCTCTGCCTG
TCGTGTCGTGTACCTTCATCGTGCCTCTCTTCTCTCTCAACGGTTTAGCC
TTCTGATACAGCATCATATCTGGCGGAAGGGGGAAACATTGTGATACAAG
AGCAAATCCTGCGAAACAAGAGCAAATCATGCACCATAAAAGGTTCCGCG
GAGGCGACTCTGGTGGGACCGACGCAATCGCATGTCTTTTTTTTTCGAAT
GTACTTGAATTCCCCGTCGAGAAATGTCAGCATCCAATTCATCACCATCG
AAATCTCTGTTTTGGGACAAGAACCAGCGCCGAATTCCTTTCTATAATAC
CCCTCTTCGTAGGAGACTCTTTTTTTGTCTTGATGGCTCGTATTGAGGGG
AGGCGAAACGGGAGGCATAGAGGCATGGAAAAGAGAATAGAGAGTTGGCA
GACGAAGAAACGAGAAAGAAGTAGTCGAGCCTCGAAAAAGTTGCGAAGCA
CATTCGCCGCCTCGTGTCACGTGGAGGGAGAAGGGAAAGAAGAGCGACAG
TGCGTAAAGACAGATTTGACTTTTTGAAAAGTAAGACCAGCACGCACCAA
AATACACGTAGAGCGGGGGAATTAAGACCATTGACAGGCTCCTAGAGCCA
AAATGTACAAAAGAGAAAGAAGTGGAAGAATGAGGAAGAA

protein sequence of NO13G02930.1

>NO13G02930.1-protein ID=NO13G02930.1-protein|Name=NO13G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MGVTTSFPAGGAEGIRPKLQSDKSSMLGHLLHGFSHHPDVIVNKGPFTDA
EYERLCDIFRHFASSSCSSGQGGGKKGGRKGKQAVRMTKEGFLKLFGVRS
EENWAPALFDVFKEMGRAAAAASAVASAVADAYGEEDQTEAVKEKEEEDE
EEGRLEASLSFDEFFQGVSGCTRASDRSILQVVFQVMCLLGEEGEGGEGG
KDEGAAEGAVSNGAPLLSYTCLKEVIRLAYQCHLLSSPAPVVPPSGPPSS
ASSTSTSPRPPTSPTPPTPTPTPPTHVLTFDTTLFHHPLIRDHNIPPPTS
SFHPAMPSLPSFASSLTSSPSEFSITEEEEPAVSFDEFYVWATESFPLLY
QPFAAFMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFG
LALASPYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAV
FGFFTNDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMY
LNLKGFSLPHGLGVGGSIDGGFRLWIPESLDGCVAGTRDGTFEWGPLGGG
GGRGMDGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKA
RKVDKSKFLDNEFDKEFLLGKTFGHGKREQMGRD*

mRNA from alignment at chr13:815422..818322+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G02930.1 ID=NO13G02930.1|Name=NO13G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2901bp|location=Sequence derived from alignment at chr13:815422..818322+ (Nannochloropsis oceanica)
ATGGGCGTCACAACCAGCTTCCCCGCCGGCGGAGCCGAGGGCATCCGCCC
CAAACTCCAGAGCGACAAAAGCAGCATGTTAGGGCATTTATTGCACGGCT
TTTCCCATCATCCTGACGTGATTGTCAATAAAGGTCCGTTTACCGATGCG
GAATACGAGCGGCTATGTGATATCTTTCGTCATTTCGCTTCGTCGTCTTG
CTCTTCGGGTCAAGGAGGAGGAAAGAAGGGAGGAAGGAAGGGTAAGCAGG
CAGTGAGAATGACGAAGGAGGGGTTCTTAAAATTATTTGGCGTCAGGAGT
GAAGAGAACTGGGCGCCGGCGCTGTTTGATGTTTTCAAAGAAATGGGAAG
AGCAGCAGCAGCAGCATCAGCAGTAGCATCAGCAGTAGCAGATGCATATG
GAGAAGAAGACCAAACGGAAGCAGTGAAGGAGAAGGAGGAGGAAGATGAG
GAGGAGGGAAGGTTAGAAGCCAGCCTCAGTTTTGATGAGTTTTTCCAGGG
GGTGTCAGGGTGCACCCGAGCTTCAGATCGGTCGATCCTCCAGGTGGTAT
TTCAGGTGATGTGCTTGTTGGGGGAAGAGGGGGAAGGAGGGGAGGGAGGG
AAGGATGAAGGGGCAGCTGAAGGAGCCGTATCGAATGGAGCGCCTCTTCT
CTCCTACACCTGCCTGAAGGAAGTCATTCGCCTTGCCTACCAATGCCACC
TCCTATCCTCTCCCGCTCCTGTTGTCCCTCCTTCGGGCCCTCCTTCCTCA
GCGTCCTCCACCTCTACATCGCCTCGTCCTCCCACTTCTCCTACTCCTCC
TACTCCTACTCCTACTCCTCCTACTCATGTCCTCACTTTCGATACGACTC
TCTTCCACCACCCGCTCATCCGAGACCATAACATTCCCCCTCCCACCTCC
TCCTTCCACCCTGCTATGCCCTCCTTGCCCTCCTTCGCTTCCTCCCTCAC
TTCCTCGCCCTCTGAATTCTCCATCACTGAAGAGGAAGAGCCGGCCGTTT
CTTTCGACGAATTTTACGTATGGGCCACAGAGTCGTTCCCTCTCCTTTAT
CAACCCTTTGCTGCATTCATGTATTCGCGTCTTTTTGCCAACTGTGAGAT
GGGTGTCCCCCCCCTGCCCCTCCCCCCCTCCCTCCGCCTCGCCCTTCCCG
AGCTCTTGAGCCGTTCCTACATCCTAAGCTCTGAGCACTCCCTGTTTGGA
CTGGCCCTTGCTTCGCCCTATCTGCAAGGGGCATGGACGAGGCTTTACAC
GAGTGAGGAGAATGGGCTGAGTTTTAACAGAATCTGTCATCATATTCTTG
GCTACCGAGGTAAGCATTGAGGGCGGGCATTACACCTTCCTTCCCTCCCT
CCCTCCTTCACTCCCTCCTCGTCTGTCTCCCCCACCTTCCTTCTCTATTT
CGTATTTTGCATTCTCTTTCTTCTTCTTTTCTTTCTTTAGTCAGAGAATG
TAACAGAGTCGAGTGTAATCATTAATCAGATTCTCTCTCTTTTCTAATCA
ATCGAAAATACGCTACCCAGGTCCCACCGTCCTTCTCCTCCGCGACACCA
CCGGCGCCGTCTTCGGTTTCTTTACCAACGACACGTGGAAGGAGAGCAAC
TCCTTCTTCGGCTCCTCAGAATGCTTCCTCTTCCGCCTTTCTCCCTCCTT
TGTGGAGATACGCCCCAAGGCTAGCGGGCACGGGCAAGGCGGGGCGAAGC
ACTATATGTACCTTAATCTGAAAGGTTTCTCGTTGCCGCATGGACTGGGG
GTAGGAGGGAGCATCGATGGTGGGTTTAGGCTGTGGATCCCGGAGAGTTT
GGATGGTTGCGTGGCCGGCACTCGGGACGGTACGTTCGAGTGGGGGCCTC
TGGGAGGAGGGGGGGGAAGGGGGATGGATGGAGGGAGGGAGGGCGAGTTT
GATATGGAGGGATTGGAGGTGTGGGGGGTAGGGGGGGAGGAGAGGATTGG
GGCAGCGGTAAGTGCGCAGGGTCATGCGCGGGATCTGCGGGCAGAGATCA
TTGCGAAAGCTCGCAAGGTGGACAAGAGCAAATTTCTAGACAACGAATTC
GACAAGGAATTTTTGCTGGGCAAAACCTTTGGACATGGGAAACGGGAGCA
AATGGGAAGGGACTGAGGAAGAAGTAAAGGAAGTCTTGTCCTTCTCTCTC
TGTTACACGACAGGCTGCCTGTCATGTGTGTATATATACATACGAGTTTT
TTTTTTCAACTACATAAACGGGTTGTCGTCCGCGGGGAGGGCACGAGAAA
GTCTCTGCCTGTCGTGTCGTGTACCTTCATCGTGCCTCTCTTCTCTCTCA
ACGGTTTAGCCTTCTGATACAGCATCATATCTGGCGGAAGGGGGAAACAT
TGTGATACAAGAGCAAATCCTGCGAAACAAGAGCAAATCATGCACCATAA
AAGGTTCCGCGGAGGCGACTCTGGTGGGACCGACGCAATCGCATGTCTTT
TTTTTTCGAATGTACTTGAATTCCCCGTCGAGAAATGTCAGCATCCAATT
CATCACCATCGAAATCTCTGTTTTGGGACAAGAACCAGCGCCGAATTCCT
TTCTATAATACCCCTCTTCGTAGGAGACTCTTTTTTTGTCTTGATGGCTC
GTATTGAGGGGAGGCGAAACGGGAGGCATAGAGGCATGGAAAAGAGAATA
GAGAGTTGGCAGACGAAGAAACGAGAAAGAAGTAGTCGAGCCTCGAAAAA
GTTGCGAAGCACATTCGCCGCCTCGTGTCACGTGGAGGGAGAAGGGAAAG
AAGAGCGACAGTGCGTAAAGACAGATTTGACTTTTTGAAAAGTAAGACCA
GCACGCACCAAAATACACGTAGAGCGGGGGAATTAAGACCATTGACAGGC
TCCTAGAGCCAAAATGTACAAAAGAGAAAGAAGTGGAAGAATGAGGAAGA
A

Coding sequence (CDS) from alignment at chr13:815422..818322+

>NO13G02930.1 ID=NO13G02930.1|Name=NO13G02930.1|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at chr13:815422..818322+ (Nannochloropsis oceanica)
ATGGGCGTCACAACCAGCTTCCCCGCCGGCGGAGCCGAGGGCATCCGCCC
CAAACTCCAGAGCGACAAAAGCAGCATGTTAGGGCATTTATTGCACGGCT
TTTCCCATCATCCTGACGTGATTGTCAATAAAGGTCCGTTTACCGATGCG
GAATACGAGCGGCTATGTGATATCTTTCGTCATTTCGCTTCGTCGTCTTG
CTCTTCGGGTCAAGGAGGAGGAAAGAAGGGAGGAAGGAAGGGTAAGCAGG
CAGTGAGAATGACGAAGGAGGGGTTCTTAAAATTATTTGGCGTCAGGAGT
GAAGAGAACTGGGCGCCGGCGCTGTTTGATGTTTTCAAAGAAATGGGAAG
AGCAGCAGCAGCAGCATCAGCAGTAGCATCAGCAGTAGCAGATGCATATG
GAGAAGAAGACCAAACGGAAGCAGTGAAGGAGAAGGAGGAGGAAGATGAG
GAGGAGGGAAGGTTAGAAGCCAGCCTCAGTTTTGATGAGTTTTTCCAGGG
GGTGTCAGGGTGCACCCGAGCTTCAGATCGGTCGATCCTCCAGGTGGTAT
TTCAGGTGATGTGCTTGTTGGGGGAAGAGGGGGAAGGAGGGGAGGGAGGG
AAGGATGAAGGGGCAGCTGAAGGAGCCGTATCGAATGGAGCGCCTCTTCT
CTCCTACACCTGCCTGAAGGAAGTCATTCGCCTTGCCTACCAATGCCACC
TCCTATCCTCTCCCGCTCCTGTTGTCCCTCCTTCGGGCCCTCCTTCCTCA
GCGTCCTCCACCTCTACATCGCCTCGTCCTCCCACTTCTCCTACTCCTCC
TACTCCTACTCCTACTCCTCCTACTCATGTCCTCACTTTCGATACGACTC
TCTTCCACCACCCGCTCATCCGAGACCATAACATTCCCCCTCCCACCTCC
TCCTTCCACCCTGCTATGCCCTCCTTGCCCTCCTTCGCTTCCTCCCTCAC
TTCCTCGCCCTCTGAATTCTCCATCACTGAAGAGGAAGAGCCGGCCGTTT
CTTTCGACGAATTTTACGTATGGGCCACAGAGTCGTTCCCTCTCCTTTAT
CAACCCTTTGCTGCATTCATGTATTCGCGTCTTTTTGCCAACTGTGAGAT
GGGTGTCCCCCCCCTGCCCCTCCCCCCCTCCCTCCGCCTCGCCCTTCCCG
AGCTCTTGAGCCGTTCCTACATCCTAAGCTCTGAGCACTCCCTGTTTGGA
CTGGCCCTTGCTTCGCCCTATCTGCAAGGGGCATGGACGAGGCTTTACAC
GAGTGAGGAGAATGGGCTGAGTTTTAACAGAATCTGTCATCATATTCTTG
GCTACCGAGGTCCCACCGTCCTTCTCCTCCGCGACACCACCGGCGCCGTC
TTCGGTTTCTTTACCAACGACACGTGGAAGGAGAGCAACTCCTTCTTCGG
CTCCTCAGAATGCTTCCTCTTCCGCCTTTCTCCCTCCTTTGTGGAGATAC
GCCCCAAGGCTAGCGGGCACGGGCAAGGCGGGGCGAAGCACTATATGTAC
CTTAATCTGAAAGGTTTCTCGTTGCCGCATGGACTGGGGGTAGGAGGGAG
CATCGATGGTGGGTTTAGGCTGTGGATCCCGGAGAGTTTGGATGGTTGCG
TGGCCGGCACTCGGGACGGTACGTTCGAGTGGGGGCCTCTGGGAGGAGGG
GGGGGAAGGGGGATGGATGGAGGGAGGGAGGGCGAGTTTGATATGGAGGG
ATTGGAGGTGTGGGGGGTAGGGGGGGAGGAGAGGATTGGGGCAGCGGTAA
GTGCGCAGGGTCATGCGCGGGATCTGCGGGCAGAGATCATTGCGAAAGCT
CGCAAGGTGGACAAGAGCAAATTTCTAGACAACGAATTCGACAAGGAATT
TTTGCTGGGCAAAACCTTTGGACATGGGAAACGGGAGCAAATGGGAAGGG
ACTGA

Synonyms

Publications