NO13G02910.1, NO13G02910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02910.1
Unique NameNO13G02910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2156
Alignment locationchr13:809217..811721 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:809217..811721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02910.1 vs.
Match: XP_002293327.1 (predicted protein [Thalassiosira pseudonana CCMP1335]; EED89063.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-35
Identity = 80/170 (47.06%), Postives = 112/170 (65.88%), Query Frame = 0 
Query:  129 VSKLKASGINLLALDFDMTVLDIHTGGQWAGKASELCSHIRPFFSSLILEAGREGIHMAVVTFSPQTGMIREVLKEKFGEPLASLIPVRGADGSWVYSGKGSQKGKQGHMASAVEELCARCPSLVIT---RGSTVLIDDDRSNIDVALKAGVRAFWLDPCRPEEVVESLL 296
            V KL    IN LA+DFD T++D+HTGG+W G   EL  H+RP F  L+  A +  I +A+VTFS QT  IREVL+  + +  A +IP+RG D +W Y G G + GKQ HMAS  EEL A+ P++ +T   + +T+LIDDD  NI ++LK G RA W +P  PE +++++L
Sbjct:   20 VQKLVDLKINFLAIDFDQTLVDVHTGGRWKGTTQELVQHMRPLFLRLVPLASQHNIRVAIVTFSRQTERIREVLELSYPD-YADVIPIRGCDNTWEYKGSGMRMGKQEHMASVSEELIAK-PAMGVTDVRKDTTLLIDDDPRNIRLSLKDGTRAVWFNPMDPERLLDNIL 187
The following BLAST results are available for this feature:
BLAST of NO13G02910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002293327.11.400e-3547.06predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02910NO13G02910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02910.1NO13G02910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02910.1.cds1NO13G02910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02910.1.cds2NO13G02910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G02910.1.cds3NO13G02910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02910.1 ID=NO13G02910.1|Name=NO13G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2156bp
CTTTTCACTTACCACCATCCACGACAGAGACACACGCGCGCACAAACACA
CACAAACATACACATATATATATACATATATATACGTAGAGGAGCATCTG
GAGCACTGCGAAACAGACAACAGCACGACTGCACTTGTCCCTGCAGCCTT
GGGCCGGTCTTCTGCTCACCTTGCATAAAGCAACGCACAGCAACCCAGCC
ACCTCGCATCCATCCGCCGCGTAGTGTCTTAGCTACGCTTCCCCCCTCCC
TCCTTCACATCGACACAGATATTAAAGGCGCTGCATCCCCAAATTGCGGG
TGTCCTTCTCCTTCCTATTCTCCCCCTGGTGTACTTACTTAGCTCCAGAG
AGTGGTGCGTACGGCACCGCCGCCGCTCTCACGGGGTCGCCGCGTAGGAG
GAAGAAGGCGACAGACAGAGCAAGACATACCGAAAGAGCAGCACATATAC
ACACGGCATCATGAACTCTTCATCAGAGTCACGCAACCCACAAGGTGCAG
GGGGGAGAGAAGCCGGCGGAGCAGGGGTTGGGGATGTAGGAAAAGACAAG
AGGCCGCTTTCGGCCCGTCTTGGCATTCGCCTCGCCTTGGACCCGGAGGA
AGGGAGGGAGGAAGGGCAGGGGGGTAGTTGTCGAACGGGTAGTCCGTTGC
GGGAGGAGGATGATGGAGGGGGGAAAGTGACCAGTTGCAGCAGTAGCAGG
AGAACGACGACAAGTACTAGGGGACACGGAAGCAACAGCAGTAGCAGCAG
CACCAGCAGTGGTAGTGGTGGTAGTAGGGCGGAGAGGGAGGAGAAGGTAG
AGACGCCAGTGACAAGGAGAGCTTTGGAGGCGTCGAGGAAGGTGGTCTCG
AAGTTGAAGGCGTCAGGGATCAACTTGCTGGCGTTGGATTTTGATATGAC
GGTATTAGATATCCATACCGGCGGACAGTGGGCAGGAAAAGCCTCGGAGC
TCTGTTCGCACATCCGCCCCTTTTTTTCATCCCTCATCCTCGAAGCCGGT
CGGGAGGGCATTCACATGGCTGTCGTCACGTTTTCACCCCAGACGGGCAT
GATCCGCGAGGTACTCAAGGAGAAGTTTGGCGAGCCCCTTGCGTCGCTGA
TTCCCGTGCGAGGGGCGGACGGCTCCTGGGTTTACTCGGGCAAAGGATCT
CAAAAAGGGAAACAAGGGCACATGGCCAGCGCCGTCGAAGAACTGTGCGC
CCGTTGTCCTTCCCTAGTCATCACCAGGGGAAGCACCGTCTTGATTGATG
ACGATCGATCGAACATCGACGTGGCCCTCAAGGCGGGTGTGCGTGCTTTC
TGGCTCGACCCCTGCCGGCCCGAGGAGGTGGTAGAGAGCCTGTTGGGAGG
GATGGGAATGTCCTCCCTCCCTCCTTCCCTCCCTCCCTCATTTTCGGAGG
AGGGAGAGGGTTAGGTGGGGAGTGAGGGAGAGGGGAAGGAAGGGCGAAAG
GAAGAGGGAGGCGGCGTTGTGGAGAGATGTTGGGAGAGAGAAAGAGAATG
ACCTACGGAGGGAGGGGGTTGGCAGATAGCCGAATGGGAGGGATGAGGAG
GAATTTGAACTGCTCCGGTTACCGGGGGCTGGTGAATGAATTCGTATGGG
CTGCTGAAAAAGCCTGAACTTAACTGACTTTTCAAAGTTGAAGCAGCCGG
ATTTCAAAAAACGCCAGAGTGCCTGTCTACATAGGACAAATCAACATAAA
AGTCAAAACCTCGTTGCAGGTGAGAGGTCGTTCAAATTAAAGCAGCCTGA
TTACAAGAAGTTGAACGACATTCACCCGTGGACAGGCCTAGACCTTTCTG
TTGATTTGTCCCATGCGGGTGCCATGGTTTTTCTTGAAGTCGGGCTGCTT
CCAATTTAAAAACATACGGCTGGAAAATTCCAAGGCTTTTCCCGCAGCCC
GTATGCATTCACCAGTGCGCCGTGGCCGGGCAGTTCAGTTGCGCCGTAGC
GTCACTATTGTCCCCTAAGCAACAGCGACGGGGTGGTAGGGACCCTCTTG
AGATGGTCGAAGCCTCCGACCATGAGGACTGGGAGCCAAACACTTAGCAA
AATACGTGAAAAATGATAGTGGGGGAGTGAGGGGAGGTTCAAATGAGCAC
GAGAAAGTCATACGCAAAATAAGGGATAAAAGGAGGGAGGGAGGGGGGAA
GGGAGG
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protein sequence of NO13G02910.1

>NO13G02910.1-protein ID=NO13G02910.1-protein|Name=NO13G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MNSSSESRNPQGAGGREAGGAGVGDVGKDKRPLSARLGIRLALDPEEGRE
EGQGGSCRTGSPLREEDDGGGKVTSCSSSRRTTTSTRGHGSNSSSSSTSS
GSGGSRAEREEKVETPVTRRALEASRKVVSKLKASGINLLALDFDMTVLD
IHTGGQWAGKASELCSHIRPFFSSLILEAGREGIHMAVVTFSPQTGMIRE
VLKEKFGEPLASLIPVRGADGSWVYSGKGSQKGKQGHMASAVEELCARCP
SLVITRGSTVLIDDDRSNIDVALKAGVRAFWLDPCRPEEVVESLLGGMGM
SSLPPSLPPSFSEEGEG*
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mRNA from alignment at chr13:809217..811721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02910.1 ID=NO13G02910.1|Name=NO13G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2505bp|location=Sequence derived from alignment at chr13:809217..811721+ (Nannochloropsis oceanica)
CTTTTCACTTACCACCATCCACGACAGAGACACACGCGCGCACAAACACA
CACAAACATACACATATATATATACATATATATACGTAGAGGAGCATCTG
GAGCACTGCGAAACAGACAACAGCACGACTGCACTTGTCCCTGCAGCCTT
GGGCCGGTCTTCTGCTCACCTTGCATAAAGCAACGCACAGCAACCCAGCC
ACCTCGCATCCATCCGCCGCGTAGTGTCTTAGCTACGCTTCCCCCCTCCC
TCCTTCACATCGACACAGATATTAAAGGCGCTGCATCCCCAAATTGCGGG
TGTCCTTCTCCTTCCTATTCTCCCCCTGGTGTACTTACTTAGCTCCAGAG
AGTGGTGCGTACGGCACCGCCGCCGCTCTCACGGGGTCGCCGCGTAGGAG
GAAGAAGGCGACAGACAGAGCAAGACATACCGAAAGAGCAGCACATATAC
ACACGGCATCATGAACTCTTCATCAGAGTCACGCAACCCACAAGGTGCAG
GGGGGAGAGAAGCCGGCGGAGCAGGGGTTGGGGATGTAGGAAAAGACAAG
AGGCCGCTTTCGGCCCGTCTTGGCATTCGCCTCGCCTTGGACCCGGAGGA
AGGGAGGGAGGAAGGGCAGGGGGGTAGTTGTCGAACGGGTAGTCCGTTGC
GGGAGGAGGATGATGGAGGGGGGAAAGTGACCAGTTGCAGCAGTAGCAGG
AGAACGACGACAAGTACTAGGGGACACGGAAGCAACAGCAGTAGCAGCAG
CACCAGCAGTGGTAGTGGTGGTAGTAGGGCGGAGAGGGAGGAGAAGGTAG
AGACGCCAGTGACAAGGAGAGCTTTGGAGGCGTCGAGGAAGGTGGTCTCG
AAGTTGAAGGCGTCAGGGATCAACTTGCTGGCGTTGGATTTTGATATGAC
GGTATTAGATATCCATACCGGTAAGTGTTGTATTATTTGTATTCGTTTTC
TCAATAAGTTGTGTATATATACATATGTATAAAGGTATACTCTTTCTTTG
GCTCAGTAATGCATGGGTTCTTTTTTTGTGTTGACGCGCATTACAGCCCT
CTAGTTTCATCTAAATTACCATACACGCGGACTCATCCCTTCTACCACCA
CCACCACTGATGATCATCACAATTAACAGGCGGACAGTGGGCAGGAAAAG
CCTCGGAGCTCTGTTCGCACATCCGCCCCTTTTTTTCATCCCTCATCCTC
GAAGCCGGTCGGGAGGGCATTCACATGGCTGTCGTCACGTTTTCACCCCA
GACGGGCATGATCCGCGAGGTACTCAAGGAGAAGTTTGGTACGTCCCCTT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTGCGCTG
AAGACACCCAAACGTGTGAATCAAACTGCAAATAATCGAACCCTATTTCA
AACTCCCCACCCCCCACCACACACACAGGCGAGCCCCTTGCGTCGCTGAT
TCCCGTGCGAGGGGCGGACGGCTCCTGGGTTTACTCGGGCAAAGGATCTC
AAAAAGGGAAACAAGGGCACATGGCCAGCGCCGTCGAAGAACTGTGCGCC
CGTTGTCCTTCCCTAGTCATCACCAGGGGAAGCACCGTCTTGATTGATGA
CGATCGATCGAACATCGACGTGGCCCTCAAGGCGGGTGTGCGTGCTTTCT
GGCTCGACCCCTGCCGGCCCGAGGAGGTGGTAGAGAGCCTGTTGGGAGGG
ATGGGAATGTCCTCCCTCCCTCCTTCCCTCCCTCCCTCATTTTCGGAGGA
GGGAGAGGGTTAGGTGGGGAGTGAGGGAGAGGGGAAGGAAGGGCGAAAGG
AAGAGGGAGGCGGCGTTGTGGAGAGATGTTGGGAGAGAGAAAGAGAATGA
CCTACGGAGGGAGGGGGTTGGCAGATAGCCGAATGGGAGGGATGAGGAGG
AATTTGAACTGCTCCGGTTACCGGGGGCTGGTGAATGAATTCGTATGGGC
TGCTGAAAAAGCCTGAACTTAACTGACTTTTCAAAGTTGAAGCAGCCGGA
TTTCAAAAAACGCCAGAGTGCCTGTCTACATAGGACAAATCAACATAAAA
GTCAAAACCTCGTTGCAGGTGAGAGGTCGTTCAAATTAAAGCAGCCTGAT
TACAAGAAGTTGAACGACATTCACCCGTGGACAGGCCTAGACCTTTCTGT
TGATTTGTCCCATGCGGGTGCCATGGTTTTTCTTGAAGTCGGGCTGCTTC
CAATTTAAAAACATACGGCTGGAAAATTCCAAGGCTTTTCCCGCAGCCCG
TATGCATTCACCAGTGCGCCGTGGCCGGGCAGTTCAGTTGCGCCGTAGCG
TCACTATTGTCCCCTAAGCAACAGCGACGGGGTGGTAGGGACCCTCTTGA
GATGGTCGAAGCCTCCGACCATGAGGACTGGGAGCCAAACACTTAGCAAA
ATACGTGAAAAATGATAGTGGGGGAGTGAGGGGAGGTTCAAATGAGCACG
AGAAAGTCATACGCAAAATAAGGGATAAAAGGAGGGAGGGAGGGGGGAAG
GGAGG
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Coding sequence (CDS) from alignment at chr13:809217..811721+

>NO13G02910.1 ID=NO13G02910.1|Name=NO13G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr13:809217..811721+ (Nannochloropsis oceanica)
ATGAACTCTTCATCAGAGTCACGCAACCCACAAGGTGCAGGGGGGAGAGA
AGCCGGCGGAGCAGGGGTTGGGGATGTAGGAAAAGACAAGAGGCCGCTTT
CGGCCCGTCTTGGCATTCGCCTCGCCTTGGACCCGGAGGAAGGGAGGGAG
GAAGGGCAGGGGGGTAGTTGTCGAACGGGTAGTCCGTTGCGGGAGGAGGA
TGATGGAGGGGGGAAAGTGACCAGTTGCAGCAGTAGCAGGAGAACGACGA
CAAGTACTAGGGGACACGGAAGCAACAGCAGTAGCAGCAGCACCAGCAGT
GGTAGTGGTGGTAGTAGGGCGGAGAGGGAGGAGAAGGTAGAGACGCCAGT
GACAAGGAGAGCTTTGGAGGCGTCGAGGAAGGTGGTCTCGAAGTTGAAGG
CGTCAGGGATCAACTTGCTGGCGTTGGATTTTGATATGACGGTATTAGAT
ATCCATACCGGCGGACAGTGGGCAGGAAAAGCCTCGGAGCTCTGTTCGCA
CATCCGCCCCTTTTTTTCATCCCTCATCCTCGAAGCCGGTCGGGAGGGCA
TTCACATGGCTGTCGTCACGTTTTCACCCCAGACGGGCATGATCCGCGAG
GTACTCAAGGAGAAGTTTGGCGAGCCCCTTGCGTCGCTGATTCCCGTGCG
AGGGGCGGACGGCTCCTGGGTTTACTCGGGCAAAGGATCTCAAAAAGGGA
AACAAGGGCACATGGCCAGCGCCGTCGAAGAACTGTGCGCCCGTTGTCCT
TCCCTAGTCATCACCAGGGGAAGCACCGTCTTGATTGATGACGATCGATC
GAACATCGACGTGGCCCTCAAGGCGGGTGTGCGTGCTTTCTGGCTCGACC
CCTGCCGGCCCGAGGAGGTGGTAGAGAGCCTGTTGGGAGGGATGGGAATG
TCCTCCCTCCCTCCTTCCCTCCCTCCCTCATTTTCGGAGGAGGGAGAGGG
TTAG
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Synonyms
Publications