NO13G02920.1, NO13G02920.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G02920.1
Unique Name	NO13G02920.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1905
Alignment location	chr13:812601..814505 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:812601..814505 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO13G02920.1 vs.

BLAST of NO13G02920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G02920	NO13G02920	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G02920.1	NO13G02920.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G02920.1.cds1	NO13G02920.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:812601..814505-
coding sequence from alignment at chr13:812601..814505-

mRNA sequence

>NO13G02920.1 ID=NO13G02920.1|Name=NO13G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
ATGATCACAGCAGCCAGTGCTAGCCACATGATGAACGAGGAGGCACTGGA
TCATCACGAGCAGCAGTACCACGAACAGGAGGAGGCAGAGGAGGAGGGGA
TTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAATGAGATACTCCCTCCT
TTTTCCGCCGAGGAGGACGACGACGACGGGGAGGCAGCGGCAGCAGACTT
GCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATGACGGAGATGAAGAGG
ATGCGCACCAACCTCATAACGCGACGGCTGCAGATGATACCATCTTCGAA
GCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGAAGGGGGAGAAGGAGT
AGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGGAGGTATGTCTGGAGG
GAGGAGGGGAGGAGGAAGGCGCCGAAGGAGAAGGAGGTGAGGGGGCGATA
GTCATAGAGGAAGATACGGAGGAAGAAGCGGTGGCCACGCTGCTGGCAGC
GACAGGGGAGGAGGAAGAGGGGGGAGGAGATGAAGAGAAGGAGGAGGAGG
AGGAGGAGCAGGAGGAGGAGGAGGAGGTAGAGTATGTAGCGCACGTGCCA
GGGACAGGGGAAGGAGGCCTCTACGACGATGAGGAGGAAGGGGTGGAAGT
AGAGGGAGCAGATTTCACAGCAGCAGCAGCAGCAGCATCAGCAGCAACAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCAGCACTGGCTAGAGGA
GGTGGAGGACGAGGTCTTGACCGAAGGGAAGGAGGAGAAGAAGATCTAAG
AGACGGCAACGGAAGCTCGATTTCTTCCACCTCGGGCTCCGCCTCCTCCT
CCCCCTCCCCCTCTGCCTCGGCCACCGCTCCTCCCTCCCTCCCTGCCCCT
CCCTCCCCAAACGCATTCCTCCTCCAATGCCTAGAAAACGCAACAATTGC
CACATGGGCCCCTTCCGAGCTCGGGCGACTCGTGGCCGTCCTTGCGCAGA
CAATGCACTGGCACCTCAATCCCCCCCTCCTCCATGCCTTCCTCTCCTCC
CTCCCTCCCTCCCTCCTTCCCCTCCGCACCCTTCCCGCGTTGCTCAAGGG
TTTGAACGAGCGTCATTATTGGATGGAGGGTAGGGAGATAGTACGACTGT
TCTGGGATAGGGCAGGGATGGAGGAGGAGGAGGATGGGAGGGAGGGAGGG
AAGGAGGGGTTTGGAAGGGCGGTAAAGGAGGGAGTGAGGGAGGGCGTGTT
GTTCTTGTTGGACCCGGGGTGTGTGGATGCGGTGGTGCGATGTTGCCTTG
GGAAAGGGGGGAGCGAGGGAGGAAGGGTGGGAGGGGAGGAGGGATGGCAT
ATGCTGGTGGACATTGTGGAGGCAGCTAAAAAGAGGGAAGATAGACGGGC
ACTGGTGCTTGCAGTGGCGAGGGAGGTGAAGAAGGGGGGAGGGGGTGAGG
ATGAAGGGGAGGAGGAGGAGGAGGAGGATTTGGAGCAATTTCTGGCGCAG
CTGCCGGGGGGGAAAGAGGAGTGGGAGAGGGAGGTCGATATGATGAGGGG
GGTGGTTGAGATCGAGGATGAGGAGGAGGGAATGGAGGAGGGAGGGGAGG
AGGGAGGGGAGGAGGGAGAAGAGAGGGTGGGAGGAGGAGGAGGAGGTGGA
GGGATAGTAAGGAAGAGGGGTGAGGAGGAGGAGGAGGAGGTGCACGTGAT
GGAGGGGGAAGAAGGGGAGGAGGGGGAGGGAGAGAGGGAGGAAGAGGGAA
AAGGGGATGAGGAGGGCGAGGAAGAGGAGAGAGAGCCGGCTCTGAAGAGG
CATCGGGTGGGGGAGGAAGAGGAAGGGGAAGGAGGGATGGAGGGAGGGAT
TGAGGGAGAAGAGAAAGTAGCAGTAGCAGCAATGCTAGATGCAACCGAGG
GATGA

protein sequence of NO13G02920.1

>NO13G02920.1-protein ID=NO13G02920.1-protein|Name=NO13G02920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MITAASASHMMNEEALDHHEQQYHEQEEAEEEGIRVEVEGRLGVNEILPP
FSAEEDDDDGEAAAADLLEERGEEEGGHDGDEEDAHQPHNATAADDTIFE
AAGEGGEEGEEEGGEGVVMQDEGVEGCVEVCLEGGGEEEGAEGEGGEGAI
VIEEDTEEEAVATLLAATGEEEEGGGDEEKEEEEEEQEEEEEVEYVAHVP
GTGEGGLYDDEEEGVEVEGADFTAAAAAASAATTAAAAAAAAAGAALARG
GGGRGLDRREGGEEDLRDGNGSSISSTSGSASSSPSPSASATAPPSLPAP
PSPNAFLLQCLENATIATWAPSELGRLVAVLAQTMHWHLNPPLLHAFLSS
LPPSLLPLRTLPALLKGLNERHYWMEGREIVRLFWDRAGMEEEEDGREGG
KEGFGRAVKEGVREGVLFLLDPGCVDAVVRCCLGKGGSEGGRVGGEEGWH
MLVDIVEAAKKREDRRALVLAVAREVKKGGGGEDEGEEEEEEDLEQFLAQ
LPGGKEEWEREVDMMRGVVEIEDEEEGMEEGGEEGGEEGEERVGGGGGGG
GIVRKRGEEEEEEVHVMEGEEGEEGEGEREEEGKGDEEGEEEEREPALKR
HRVGEEEEGEGGMEGGIEGEEKVAVAAMLDATEG*

mRNA from alignment at chr13:812601..814505-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G02920.1 ID=NO13G02920.1|Name=NO13G02920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp|location=Sequence derived from alignment at chr13:812601..814505- (Nannochloropsis oceanica)
ATGATCACAGCAGCCAGTGCTAGCCACATGATGAACGAGGAGGCACTGGA
TCATCACGAGCAGCAGTACCACGAACAGGAGGAGGCAGAGGAGGAGGGGA
TTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAATGAGATACTCCCTCCT
TTTTCCGCCGAGGAGGACGACGACGACGGGGAGGCAGCGGCAGCAGACTT
GCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATGACGGAGATGAAGAGG
ATGCGCACCAACCTCATAACGCGACGGCTGCAGATGATACCATCTTCGAA
GCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGAAGGGGGAGAAGGAGT
AGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGGAGGTATGTCTGGAGG
GAGGAGGGGAGGAGGAAGGCGCCGAAGGAGAAGGAGGTGAGGGGGCGATA
GTCATAGAGGAAGATACGGAGGAAGAAGCGGTGGCCACGCTGCTGGCAGC
GACAGGGGAGGAGGAAGAGGGGGGAGGAGATGAAGAGAAGGAGGAGGAGG
AGGAGGAGCAGGAGGAGGAGGAGGAGGTAGAGTATGTAGCGCACGTGCCA
GGGACAGGGGAAGGAGGCCTCTACGACGATGAGGAGGAAGGGGTGGAAGT
AGAGGGAGCAGATTTCACAGCAGCAGCAGCAGCAGCATCAGCAGCAACAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCAGCACTGGCTAGAGGA
GGTGGAGGACGAGGTCTTGACCGAAGGGAAGGAGGAGAAGAAGATCTAAG
AGACGGCAACGGAAGCTCGATTTCTTCCACCTCGGGCTCCGCCTCCTCCT
CCCCCTCCCCCTCTGCCTCGGCCACCGCTCCTCCCTCCCTCCCTGCCCCT
CCCTCCCCAAACGCATTCCTCCTCCAATGCCTAGAAAACGCAACAATTGC
CACATGGGCCCCTTCCGAGCTCGGGCGACTCGTGGCCGTCCTTGCGCAGA
CAATGCACTGGCACCTCAATCCCCCCCTCCTCCATGCCTTCCTCTCCTCC
CTCCCTCCCTCCCTCCTTCCCCTCCGCACCCTTCCCGCGTTGCTCAAGGG
TTTGAACGAGCGTCATTATTGGATGGAGGGTAGGGAGATAGTACGACTGT
TCTGGGATAGGGCAGGGATGGAGGAGGAGGAGGATGGGAGGGAGGGAGGG
AAGGAGGGGTTTGGAAGGGCGGTAAAGGAGGGAGTGAGGGAGGGCGTGTT
GTTCTTGTTGGACCCGGGGTGTGTGGATGCGGTGGTGCGATGTTGCCTTG
GGAAAGGGGGGAGCGAGGGAGGAAGGGTGGGAGGGGAGGAGGGATGGCAT
ATGCTGGTGGACATTGTGGAGGCAGCTAAAAAGAGGGAAGATAGACGGGC
ACTGGTGCTTGCAGTGGCGAGGGAGGTGAAGAAGGGGGGAGGGGGTGAGG
ATGAAGGGGAGGAGGAGGAGGAGGAGGATTTGGAGCAATTTCTGGCGCAG
CTGCCGGGGGGGAAAGAGGAGTGGGAGAGGGAGGTCGATATGATGAGGGG
GGTGGTTGAGATCGAGGATGAGGAGGAGGGAATGGAGGAGGGAGGGGAGG
AGGGAGGGGAGGAGGGAGAAGAGAGGGTGGGAGGAGGAGGAGGAGGTGGA
GGGATAGTAAGGAAGAGGGGTGAGGAGGAGGAGGAGGAGGTGCACGTGAT
GGAGGGGGAAGAAGGGGAGGAGGGGGAGGGAGAGAGGGAGGAAGAGGGAA
AAGGGGATGAGGAGGGCGAGGAAGAGGAGAGAGAGCCGGCTCTGAAGAGG
CATCGGGTGGGGGAGGAAGAGGAAGGGGAAGGAGGGATGGAGGGAGGGAT
TGAGGGAGAAGAGAAAGTAGCAGTAGCAGCAATGCTAGATGCAACCGAGG
GATGA

Coding sequence (CDS) from alignment at chr13:812601..814505-

>NO13G02920.1 ID=NO13G02920.1|Name=NO13G02920.1|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at chr13:812601..814505- (Nannochloropsis oceanica)
ATGATCACAGCAGCCAGTGCTAGCCACATGATGAACGAGGAGGCACTGGA
TCATCACGAGCAGCAGTACCACGAACAGGAGGAGGCAGAGGAGGAGGGGA
TTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAATGAGATACTCCCTCCT
TTTTCCGCCGAGGAGGACGACGACGACGGGGAGGCAGCGGCAGCAGACTT
GCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATGACGGAGATGAAGAGG
ATGCGCACCAACCTCATAACGCGACGGCTGCAGATGATACCATCTTCGAA
GCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGAAGGGGGAGAAGGAGT
AGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGGAGGTATGTCTGGAGG
GAGGAGGGGAGGAGGAAGGCGCCGAAGGAGAAGGAGGTGAGGGGGCGATA
GTCATAGAGGAAGATACGGAGGAAGAAGCGGTGGCCACGCTGCTGGCAGC
GACAGGGGAGGAGGAAGAGGGGGGAGGAGATGAAGAGAAGGAGGAGGAGG
AGGAGGAGCAGGAGGAGGAGGAGGAGGTAGAGTATGTAGCGCACGTGCCA
GGGACAGGGGAAGGAGGCCTCTACGACGATGAGGAGGAAGGGGTGGAAGT
AGAGGGAGCAGATTTCACAGCAGCAGCAGCAGCAGCATCAGCAGCAACAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCAGCACTGGCTAGAGGA
GGTGGAGGACGAGGTCTTGACCGAAGGGAAGGAGGAGAAGAAGATCTAAG
AGACGGCAACGGAAGCTCGATTTCTTCCACCTCGGGCTCCGCCTCCTCCT
CCCCCTCCCCCTCTGCCTCGGCCACCGCTCCTCCCTCCCTCCCTGCCCCT
CCCTCCCCAAACGCATTCCTCCTCCAATGCCTAGAAAACGCAACAATTGC
CACATGGGCCCCTTCCGAGCTCGGGCGACTCGTGGCCGTCCTTGCGCAGA
CAATGCACTGGCACCTCAATCCCCCCCTCCTCCATGCCTTCCTCTCCTCC
CTCCCTCCCTCCCTCCTTCCCCTCCGCACCCTTCCCGCGTTGCTCAAGGG
TTTGAACGAGCGTCATTATTGGATGGAGGGTAGGGAGATAGTACGACTGT
TCTGGGATAGGGCAGGGATGGAGGAGGAGGAGGATGGGAGGGAGGGAGGG
AAGGAGGGGTTTGGAAGGGCGGTAAAGGAGGGAGTGAGGGAGGGCGTGTT
GTTCTTGTTGGACCCGGGGTGTGTGGATGCGGTGGTGCGATGTTGCCTTG
GGAAAGGGGGGAGCGAGGGAGGAAGGGTGGGAGGGGAGGAGGGATGGCAT
ATGCTGGTGGACATTGTGGAGGCAGCTAAAAAGAGGGAAGATAGACGGGC
ACTGGTGCTTGCAGTGGCGAGGGAGGTGAAGAAGGGGGGAGGGGGTGAGG
ATGAAGGGGAGGAGGAGGAGGAGGAGGATTTGGAGCAATTTCTGGCGCAG
CTGCCGGGGGGGAAAGAGGAGTGGGAGAGGGAGGTCGATATGATGAGGGG
GGTGGTTGAGATCGAGGATGAGGAGGAGGGAATGGAGGAGGGAGGGGAGG
AGGGAGGGGAGGAGGGAGAAGAGAGGGTGGGAGGAGGAGGAGGAGGTGGA
GGGATAGTAAGGAAGAGGGGTGAGGAGGAGGAGGAGGAGGTGCACGTGAT
GGAGGGGGAAGAAGGGGAGGAGGGGGAGGGAGAGAGGGAGGAAGAGGGAA
AAGGGGATGAGGAGGGCGAGGAAGAGGAGAGAGAGCCGGCTCTGAAGAGG
CATCGGGTGGGGGAGGAAGAGGAAGGGGAAGGAGGGATGGAGGGAGGGAT
TGAGGGAGAAGAGAAAGTAGCAGTAGCAGCAATGCTAGATGCAACCGAGG
GATGA

Synonyms

Publications